Wall clock time and date at job start Tue Mar 31 2020 20:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 O 1.42895 * 109.47285 * 239.99793 * 2 1 3 5 5 C 1.53005 * 109.47041 * 119.99394 * 2 1 3 6 6 C 1.52999 * 109.46855 * 184.15304 * 5 2 1 7 7 H 1.08995 * 110.00220 * 54.68681 * 6 5 2 8 8 C 1.54342 * 109.99111 * 293.65017 * 6 5 2 9 9 C 1.55158 * 103.01749 * 218.66652 * 8 6 5 10 10 C 1.54904 * 101.58546 * 35.30774 * 9 8 6 11 11 N 1.47022 * 109.88186 * 175.78471 * 6 5 2 12 12 C 1.34778 * 125.64645 * 298.39679 * 11 6 5 13 13 O 1.21351 * 119.99783 * 4.35451 * 12 11 6 14 14 C 1.49455 * 119.99932 * 184.36498 * 12 11 6 15 15 O 1.21348 * 119.99702 * 353.23963 * 14 12 11 16 16 N 1.34769 * 119.99954 * 173.24418 * 14 12 11 17 17 C 1.46929 * 120.63273 * 353.03227 * 16 14 12 18 18 C 1.53188 * 108.77472 * 233.58697 * 17 16 14 19 19 C 1.53032 * 109.31711 * 305.36343 * 18 17 16 20 20 C 1.53048 * 109.53821 * 61.36385 * 19 18 17 21 21 H 1.08998 * 109.49444 * 58.62328 * 20 19 18 22 22 C 1.50699 * 109.49907 * 178.68349 * 20 19 18 23 23 H 1.08003 * 120.00166 * 0.02562 * 22 20 19 24 24 C 1.37870 * 119.99794 * 179.97438 * 22 20 19 25 25 N 1.31513 * 120.00431 * 0.02562 * 24 22 20 26 26 Si 1.86807 * 119.99844 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47221 * 179.97438 * 26 24 22 28 28 H 1.48492 * 109.47302 * 300.00334 * 26 24 22 29 29 H 1.48504 * 109.46602 * 60.00499 * 26 24 22 30 30 C 1.46928 * 120.62939 * 173.01126 * 16 14 12 31 31 H 1.09000 * 109.47398 * 300.00207 * 1 2 3 32 32 H 1.09004 * 109.47246 * 60.00577 * 1 2 3 33 33 H 1.09002 * 109.46669 * 180.02562 * 1 2 3 34 34 H 0.96702 * 113.99775 * 299.99612 * 4 2 1 35 35 H 1.08995 * 109.46900 * 64.15546 * 5 2 1 36 36 H 1.08997 * 109.47192 * 304.15403 * 5 2 1 37 37 H 1.08995 * 110.84737 * 100.20390 * 8 6 5 38 38 H 1.09001 * 110.51015 * 336.97664 * 8 6 5 39 39 H 1.08995 * 111.00296 * 277.22958 * 9 8 6 40 40 H 1.09006 * 111.00145 * 153.38051 * 9 8 6 41 41 H 1.08996 * 110.37074 * 204.15320 * 10 9 8 42 42 H 1.09004 * 110.46151 * 81.87319 * 10 9 8 43 43 H 1.09000 * 109.58776 * 113.80155 * 17 16 14 44 44 H 1.09001 * 109.58481 * 353.37415 * 17 16 14 45 45 H 1.09006 * 109.49637 * 185.41144 * 18 17 16 46 46 H 1.09003 * 109.52216 * 65.33287 * 18 17 16 47 47 H 1.09000 * 109.46270 * 301.34623 * 19 18 17 48 48 H 1.08998 * 109.45320 * 181.37806 * 19 18 17 49 49 H 0.97001 * 120.00266 * 179.97438 * 25 24 22 50 50 H 1.08993 * 109.58574 * 6.62581 * 30 16 14 51 51 H 1.09002 * 109.58847 * 246.19645 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7211 1.2494 6 6 3.5664 -0.6313 1.3026 7 1 3.8808 0.4107 1.2443 8 6 4.1831 -1.4290 0.1341 9 6 5.4308 -2.0871 0.7801 10 6 4.9206 -2.3814 2.2128 11 7 4.0595 -1.2333 2.5501 12 6 3.7678 -0.8093 3.7957 13 8 2.9780 0.0975 3.9586 14 6 4.4172 -1.4558 4.9764 15 8 5.1109 -2.4398 4.8240 16 7 4.2325 -0.9460 6.2101 17 6 3.5238 0.3277 6.3955 18 6 4.4066 1.2670 7.2232 19 6 4.8013 0.5718 8.5281 20 6 5.6045 -0.6921 8.2120 21 1 6.4914 -0.4252 7.6372 22 6 6.0204 -1.3585 9.4981 23 1 5.7398 -0.9246 10.4465 24 6 6.7582 -2.5227 9.4639 25 7 7.0995 -3.0513 8.3091 26 14 7.2732 -3.3492 11.0581 27 1 8.0514 -4.5760 10.7507 28 1 8.1125 -2.4156 11.8510 29 1 6.0641 -3.7135 11.8396 30 6 4.7354 -1.6537 7.3955 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7211 -1.5953 -1.2327 35 1 1.7387 -1.7680 1.2130 36 1 1.6172 -0.2520 2.1377 37 1 4.4751 -0.7636 -0.6783 38 1 3.4859 -2.1886 -0.2197 39 1 6.2720 -1.3942 0.7995 40 1 5.6979 -3.0090 0.2634 41 1 5.7576 -2.4449 2.9080 42 1 4.3436 -3.3061 2.2293 43 1 2.5854 0.1506 6.9210 44 1 3.3216 0.7780 5.4237 45 1 3.8547 2.1794 7.4496 46 1 5.3044 1.5158 6.6574 47 1 3.9023 0.3017 9.0821 48 1 5.4093 1.2474 9.1298 49 1 7.6189 -3.8702 8.2851 50 1 5.3324 -2.5105 7.0836 51 1 3.8958 -1.9923 8.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327313019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:58 Heat of formation + Delta-G solvation = -111.621803 kcal Electronic energy + Delta-G solvation = -31267.562952 eV Core-core repulsion = 27167.071887 eV Total energy + Delta-G solvation = -4100.491065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79031 -39.22548 -37.88743 -37.21493 -36.61340 -33.31191 -32.50297 -31.87174 -31.50353 -29.98522 -29.71707 -26.16078 -25.78772 -25.00665 -23.65174 -22.01025 -21.94068 -21.63181 -20.73946 -19.38879 -18.49021 -17.13387 -16.91436 -16.63328 -16.10304 -15.93903 -15.77883 -15.18520 -15.06278 -14.53628 -14.38133 -13.95433 -13.85600 -13.58948 -13.40912 -13.38669 -13.08415 -12.87870 -12.70453 -12.54440 -12.44286 -12.21444 -12.16401 -11.97487 -11.79178 -11.40866 -11.19865 -11.08537 -10.96267 -10.89175 -10.83486 -10.65356 -10.45185 -10.27725 -10.20327 -10.04394 -9.82760 -9.18423 -9.10668 -8.70873 -8.51492 -8.43237 -7.80147 -6.01578 -4.10189 1.83360 2.59221 3.31041 3.36633 3.38321 3.63420 3.83320 4.06833 4.39620 4.43280 4.45355 4.51645 4.71972 4.78888 4.89895 4.92622 5.14169 5.20413 5.27413 5.28512 5.44209 5.50490 5.61887 5.66767 5.67538 5.73473 5.80549 5.84750 5.86919 5.91582 5.99545 6.01245 6.12781 6.21469 6.28960 6.37301 6.47865 6.60811 6.70560 6.86325 6.98716 7.06433 7.19395 7.32134 7.35731 7.58542 7.81496 7.92226 7.96973 8.18383 8.35874 8.61195 8.93546 9.55266 11.03671 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.002857 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.357004 B = 9797.833093 C =10773.351979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.099 0.901 4 O -0.561 6.561 5 C -0.165 4.165 6 C 0.140 3.860 7 H 0.077 0.923 8 C -0.112 4.112 9 C -0.141 4.141 10 C 0.095 3.905 11 N -0.590 5.590 12 C 0.523 3.477 13 O -0.520 6.520 14 C 0.495 3.505 15 O -0.518 6.518 16 N -0.569 5.569 17 C 0.067 3.933 18 C -0.133 4.133 19 C -0.113 4.113 20 C 0.042 3.958 21 H 0.029 0.971 22 C -0.520 4.520 23 H 0.058 0.942 24 C 0.063 3.937 25 N -0.881 5.881 26 Si 0.893 3.107 27 H -0.287 1.287 28 H -0.277 1.277 29 H -0.277 1.277 30 C 0.109 3.891 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.372 0.628 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.130 0.870 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.264 0.736 50 H 0.124 0.876 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 4.043 -18.322 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.047 3.953 3 H 0.117 0.883 4 O -0.367 6.367 5 C -0.203 4.203 6 C 0.037 3.963 7 H 0.095 0.905 8 C -0.150 4.150 9 C -0.180 4.180 10 C -0.027 4.027 11 N -0.323 5.323 12 C 0.309 3.691 13 O -0.399 6.399 14 C 0.277 3.723 15 O -0.395 6.395 16 N -0.301 5.301 17 C -0.055 4.055 18 C -0.171 4.171 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.048 0.952 22 C -0.559 4.559 23 H 0.077 0.923 24 C -0.140 4.140 25 N -0.519 5.519 26 Si 0.721 3.279 27 H -0.213 1.213 28 H -0.203 1.203 29 H -0.203 1.203 30 C -0.011 4.011 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.219 0.781 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.147 0.853 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.646 4.434 -18.384 21.229 hybrid contribution -0.075 -1.019 1.240 1.607 sum -9.720 3.415 -17.144 20.001 Atomic orbital electron populations 1.22479 0.96364 1.02506 1.02812 1.21835 0.92794 0.96712 0.83913 0.88278 1.86615 1.76907 1.28986 1.44171 1.22712 0.95766 1.01750 1.00106 1.21638 0.93479 0.97962 0.83245 0.90518 1.22694 0.96594 0.99494 0.96252 1.22926 0.98064 1.01662 0.95302 1.22688 0.95412 0.87937 0.96662 1.48461 1.47924 1.31615 1.04350 1.20474 0.82166 0.83044 0.83460 1.90407 1.35269 1.30294 1.83905 1.19751 0.82931 0.85450 0.84196 1.90714 1.37872 1.26613 1.84283 1.48425 1.53373 1.22314 1.05956 1.22767 0.94225 0.84122 1.04352 1.21950 0.99422 0.97661 0.98065 1.21658 0.99847 0.98581 0.94951 1.18953 0.93298 0.90232 0.95272 0.95239 1.21053 1.34084 1.08736 0.92005 0.92339 1.25055 0.95580 0.97179 0.96212 1.69871 1.37615 1.20509 1.23889 0.86640 0.78694 0.78830 0.83741 1.21251 1.20263 1.20252 1.22472 0.97271 0.98771 0.82562 0.91405 0.91840 0.92415 0.78078 0.91434 0.89131 0.89538 0.90618 0.90662 0.89781 0.87557 0.91165 0.92311 0.85333 0.92174 0.92483 0.93201 0.93078 0.92600 0.85826 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 37.16 0.35 -0.91 16 2 C 0.11 0.84 3.59 -26.73 -0.10 0.74 16 3 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 4 O -0.56 -4.15 10.81 -35.23 -0.38 -4.53 16 5 C -0.16 -1.60 4.50 -26.73 -0.12 -1.72 16 6 C 0.14 1.52 2.93 -66.94 -0.20 1.33 16 7 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 8 C -0.11 -0.95 4.82 -24.89 -0.12 -1.07 16 9 C -0.14 -1.33 7.09 -24.58 -0.17 -1.50 16 10 C 0.10 1.23 6.13 -2.53 -0.02 1.21 16 11 N -0.59 -8.30 3.06 -163.51 -0.50 -8.80 16 12 C 0.52 8.98 7.60 -11.58 -0.09 8.89 16 13 O -0.52 -8.99 11.95 5.50 0.07 -8.93 16 14 C 0.50 10.15 7.70 -11.59 -0.09 10.06 16 15 O -0.52 -11.72 13.21 5.50 0.07 -11.64 16 16 N -0.57 -11.99 2.97 -173.28 -0.51 -12.51 16 17 C 0.07 1.22 6.03 -3.71 -0.02 1.20 16 18 C -0.13 -2.36 6.08 -26.62 -0.16 -2.53 16 19 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 20 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.52 -14.09 8.56 -34.44 -0.29 -14.39 16 23 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 24 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -25.32 11.40 55.43 0.63 -24.69 16 26 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 30 C 0.11 2.65 5.41 -3.71 -0.02 2.63 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.37 1.67 8.49 45.56 0.39 2.06 16 35 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.09 1.09 6.59 -51.93 -0.34 0.74 16 37 H 0.09 0.70 7.95 -51.93 -0.41 0.29 16 38 H 0.08 0.55 6.62 -51.93 -0.34 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.67 6.07 -51.93 -0.32 1.36 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.13 2.27 4.21 -55.32 -0.23 2.04 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.12 3.43 5.13 -51.93 -0.27 3.16 16 51 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -30.60 388.18 -9.11 -39.70 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.83 Total: 5.50 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.48 Total: 3.94 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.38 Total: -46.00 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.24 Total: -25.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.60 -9.11 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327313019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.920 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds