Wall clock time and date at job start Tue Mar 31 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47419 * 2 1 4 4 C 1.34775 * 119.99598 * 83.10156 * 3 2 1 5 5 O 1.21357 * 119.99625 * 184.18338 * 4 3 2 6 6 C 1.49452 * 120.00544 * 4.18309 * 4 3 2 7 7 O 1.21353 * 119.99372 * 354.26676 * 6 4 3 8 8 N 1.34771 * 120.00056 * 174.26504 * 6 4 3 9 9 C 1.47020 * 125.65077 * 0.04532 * 8 6 4 10 10 C 1.54374 * 107.28791 * 181.05527 * 9 8 6 11 11 C 1.55152 * 102.92099 * 22.13888 * 10 9 8 12 12 O 1.42900 * 111.00677 * 82.63809 * 11 10 9 13 13 C 1.50698 * 111.00212 * 206.45305 * 11 10 9 14 14 H 1.07995 * 120.00131 * 356.82025 * 13 11 10 15 15 C 1.37880 * 119.99909 * 176.53937 * 13 11 10 16 16 N 1.31516 * 120.00296 * 0.28358 * 15 13 11 17 17 Si 1.86801 * 119.99953 * 180.27489 * 15 13 11 18 18 H 1.48500 * 109.47275 * 60.00391 * 17 15 13 19 19 H 1.48508 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47371 * 300.00408 * 17 15 13 21 21 C 1.47425 * 125.64764 * 179.97438 * 8 6 4 22 22 C 1.46492 * 119.99966 * 263.10799 * 3 2 1 23 23 C 1.53789 * 113.61213 * 223.61463 * 22 3 2 24 24 C 1.53777 * 87.07999 * 220.01754 * 23 22 3 25 25 C 1.53005 * 113.61565 * 270.88409 * 24 23 22 26 26 C 1.53003 * 113.69099 * 139.99053 * 24 23 22 27 27 C 1.53783 * 113.61584 * 126.11843 * 22 3 2 28 28 H 1.08990 * 109.46800 * 299.99990 * 1 2 3 29 29 H 1.08996 * 109.46499 * 59.99926 * 1 2 3 30 30 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47317 * 239.99679 * 2 1 3 32 32 H 1.09003 * 109.47044 * 120.00456 * 2 1 3 33 33 H 1.09002 * 109.88003 * 300.43768 * 9 8 6 34 34 H 1.08996 * 109.88678 * 61.60384 * 9 8 6 35 35 H 1.08993 * 110.70323 * 263.79055 * 10 9 8 36 36 H 1.09001 * 110.75268 * 140.50535 * 10 9 8 37 37 H 0.96697 * 114.00058 * 183.17370 * 12 11 10 38 38 H 0.96990 * 120.00285 * 179.97438 * 16 15 13 39 39 H 1.09006 * 110.36715 * 37.06852 * 21 8 6 40 40 H 1.09000 * 110.36749 * 274.74693 * 21 8 6 41 41 H 1.09001 * 112.85008 * 354.91565 * 22 3 2 42 42 H 1.08992 * 113.61267 * 334.56768 * 23 22 3 43 43 H 1.09003 * 113.60933 * 105.47184 * 23 22 3 44 44 H 1.08998 * 109.47395 * 157.49964 * 25 24 23 45 45 H 1.09000 * 109.46633 * 277.49733 * 25 24 23 46 46 H 1.08995 * 109.46879 * 37.49548 * 25 24 23 47 47 H 1.08999 * 109.47190 * 322.46633 * 26 24 23 48 48 H 1.09008 * 109.46881 * 82.46307 * 26 24 23 49 49 H 1.08997 * 109.47479 * 202.46096 * 26 24 23 50 50 H 1.08994 * 113.61070 * 254.52482 * 27 22 3 51 51 H 1.08999 * 113.61438 * 25.34720 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1109 2.0632 1.1588 5 8 2.4428 3.2305 1.1510 6 6 1.8048 1.3820 2.4533 7 8 1.3733 0.2478 2.4549 8 7 2.0079 2.0274 3.6189 9 6 2.5227 3.3971 3.7616 10 6 2.6119 3.6986 5.2730 11 6 2.6766 2.2835 5.9058 12 8 4.0097 1.7696 5.8764 13 6 2.1364 2.2957 7.3125 14 1 1.8201 3.2256 7.7615 15 6 2.0405 1.1188 8.0244 16 7 2.4257 -0.0137 7.4778 17 14 1.3637 1.1328 9.7654 18 1 -0.0252 1.6583 9.7524 19 1 1.3653 -0.2494 10.3084 20 1 2.2132 2.0008 10.6199 21 6 1.7493 1.4773 4.9620 22 6 2.4062 2.0210 -1.2595 23 6 3.7158 2.8217 -1.1660 24 6 3.0400 3.8803 -2.0533 25 6 3.2330 3.6380 -3.5517 26 6 3.3521 5.3198 -1.6392 27 6 1.6967 3.3615 -1.5135 28 1 -0.3632 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.5124 3.4700 3.3106 34 1 1.8421 4.1008 3.2824 35 1 1.7246 4.2327 5.6124 36 1 3.5150 4.2647 5.5012 37 1 4.0914 0.8682 6.2168 38 1 2.3586 -0.8415 7.9787 39 1 2.0042 0.4180 4.9937 40 1 0.7053 1.6255 5.2381 41 1 2.3692 1.3395 -2.1094 42 1 3.9409 3.1746 -0.1597 43 1 4.5635 2.3293 -1.6426 44 1 2.4424 4.1435 -4.1063 45 1 4.2018 4.0300 -3.8612 46 1 3.1922 2.5679 -3.7549 47 1 3.3918 5.3845 -0.5518 48 1 4.3143 5.6173 -2.0562 49 1 2.5728 5.9830 -2.0145 50 1 0.9145 3.3049 -2.2704 51 1 1.3685 3.8614 -0.6021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326230135.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:14 Heat of formation + Delta-G solvation = -83.232204 kcal Electronic energy + Delta-G solvation = -31732.897304 eV Core-core repulsion = 27633.637305 eV Total energy + Delta-G solvation = -4099.259999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14226 -39.47928 -37.88371 -37.22951 -35.64194 -34.12380 -32.22288 -31.10771 -30.22654 -29.28103 -27.91885 -27.54602 -25.97724 -25.79256 -24.45123 -23.01751 -22.68427 -20.90077 -19.65565 -18.70734 -18.23810 -17.25008 -16.95287 -16.27685 -15.80148 -15.78252 -15.29908 -14.99658 -14.72536 -14.47764 -14.40975 -13.90146 -13.58786 -13.37162 -13.20162 -13.08724 -13.01209 -12.98354 -12.84261 -12.49561 -12.31149 -12.02845 -11.85938 -11.70230 -11.62973 -11.55468 -11.26899 -11.12248 -11.08725 -10.98889 -10.75972 -10.57231 -10.53968 -10.50282 -10.21682 -10.19975 -10.05254 -9.38733 -8.86852 -8.69121 -8.56996 -8.41939 -7.85549 -6.31618 -4.40981 1.83015 2.62285 3.20559 3.26298 3.28334 3.59108 3.77081 4.23999 4.37565 4.43310 4.62063 4.72678 4.74476 4.96110 5.05800 5.09381 5.20454 5.42759 5.45436 5.48816 5.49661 5.57956 5.68572 5.72694 5.75259 5.76785 5.79911 5.85468 5.86037 5.91467 6.05708 6.06409 6.10418 6.16692 6.27962 6.30332 6.31043 6.38886 6.51238 6.72619 6.73700 6.81434 6.87010 7.17261 7.25436 7.30365 7.70976 7.85577 7.99006 8.10133 8.49506 8.62798 9.27915 9.38561 10.75652 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.003054 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.694439 B = 9166.797004 C =10034.375777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.090 3.910 3 N -0.579 5.579 4 C 0.511 3.489 5 O -0.513 6.513 6 C 0.505 3.495 7 O -0.530 6.530 8 N -0.574 5.574 9 C 0.113 3.887 10 C -0.122 4.122 11 C 0.249 3.751 12 O -0.582 6.582 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.092 3.908 22 C 0.121 3.879 23 C -0.145 4.145 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.139 4.139 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.271 0.729 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.062 0.938 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 3.696 -18.744 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.032 4.032 3 N -0.312 5.312 4 C 0.295 3.705 5 O -0.389 6.389 6 C 0.288 3.712 7 O -0.410 6.410 8 N -0.305 5.305 9 C -0.010 4.010 10 C -0.160 4.160 11 C 0.209 3.791 12 O -0.391 6.391 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.029 4.029 22 C 0.018 3.982 23 C -0.183 4.183 24 C -0.084 4.084 25 C -0.185 4.185 26 C -0.188 4.188 27 C -0.178 4.178 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.081 0.919 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.503 4.064 -19.017 19.453 hybrid contribution -0.634 -0.780 1.027 1.437 sum -1.137 3.283 -17.990 18.323 Atomic orbital electron populations 1.22046 0.95647 1.02123 1.01634 1.22167 0.95114 0.81364 1.04514 1.47794 1.63037 1.14716 1.05643 1.20330 0.78496 0.86576 0.85093 1.90640 1.45473 1.15757 1.87027 1.19666 0.81030 0.86242 0.84281 1.90617 1.46379 1.17697 1.86302 1.48656 1.59546 1.16097 1.06218 1.22124 0.98989 0.82115 0.97745 1.22721 1.02077 0.98855 0.92332 1.19612 0.80275 0.87347 0.91897 1.86108 1.29338 1.36276 1.87377 1.21447 1.43471 0.94412 0.98241 0.91442 1.25085 0.94063 0.95227 0.98842 1.69635 1.47034 0.98719 1.37963 0.86442 0.79546 0.77250 0.83562 1.20008 1.21076 1.19962 1.23475 1.00612 1.01070 0.77731 1.22720 0.96691 0.93338 0.85480 1.23620 0.95909 0.96442 1.02319 1.21541 0.96818 0.95530 0.94510 1.21628 1.01647 1.01322 0.93947 1.21665 1.00586 0.94451 1.02106 1.23510 0.96237 0.96125 1.01878 0.92015 0.93555 0.91695 0.91428 0.86551 0.91469 0.91625 0.90444 0.90582 0.76623 0.91862 0.89357 0.91562 0.87308 0.87274 0.91855 0.92478 0.92420 0.92693 0.91598 0.93067 0.92998 0.91912 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.74 37.16 0.36 -1.56 16 2 C 0.09 1.15 5.74 -4.04 -0.02 1.13 16 3 N -0.58 -7.99 2.74 -165.68 -0.45 -8.45 16 4 C 0.51 8.59 7.06 -11.59 -0.08 8.51 16 5 O -0.51 -8.78 9.85 5.49 0.05 -8.73 16 6 C 0.50 9.92 7.69 -11.59 -0.09 9.83 16 7 O -0.53 -10.92 12.11 5.49 0.07 -10.86 16 8 N -0.57 -11.93 3.33 -170.98 -0.57 -12.50 16 9 C 0.11 2.15 5.49 -3.04 -0.02 2.14 16 10 C -0.12 -2.47 6.13 -24.87 -0.15 -2.62 16 11 C 0.25 5.97 0.88 -89.62 -0.08 5.89 16 12 O -0.58 -14.75 13.17 -35.23 -0.46 -15.22 16 13 C -0.54 -13.76 8.26 -34.44 -0.28 -14.04 16 14 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 15 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 16 N -0.89 -23.32 10.69 55.43 0.59 -22.73 16 17 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.09 2.15 5.50 -2.52 -0.01 2.14 16 22 C 0.12 1.37 4.06 -67.12 -0.27 1.09 16 23 C -0.14 -1.68 6.48 -25.92 -0.17 -1.85 16 24 C -0.08 -0.84 1.39 -153.69 -0.21 -1.05 16 25 C -0.13 -1.01 9.07 37.16 0.34 -0.68 16 26 C -0.13 -1.34 9.19 37.16 0.34 -1.00 16 27 C -0.14 -1.56 6.58 -25.92 -0.17 -1.73 16 28 H 0.06 0.92 7.04 -51.93 -0.37 0.56 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 32 H 0.12 1.79 5.38 -51.93 -0.28 1.51 16 33 H 0.07 1.29 7.72 -51.93 -0.40 0.89 16 34 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 35 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.38 9.94 7.26 45.56 0.33 10.27 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 39 H 0.09 2.28 7.47 -51.93 -0.39 1.90 16 40 H 0.07 1.58 8.03 -51.93 -0.42 1.17 16 41 H 0.11 0.99 7.40 -51.93 -0.38 0.61 16 42 H 0.11 1.58 5.50 -51.93 -0.29 1.29 16 43 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.40 7.34 -51.93 -0.38 0.02 16 47 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 48 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 51 H 0.10 1.38 6.21 -51.93 -0.32 1.06 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -26.99 391.36 -8.38 -35.38 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.87 Total: 14.27 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.62 Total: 7.91 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.43 Total: -43.68 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.34 Total: -34.80 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.99 -8.38 -35.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326230135.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.856 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds