Wall clock time and date at job start Tue Mar 31 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46693 * 2 1 4 4 C 1.34778 * 120.00214 * 83.17561 * 3 2 1 5 5 O 1.21347 * 119.99957 * 184.09214 * 4 3 2 6 6 C 1.49447 * 119.99718 * 4.09491 * 4 3 2 7 7 O 1.21353 * 119.99972 * 354.24805 * 6 4 3 8 8 N 1.34773 * 120.00133 * 174.25006 * 6 4 3 9 9 C 1.47024 * 125.64478 * 359.68982 * 8 6 4 10 10 C 1.54332 * 107.27165 * 179.20247 * 9 8 6 11 11 C 1.55156 * 102.94178 * 337.81001 * 10 9 8 12 12 O 1.42897 * 111.00433 * 277.42327 * 11 10 9 13 13 C 1.50697 * 111.03824 * 153.58912 * 11 10 9 14 14 H 1.07999 * 120.00350 * 6.32360 * 13 11 10 15 15 C 1.37882 * 120.00117 * 186.33024 * 13 11 10 16 16 N 1.31513 * 119.99548 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00138 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46913 * 90.00092 * 17 15 13 19 19 H 1.48501 * 109.47396 * 210.00042 * 17 15 13 20 20 H 1.48503 * 109.47528 * 330.00311 * 17 15 13 21 21 C 1.47429 * 125.65100 * 179.97438 * 8 6 4 22 22 C 1.46506 * 120.00156 * 263.17062 * 3 2 1 23 23 C 1.52989 * 109.47209 * 240.00533 * 22 3 2 24 24 C 1.53009 * 109.46991 * 180.02562 * 23 22 3 25 25 C 1.52997 * 109.47247 * 59.99583 * 24 23 22 26 26 C 1.52996 * 109.47018 * 300.00262 * 25 24 23 27 27 C 1.52997 * 109.46899 * 120.00196 * 22 3 2 28 28 H 1.09000 * 109.46859 * 299.99740 * 1 2 3 29 29 H 1.09000 * 109.46804 * 59.99871 * 1 2 3 30 30 H 1.08998 * 109.46857 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47177 * 240.00545 * 2 1 3 32 32 H 1.08995 * 109.47627 * 119.99848 * 2 1 3 33 33 H 1.08990 * 109.88373 * 298.61949 * 9 8 6 34 34 H 1.08994 * 109.88406 * 59.79197 * 9 8 6 35 35 H 1.08988 * 110.72394 * 219.44238 * 10 9 8 36 36 H 1.09003 * 110.71660 * 96.16807 * 10 9 8 37 37 H 0.96701 * 114.00583 * 173.65120 * 12 11 10 38 38 H 0.97010 * 119.99884 * 180.02562 * 16 15 13 39 39 H 1.08997 * 110.36864 * 322.70868 * 21 8 6 40 40 H 1.09001 * 110.36503 * 84.91970 * 21 8 6 41 41 H 1.08999 * 109.46902 * 0.02562 * 22 3 2 42 42 H 1.08995 * 109.47598 * 299.99505 * 23 22 3 43 43 H 1.08996 * 109.47773 * 59.99771 * 23 22 3 44 44 H 1.09001 * 109.46869 * 299.99612 * 24 23 22 45 45 H 1.08999 * 109.47182 * 180.02562 * 24 23 22 46 46 H 1.08999 * 109.46643 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.46774 * 60.00565 * 25 24 23 48 48 H 1.09001 * 109.47110 * 299.99978 * 26 25 24 49 49 H 1.09000 * 109.46918 * 179.97438 * 26 25 24 50 50 H 1.09005 * 109.47244 * 300.00213 * 27 22 3 51 51 H 1.09001 * 109.47162 * 60.00262 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1121 2.0629 1.1589 5 8 2.4454 3.2297 1.1513 6 6 1.8057 1.3817 2.4533 7 8 1.3726 0.2481 2.4548 8 7 2.0105 2.0263 3.6191 9 6 2.5342 3.3926 3.7621 10 6 2.5773 3.7111 5.2716 11 6 1.5452 2.7168 5.8662 12 8 0.2151 3.2243 5.7426 13 6 1.8671 2.3978 7.3034 14 1 2.6628 2.9252 7.8084 15 6 1.1458 1.4326 7.9736 16 7 0.1772 0.7901 7.3584 17 14 1.5452 1.0368 9.7549 18 1 0.7384 1.9065 10.6482 19 1 1.2253 -0.3871 10.0293 20 1 2.9896 1.2764 10.0034 21 6 1.7518 1.4761 4.9622 22 6 2.4047 2.0217 -1.2598 23 6 3.8763 2.4343 -1.1917 24 6 4.2796 3.1037 -2.5072 25 6 3.4123 4.3433 -2.7355 26 6 1.9407 3.9305 -2.8035 27 6 1.5374 3.2612 -1.4887 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5384 3.4505 3.3423 34 1 1.8762 4.0970 3.2534 35 1 2.2721 4.7408 5.4574 36 1 3.5715 3.5233 5.6771 37 1 -0.4713 2.5983 6.0109 38 1 -0.3306 0.1112 7.8300 39 1 0.8531 0.8594 4.9529 40 1 2.6072 0.8936 5.3046 41 1 2.2611 1.3212 -2.0824 42 1 4.0196 3.1350 -0.3692 43 1 4.4941 1.5513 -1.0286 44 1 4.1363 2.4034 -3.3301 45 1 5.3282 3.3973 -2.4589 46 1 3.6994 4.8198 -3.6729 47 1 3.5557 5.0436 -1.9127 48 1 1.7974 3.2302 -3.6264 49 1 1.3228 4.8137 -2.9657 50 1 0.4889 2.9672 -1.5371 51 1 1.6807 3.9618 -0.6660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326251757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:21 Heat of formation + Delta-G solvation = -135.419363 kcal Electronic energy + Delta-G solvation = -31779.458456 eV Core-core repulsion = 27677.935452 eV Total energy + Delta-G solvation = -4101.523004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16074 -40.51038 -39.09390 -38.49589 -36.86948 -35.83024 -34.25190 -32.15248 -31.93556 -31.66509 -30.10761 -29.66029 -27.60610 -25.81552 -24.27015 -23.99360 -23.47613 -22.32832 -21.50277 -20.91884 -19.89416 -19.14063 -18.29002 -17.74849 -17.30452 -17.14446 -16.97356 -16.27535 -16.13431 -15.76006 -15.64047 -15.18728 -14.97111 -14.84570 -14.70255 -14.67274 -14.61745 -14.03385 -13.87846 -13.62198 -13.53379 -13.32204 -13.22118 -13.10780 -13.00194 -12.84927 -12.64160 -12.48235 -12.39298 -12.24665 -12.22787 -12.12380 -11.97102 -11.75688 -11.48113 -11.23128 -11.16047 -11.05013 -10.69820 -10.40974 -10.13668 -9.82858 -9.52774 -8.25857 -6.42773 0.40320 1.28946 1.43331 1.45231 1.54524 2.14709 2.33924 2.42283 2.99974 3.14630 3.74155 3.77457 3.82004 3.95357 4.04183 4.14516 4.14993 4.25299 4.29295 4.30945 4.36686 4.42250 4.58047 4.60092 4.61691 4.64785 4.66224 4.72287 4.76479 4.91675 4.97108 5.03506 5.06758 5.07011 5.12505 5.18653 5.24158 5.31273 5.32155 5.32563 5.35478 5.40726 5.42202 5.48748 5.68337 5.73423 6.02719 6.07061 6.35790 6.61924 6.69469 6.99421 7.25684 7.33862 8.79716 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.003002 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.496425 B = 9326.052443 C = 9958.702438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 N -0.576 5.576 4 C 0.513 3.487 5 O -0.524 6.524 6 C 0.496 3.504 7 O -0.543 6.543 8 N -0.585 5.585 9 C 0.122 3.878 10 C -0.115 4.115 11 C 0.233 3.767 12 O -0.588 6.588 13 C -0.556 4.556 14 H 0.069 0.931 15 C 0.028 3.972 16 N -0.914 5.914 17 Si 0.965 3.035 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.110 3.890 22 C 0.149 3.851 23 C -0.135 4.135 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.107 4.107 27 C -0.137 4.137 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.374 0.626 38 H 0.270 0.730 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.046 0.954 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 1.219 -21.258 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.308 5.308 4 C 0.295 3.705 5 O -0.401 6.401 6 C 0.280 3.720 7 O -0.423 6.423 8 N -0.318 5.318 9 C 0.000 4.000 10 C -0.153 4.153 11 C 0.193 3.807 12 O -0.396 6.396 13 C -0.594 4.594 14 H 0.087 0.913 15 C -0.173 4.173 16 N -0.553 5.553 17 Si 0.790 3.210 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.012 4.012 22 C 0.048 3.952 23 C -0.173 4.173 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.175 4.175 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.222 0.778 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.999 1.592 -21.542 22.419 hybrid contribution -0.607 -0.936 1.736 2.064 sum 5.391 0.656 -19.806 20.537 Atomic orbital electron populations 1.22005 0.95563 1.02766 1.00675 1.22216 0.95139 0.80585 1.05164 1.48116 1.62160 1.15026 1.05530 1.19834 0.79189 0.86453 0.85044 1.90657 1.46596 1.15918 1.86930 1.20380 0.80244 0.86254 0.85115 1.90616 1.46298 1.18586 1.86840 1.48717 1.60409 1.16774 1.05864 1.22081 0.99081 0.81732 0.97071 1.22715 0.99452 1.00307 0.92830 1.19855 0.80743 0.88097 0.91997 1.86127 1.17650 1.46132 1.89649 1.21748 1.19057 1.21469 0.97112 0.91297 1.25809 0.94243 0.94723 1.02509 1.69826 1.21678 1.25275 1.38482 0.85445 0.78900 0.77140 0.79488 1.20193 1.20964 1.18987 1.22977 0.99781 0.99041 0.79375 1.21460 0.94648 0.95194 0.83898 1.21919 0.94720 1.00947 0.99723 1.21442 0.99635 0.97264 0.96098 1.21557 0.94862 0.97607 1.01812 1.21441 0.96424 1.00578 0.96076 1.21946 0.98646 0.97413 0.99494 0.95727 0.91692 0.90326 0.87289 0.89160 0.90195 0.91514 0.89850 0.89013 0.77762 0.92052 0.92396 0.92810 0.86407 0.92688 0.91818 0.90083 0.91272 0.90283 0.93555 0.90147 0.91596 0.92471 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.74 71.98 0.70 -2.99 16 2 C 0.09 2.15 5.71 86.38 0.49 2.64 16 3 N -0.58 -15.18 2.44 -799.42 -1.95 -17.13 16 4 C 0.51 17.52 7.05 87.27 0.61 18.13 16 5 O -0.52 -18.71 10.39 -3.24 -0.03 -18.74 16 6 C 0.50 20.19 7.69 87.27 0.67 20.87 16 7 O -0.54 -23.31 12.11 -3.25 -0.04 -23.35 16 8 N -0.59 -25.28 3.33 -813.39 -2.71 -27.98 16 9 C 0.12 4.75 5.50 86.73 0.48 5.23 16 10 C -0.12 -4.70 6.13 31.79 0.19 -4.50 16 11 C 0.23 11.48 0.87 -10.15 -0.01 11.47 16 12 O -0.59 -30.80 13.16 -148.98 -1.96 -32.76 16 13 C -0.56 -28.92 8.27 25.60 0.21 -28.71 16 14 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 15 C 0.03 1.47 5.29 84.66 0.45 1.92 16 16 N -0.91 -49.08 10.69 21.45 0.23 -48.85 16 17 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.11 5.40 5.38 86.85 0.47 5.87 16 22 C 0.15 3.01 2.55 44.99 0.11 3.12 16 23 C -0.13 -2.71 5.13 30.59 0.16 -2.55 16 24 C -0.11 -1.52 5.92 30.60 0.18 -1.34 16 25 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 26 C -0.11 -1.63 5.92 30.58 0.18 -1.45 16 27 C -0.14 -2.91 5.13 30.58 0.16 -2.76 16 28 H 0.02 0.77 7.04 -2.39 -0.02 0.76 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.73 7.78 -2.39 -0.02 1.71 16 32 H 0.09 2.68 5.38 -2.42 -0.01 2.67 16 33 H 0.08 2.79 7.82 -2.39 -0.02 2.77 16 34 H 0.07 2.65 7.46 -2.39 -0.02 2.64 16 35 H 0.08 3.24 8.14 -2.39 -0.02 3.23 16 36 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 37 H 0.37 20.21 7.56 -74.06 -0.56 19.65 16 38 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 39 H 0.06 3.18 7.33 -2.39 -0.02 3.16 16 40 H 0.05 2.70 8.03 -2.39 -0.02 2.68 16 41 H 0.12 1.68 7.71 -2.39 -0.02 1.66 16 42 H 0.05 1.46 6.31 -2.39 -0.02 1.45 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 51 H 0.06 1.64 6.03 -2.39 -0.01 1.63 16 Total: -1.00 -61.18 387.33 1.17 -60.01 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: 0.36 Total: 42.03 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 5.24 Total: 23.32 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.43 Total: -93.96 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -2.03 Total: -74.86 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.18 1.17 -60.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326251757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.410 kcal (2) G-P(sol) polarization free energy of solvation -61.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds