Wall clock time and date at job start Tue Mar 31 2020 20:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 O 1.42895 * 109.47285 * 239.99793 * 2 1 3 5 5 C 1.53005 * 109.47041 * 119.99394 * 2 1 3 6 6 C 1.52999 * 109.46855 * 184.15304 * 5 2 1 7 7 H 1.08995 * 110.00220 * 54.68681 * 6 5 2 8 8 C 1.54342 * 109.99111 * 293.65017 * 6 5 2 9 9 C 1.55158 * 103.01749 * 218.66652 * 8 6 5 10 10 C 1.54904 * 101.58546 * 35.30774 * 9 8 6 11 11 N 1.47022 * 109.88186 * 175.78471 * 6 5 2 12 12 C 1.34778 * 125.64645 * 298.39679 * 11 6 5 13 13 O 1.21351 * 119.99783 * 4.35451 * 12 11 6 14 14 C 1.49455 * 119.99932 * 184.36498 * 12 11 6 15 15 O 1.21348 * 119.99702 * 353.23963 * 14 12 11 16 16 N 1.34769 * 119.99954 * 173.24418 * 14 12 11 17 17 C 1.46929 * 120.63273 * 353.03227 * 16 14 12 18 18 C 1.53188 * 108.77472 * 233.58697 * 17 16 14 19 19 C 1.53032 * 109.31711 * 305.36343 * 18 17 16 20 20 C 1.53048 * 109.53821 * 61.36385 * 19 18 17 21 21 H 1.08998 * 109.49444 * 58.62328 * 20 19 18 22 22 C 1.50699 * 109.49907 * 178.68349 * 20 19 18 23 23 H 1.08003 * 120.00166 * 0.02562 * 22 20 19 24 24 C 1.37870 * 119.99794 * 179.97438 * 22 20 19 25 25 N 1.31513 * 120.00431 * 0.02562 * 24 22 20 26 26 Si 1.86807 * 119.99844 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47221 * 179.97438 * 26 24 22 28 28 H 1.48492 * 109.47302 * 300.00334 * 26 24 22 29 29 H 1.48504 * 109.46602 * 60.00499 * 26 24 22 30 30 C 1.46928 * 120.62939 * 173.01126 * 16 14 12 31 31 H 1.09000 * 109.47398 * 300.00207 * 1 2 3 32 32 H 1.09004 * 109.47246 * 60.00577 * 1 2 3 33 33 H 1.09002 * 109.46669 * 180.02562 * 1 2 3 34 34 H 0.96702 * 113.99775 * 299.99612 * 4 2 1 35 35 H 1.08995 * 109.46900 * 64.15546 * 5 2 1 36 36 H 1.08997 * 109.47192 * 304.15403 * 5 2 1 37 37 H 1.08995 * 110.84737 * 100.20390 * 8 6 5 38 38 H 1.09001 * 110.51015 * 336.97664 * 8 6 5 39 39 H 1.08995 * 111.00296 * 277.22958 * 9 8 6 40 40 H 1.09006 * 111.00145 * 153.38051 * 9 8 6 41 41 H 1.08996 * 110.37074 * 204.15320 * 10 9 8 42 42 H 1.09004 * 110.46151 * 81.87319 * 10 9 8 43 43 H 1.09000 * 109.58776 * 113.80155 * 17 16 14 44 44 H 1.09001 * 109.58481 * 353.37415 * 17 16 14 45 45 H 1.09006 * 109.49637 * 185.41144 * 18 17 16 46 46 H 1.09003 * 109.52216 * 65.33287 * 18 17 16 47 47 H 1.09000 * 109.46270 * 301.34623 * 19 18 17 48 48 H 1.08998 * 109.45320 * 181.37806 * 19 18 17 49 49 H 0.97001 * 120.00266 * 179.97438 * 25 24 22 50 50 H 1.08993 * 109.58574 * 6.62581 * 30 16 14 51 51 H 1.09002 * 109.58847 * 246.19645 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7211 1.2494 6 6 3.5664 -0.6313 1.3026 7 1 3.8808 0.4107 1.2443 8 6 4.1831 -1.4290 0.1341 9 6 5.4308 -2.0871 0.7801 10 6 4.9206 -2.3814 2.2128 11 7 4.0595 -1.2333 2.5501 12 6 3.7678 -0.8093 3.7957 13 8 2.9780 0.0975 3.9586 14 6 4.4172 -1.4558 4.9764 15 8 5.1109 -2.4398 4.8240 16 7 4.2325 -0.9460 6.2101 17 6 3.5238 0.3277 6.3955 18 6 4.4066 1.2670 7.2232 19 6 4.8013 0.5718 8.5281 20 6 5.6045 -0.6921 8.2120 21 1 6.4914 -0.4252 7.6372 22 6 6.0204 -1.3585 9.4981 23 1 5.7398 -0.9246 10.4465 24 6 6.7582 -2.5227 9.4639 25 7 7.0995 -3.0513 8.3091 26 14 7.2732 -3.3492 11.0581 27 1 8.0514 -4.5760 10.7507 28 1 8.1125 -2.4156 11.8510 29 1 6.0641 -3.7135 11.8396 30 6 4.7354 -1.6537 7.3955 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7211 -1.5953 -1.2327 35 1 1.7387 -1.7680 1.2130 36 1 1.6172 -0.2520 2.1377 37 1 4.4751 -0.7636 -0.6783 38 1 3.4859 -2.1886 -0.2197 39 1 6.2720 -1.3942 0.7995 40 1 5.6979 -3.0090 0.2634 41 1 5.7576 -2.4449 2.9080 42 1 4.3436 -3.3061 2.2293 43 1 2.5854 0.1506 6.9210 44 1 3.3216 0.7780 5.4237 45 1 3.8547 2.1794 7.4496 46 1 5.3044 1.5158 6.6574 47 1 3.9023 0.3017 9.0821 48 1 5.4093 1.2474 9.1298 49 1 7.6189 -3.8702 8.2851 50 1 5.3324 -2.5105 7.0836 51 1 3.8958 -1.9923 8.0026 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327313019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:57 Heat of formation + Delta-G solvation = -131.836316 kcal Electronic energy + Delta-G solvation = -31268.439519 eV Core-core repulsion = 27167.071887 eV Total energy + Delta-G solvation = -4101.367632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12849 -40.48287 -39.02870 -38.59548 -37.84467 -35.25244 -33.53984 -33.20543 -32.63891 -31.60683 -30.67763 -27.75208 -26.94986 -26.59277 -25.02544 -23.60638 -22.91828 -22.60182 -21.87176 -20.87476 -19.99158 -18.60531 -18.27703 -17.84684 -17.65524 -17.06076 -16.88504 -16.52197 -16.33282 -16.18353 -15.54197 -15.27356 -15.03133 -14.91187 -14.67793 -14.56416 -14.42719 -14.32010 -14.05423 -13.91788 -13.59858 -13.46453 -13.12612 -12.99232 -12.91293 -12.85510 -12.67859 -12.50230 -12.30123 -12.23656 -12.03580 -11.78335 -11.73108 -11.64455 -11.58264 -11.46299 -11.11293 -10.98948 -10.85673 -10.55172 -10.03670 -9.85413 -9.51811 -8.12063 -6.29195 0.35485 1.25310 1.41599 1.43281 1.51054 2.11730 2.38993 2.45363 3.12224 3.17731 3.48974 3.61689 3.70281 3.79812 4.06650 4.09872 4.14863 4.16293 4.23203 4.32194 4.36385 4.42076 4.54800 4.56779 4.69204 4.71388 4.77250 4.79827 4.89037 4.92730 4.98288 5.00680 5.04396 5.10317 5.14748 5.19749 5.20957 5.24384 5.28594 5.32150 5.34935 5.37424 5.50087 5.56120 5.82921 5.92753 6.07538 6.26933 6.37375 6.66834 6.82134 6.92417 6.99674 7.40592 8.91518 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.002857 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.357004 B = 9797.833093 C =10773.351979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 H 0.094 0.906 4 O -0.566 6.566 5 C -0.157 4.157 6 C 0.132 3.868 7 H 0.072 0.928 8 C -0.099 4.099 9 C -0.131 4.131 10 C 0.089 3.911 11 N -0.582 5.582 12 C 0.526 3.474 13 O -0.523 6.523 14 C 0.485 3.515 15 O -0.548 6.548 16 N -0.577 5.577 17 C 0.068 3.932 18 C -0.125 4.125 19 C -0.106 4.106 20 C 0.040 3.960 21 H -0.012 1.012 22 C -0.537 4.537 23 H 0.062 0.938 24 C 0.012 3.988 25 N -0.913 5.913 26 Si 0.959 3.041 27 H -0.287 1.287 28 H -0.269 1.269 29 H -0.268 1.268 30 C 0.123 3.877 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.386 0.614 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 4.733 -19.735 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.058 3.942 3 H 0.112 0.888 4 O -0.374 6.374 5 C -0.195 4.195 6 C 0.030 3.970 7 H 0.090 0.910 8 C -0.137 4.137 9 C -0.169 4.169 10 C -0.033 4.033 11 N -0.315 5.315 12 C 0.310 3.690 13 O -0.403 6.403 14 C 0.267 3.733 15 O -0.427 6.427 16 N -0.309 5.309 17 C -0.053 4.053 18 C -0.163 4.163 19 C -0.144 4.144 20 C 0.021 3.979 21 H 0.006 0.994 22 C -0.576 4.576 23 H 0.081 0.919 24 C -0.188 4.188 25 N -0.552 5.552 26 Si 0.784 3.216 27 H -0.213 1.213 28 H -0.195 1.195 29 H -0.193 1.193 30 C 0.001 3.999 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.157 0.843 45 H 0.118 0.882 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.097 5.141 -19.832 23.300 hybrid contribution 0.400 -1.259 1.619 2.089 sum -10.697 3.882 -18.213 21.476 Atomic orbital electron populations 1.22439 0.95539 1.03060 1.02784 1.21660 0.93278 0.96198 0.83098 0.88810 1.86593 1.77028 1.30240 1.43512 1.22634 0.94474 1.02191 1.00215 1.21963 0.94633 0.97980 0.82382 0.90999 1.22699 0.96096 0.99695 0.95164 1.22909 0.98307 1.02907 0.92756 1.22759 0.94338 0.87914 0.98307 1.48552 1.47171 1.31489 1.04261 1.19682 0.82473 0.83255 0.83571 1.90384 1.35495 1.30441 1.83976 1.20475 0.82491 0.85193 0.85105 1.90699 1.39093 1.27989 1.84967 1.48453 1.53664 1.23284 1.05453 1.22973 0.94372 0.82681 1.05245 1.21917 0.99483 0.98770 0.96126 1.21552 0.99418 0.96705 0.96721 1.18884 0.92545 0.92358 0.94103 0.99387 1.21449 1.34142 1.09039 0.92950 0.91945 1.25881 0.95653 0.97888 0.99364 1.70056 1.38285 1.20749 1.26080 0.85597 0.78534 0.77687 0.79773 1.21252 1.19451 1.19271 1.21933 0.96429 0.97802 0.83701 0.91976 0.91316 0.91608 0.76402 0.90781 0.91458 0.88219 0.88588 0.90936 0.87315 0.90965 0.90650 0.90984 0.84317 0.88163 0.93506 0.92390 0.92723 0.92948 0.89618 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 9.53 71.98 0.69 -1.40 16 2 C 0.12 1.57 3.59 30.60 0.11 1.68 16 3 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 4 O -0.57 -6.51 10.81 -148.98 -1.61 -8.12 16 5 C -0.16 -2.76 4.50 30.60 0.14 -2.62 16 6 C 0.13 2.67 2.93 45.35 0.13 2.80 16 7 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 8 C -0.10 -1.38 4.82 31.79 0.15 -1.23 16 9 C -0.13 -2.20 7.09 31.98 0.23 -1.97 16 10 C 0.09 2.29 6.13 86.85 0.53 2.83 16 11 N -0.58 -16.25 3.06 -789.58 -2.42 -18.66 16 12 C 0.53 18.27 7.60 87.27 0.66 18.93 16 13 O -0.52 -17.87 11.95 -3.25 -0.04 -17.91 16 14 C 0.48 20.71 7.70 87.27 0.67 21.38 16 15 O -0.55 -26.42 13.21 -3.24 -0.04 -26.47 16 16 N -0.58 -25.09 2.97 -820.49 -2.44 -27.53 16 17 C 0.07 2.42 6.03 86.36 0.52 2.94 16 18 C -0.13 -4.30 6.08 30.67 0.19 -4.11 16 19 C -0.11 -4.36 5.11 30.62 0.16 -4.21 16 20 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 21 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 22 C -0.54 -29.81 8.56 25.60 0.22 -29.59 16 23 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 24 C 0.01 0.66 5.30 84.65 0.45 1.11 16 25 N -0.91 -54.82 11.40 21.44 0.24 -54.58 16 26 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 30 C 0.12 6.26 5.41 86.36 0.47 6.72 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.39 2.02 8.49 -74.06 -0.63 1.39 16 35 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 36 H 0.07 1.55 6.59 -2.39 -0.02 1.53 16 37 H 0.10 1.24 7.95 -2.39 -0.02 1.22 16 38 H 0.10 1.00 6.62 -2.39 -0.02 0.98 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.07 2.41 6.07 -2.39 -0.01 2.39 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 44 H 0.14 4.75 4.21 -56.12 -0.24 4.52 16 45 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.09 5.06 5.13 -2.39 -0.01 5.05 16 51 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.79 388.18 1.08 -68.71 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.07 Total: 23.18 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.29 Total: 15.31 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -4.61 Total: -100.78 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.69 Total: -52.50 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.79 1.08 -68.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327313019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.125 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds