Wall clock time and date at job start Tue Mar 31 2020 22:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46693 * 2 1 4 4 C 1.34778 * 120.00214 * 83.17561 * 3 2 1 5 5 O 1.21347 * 119.99957 * 184.09214 * 4 3 2 6 6 C 1.49447 * 119.99718 * 4.09491 * 4 3 2 7 7 O 1.21353 * 119.99972 * 354.24805 * 6 4 3 8 8 N 1.34773 * 120.00133 * 174.25006 * 6 4 3 9 9 C 1.47024 * 125.64478 * 359.68982 * 8 6 4 10 10 C 1.54332 * 107.27165 * 179.20247 * 9 8 6 11 11 C 1.55156 * 102.94178 * 337.81001 * 10 9 8 12 12 O 1.42897 * 111.00433 * 277.42327 * 11 10 9 13 13 C 1.50697 * 111.03824 * 153.58912 * 11 10 9 14 14 H 1.07999 * 120.00350 * 6.32360 * 13 11 10 15 15 C 1.37882 * 120.00117 * 186.33024 * 13 11 10 16 16 N 1.31513 * 119.99548 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00138 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46913 * 90.00092 * 17 15 13 19 19 H 1.48501 * 109.47396 * 210.00042 * 17 15 13 20 20 H 1.48503 * 109.47528 * 330.00311 * 17 15 13 21 21 C 1.47429 * 125.65100 * 179.97438 * 8 6 4 22 22 C 1.46506 * 120.00156 * 263.17062 * 3 2 1 23 23 C 1.52989 * 109.47209 * 240.00533 * 22 3 2 24 24 C 1.53009 * 109.46991 * 180.02562 * 23 22 3 25 25 C 1.52997 * 109.47247 * 59.99583 * 24 23 22 26 26 C 1.52996 * 109.47018 * 300.00262 * 25 24 23 27 27 C 1.52997 * 109.46899 * 120.00196 * 22 3 2 28 28 H 1.09000 * 109.46859 * 299.99740 * 1 2 3 29 29 H 1.09000 * 109.46804 * 59.99871 * 1 2 3 30 30 H 1.08998 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47177 * 240.00545 * 2 1 3 32 32 H 1.08995 * 109.47627 * 119.99848 * 2 1 3 33 33 H 1.08990 * 109.88373 * 298.61949 * 9 8 6 34 34 H 1.08994 * 109.88406 * 59.79197 * 9 8 6 35 35 H 1.08988 * 110.72394 * 219.44238 * 10 9 8 36 36 H 1.09003 * 110.71660 * 96.16807 * 10 9 8 37 37 H 0.96701 * 114.00583 * 173.65120 * 12 11 10 38 38 H 0.97010 * 119.99884 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.36864 * 322.70868 * 21 8 6 40 40 H 1.09001 * 110.36503 * 84.91970 * 21 8 6 41 41 H 1.08999 * 109.46902 * 0.02562 * 22 3 2 42 42 H 1.08995 * 109.47598 * 299.99505 * 23 22 3 43 43 H 1.08996 * 109.47773 * 59.99771 * 23 22 3 44 44 H 1.09001 * 109.46869 * 299.99612 * 24 23 22 45 45 H 1.08999 * 109.47182 * 180.02562 * 24 23 22 46 46 H 1.08999 * 109.46643 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.46774 * 60.00565 * 25 24 23 48 48 H 1.09001 * 109.47110 * 299.99978 * 26 25 24 49 49 H 1.09000 * 109.46918 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.47244 * 300.00213 * 27 22 3 51 51 H 1.09001 * 109.47162 * 60.00262 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1121 2.0629 1.1589 5 8 2.4454 3.2297 1.1513 6 6 1.8057 1.3817 2.4533 7 8 1.3726 0.2481 2.4548 8 7 2.0105 2.0263 3.6191 9 6 2.5342 3.3926 3.7621 10 6 2.5773 3.7111 5.2716 11 6 1.5452 2.7168 5.8662 12 8 0.2151 3.2243 5.7426 13 6 1.8671 2.3978 7.3034 14 1 2.6628 2.9252 7.8084 15 6 1.1458 1.4326 7.9736 16 7 0.1772 0.7901 7.3584 17 14 1.5452 1.0368 9.7549 18 1 0.7384 1.9065 10.6482 19 1 1.2253 -0.3871 10.0293 20 1 2.9896 1.2764 10.0034 21 6 1.7518 1.4761 4.9622 22 6 2.4047 2.0217 -1.2598 23 6 3.8763 2.4343 -1.1917 24 6 4.2796 3.1037 -2.5072 25 6 3.4123 4.3433 -2.7355 26 6 1.9407 3.9305 -2.8035 27 6 1.5374 3.2612 -1.4887 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5384 3.4505 3.3423 34 1 1.8762 4.0970 3.2534 35 1 2.2721 4.7408 5.4574 36 1 3.5715 3.5233 5.6771 37 1 -0.4713 2.5983 6.0109 38 1 -0.3306 0.1112 7.8300 39 1 0.8531 0.8594 4.9529 40 1 2.6072 0.8936 5.3046 41 1 2.2611 1.3212 -2.0824 42 1 4.0196 3.1350 -0.3692 43 1 4.4941 1.5513 -1.0286 44 1 4.1363 2.4034 -3.3301 45 1 5.3282 3.3973 -2.4589 46 1 3.6994 4.8198 -3.6729 47 1 3.5557 5.0436 -1.9127 48 1 1.7974 3.2302 -3.6264 49 1 1.3228 4.8137 -2.9657 50 1 0.4889 2.9672 -1.5371 51 1 1.6807 3.9618 -0.6660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326251757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:22 Heat of formation + Delta-G solvation = -118.982875 kcal Electronic energy + Delta-G solvation = -31778.745717 eV Core-core repulsion = 27677.935452 eV Total energy + Delta-G solvation = -4100.810265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84368 -39.08552 -37.61314 -37.20043 -35.62407 -34.11177 -32.25471 -31.20667 -30.87941 -30.21439 -29.03460 -27.87793 -25.87250 -24.33642 -23.11531 -22.68554 -22.67376 -21.01785 -20.08218 -19.65921 -18.50628 -17.24682 -16.83866 -16.53673 -15.88155 -15.59543 -15.14469 -14.99350 -14.73276 -14.49408 -14.34960 -14.23232 -14.08168 -13.59400 -13.16627 -13.01476 -13.00893 -12.84507 -12.58883 -12.35875 -12.29966 -12.27372 -11.90658 -11.69377 -11.59750 -11.46372 -11.17580 -11.07594 -11.05614 -10.89764 -10.77789 -10.65987 -10.54876 -10.47753 -10.35852 -10.21916 -10.07685 -9.36942 -8.87457 -8.72479 -8.61589 -8.35646 -7.86653 -6.30429 -4.39826 1.85498 2.62014 3.19732 3.27378 3.29832 3.62008 3.74799 4.24756 4.47562 4.61741 4.68984 4.76540 4.97014 4.99908 5.10368 5.11565 5.20166 5.33405 5.38788 5.43565 5.47964 5.49660 5.57031 5.61965 5.76148 5.80013 5.84048 5.85334 5.93589 5.97088 6.06570 6.07294 6.13677 6.14083 6.22112 6.27216 6.33200 6.38079 6.52071 6.67535 6.73248 6.83736 6.87475 7.18283 7.25917 7.31370 7.71531 7.87381 8.01052 8.11512 8.50854 8.64383 9.27721 9.36231 10.76675 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.003002 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.496425 B = 9326.052443 C = 9958.702438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.588 5.588 4 C 0.511 3.489 5 O -0.514 6.514 6 C 0.505 3.495 7 O -0.530 6.530 8 N -0.574 5.574 9 C 0.112 3.888 10 C -0.122 4.122 11 C 0.249 3.751 12 O -0.581 6.581 13 C -0.536 4.536 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.093 3.907 22 C 0.153 3.847 23 C -0.137 4.137 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.113 4.113 27 C -0.139 4.139 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.380 0.620 38 H 0.270 0.730 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 1.372 -18.877 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.029 4.029 3 N -0.321 5.321 4 C 0.295 3.705 5 O -0.390 6.390 6 C 0.288 3.712 7 O -0.410 6.410 8 N -0.306 5.306 9 C -0.010 4.010 10 C -0.160 4.160 11 C 0.208 3.792 12 O -0.389 6.389 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.027 4.027 22 C 0.051 3.949 23 C -0.176 4.176 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.151 4.151 27 C -0.177 4.177 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.877 1.741 -19.118 19.807 hybrid contribution -0.227 -0.943 1.059 1.436 sum 4.650 0.799 -18.059 18.665 Atomic orbital electron populations 1.22064 0.95602 1.02171 1.01759 1.22160 0.95181 0.81218 1.04373 1.48003 1.63634 1.14767 1.05725 1.20352 0.78395 0.86571 0.85196 1.90650 1.45675 1.15723 1.86918 1.19661 0.81009 0.86270 0.84273 1.90616 1.46173 1.17874 1.86309 1.48680 1.59486 1.16159 1.06286 1.22122 0.98322 0.82771 0.97823 1.22709 0.99955 1.00846 0.92448 1.19630 0.80769 0.86720 0.92073 1.86134 1.17037 1.46109 1.89643 1.21465 1.18786 1.21126 0.96101 0.91428 1.25085 0.94370 0.94879 0.98909 1.69713 1.21111 1.25090 1.37277 0.86395 0.78926 0.77570 0.83971 1.20377 1.21027 1.19685 1.23450 1.01942 0.99711 0.77643 1.21145 0.94499 0.94627 0.84666 1.21959 0.94933 1.01393 0.99271 1.21455 0.99410 0.97161 0.96988 1.21553 0.94916 0.97771 1.01611 1.21458 0.96340 1.00185 0.97098 1.22006 0.98722 0.97896 0.99111 0.91846 0.93565 0.91687 0.91473 0.86616 0.92075 0.91009 0.90589 0.90435 0.76988 0.91994 0.89153 0.91583 0.89708 0.89657 0.92085 0.92239 0.91826 0.92215 0.91561 0.92319 0.91844 0.92151 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.74 37.16 0.36 -1.64 16 2 C 0.09 1.17 5.71 -4.04 -0.02 1.15 16 3 N -0.59 -8.09 2.44 -166.62 -0.41 -8.50 16 4 C 0.51 8.68 7.05 -11.59 -0.08 8.60 16 5 O -0.51 -9.07 10.39 5.50 0.06 -9.01 16 6 C 0.51 9.98 7.69 -11.59 -0.09 9.89 16 7 O -0.53 -10.95 12.11 5.49 0.07 -10.88 16 8 N -0.57 -12.03 3.33 -171.03 -0.57 -12.60 16 9 C 0.11 2.16 5.50 -3.06 -0.02 2.15 16 10 C -0.12 -2.48 6.13 -24.89 -0.15 -2.63 16 11 C 0.25 5.97 0.87 -89.63 -0.08 5.89 16 12 O -0.58 -14.74 13.16 -35.23 -0.46 -15.20 16 13 C -0.54 -13.78 8.27 -34.44 -0.28 -14.06 16 14 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 15 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 16 N -0.89 -23.35 10.69 55.43 0.59 -22.76 16 17 Si 0.90 20.10 29.54 -169.99 -5.02 15.07 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.09 2.19 5.38 -2.53 -0.01 2.18 16 22 C 0.15 1.73 2.55 -67.93 -0.17 1.56 16 23 C -0.14 -1.51 5.13 -26.73 -0.14 -1.65 16 24 C -0.11 -0.98 5.92 -26.73 -0.16 -1.13 16 25 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 26 C -0.11 -1.01 5.92 -26.76 -0.16 -1.17 16 27 C -0.14 -1.59 5.13 -26.76 -0.14 -1.73 16 28 H 0.06 1.00 7.04 -51.93 -0.37 0.63 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.66 7.78 -51.93 -0.40 0.26 16 32 H 0.12 1.74 5.38 -51.93 -0.28 1.46 16 33 H 0.06 1.08 7.82 -51.93 -0.41 0.68 16 34 H 0.07 1.41 7.46 -51.93 -0.39 1.02 16 35 H 0.08 1.49 8.14 -51.94 -0.42 1.07 16 36 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 37 H 0.38 9.83 7.56 45.56 0.34 10.17 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 40 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 41 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.08 1.15 6.31 -51.93 -0.33 0.83 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 1.28 6.03 -51.93 -0.31 0.97 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -27.27 387.33 -9.25 -36.52 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -7.95 Total: 13.62 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.39 Total: 7.90 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.38 Total: -43.86 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.34 Total: -35.10 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.27 -9.25 -36.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326251757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.468 kcal (2) G-P(sol) polarization free energy of solvation -27.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds