Wall clock time and date at job start Tue Mar 31 2020 20:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46895 * 2 1 4 4 C 1.52993 * 109.46927 * 240.00304 * 2 1 3 5 5 C 1.53000 * 109.47314 * 174.99789 * 4 2 1 6 6 H 1.09001 * 110.45446 * 52.39475 * 5 4 2 7 7 C 1.54505 * 110.51472 * 175.00016 * 5 4 2 8 8 C 1.54484 * 104.06373 * 118.64366 * 7 5 4 9 9 O 1.44426 * 104.80162 * 23.98156 * 8 7 5 10 10 C 1.44423 * 105.27349 * 319.48709 * 9 8 7 11 11 N 1.46496 * 109.47202 * 120.00033 * 2 1 3 12 12 C 1.34773 * 120.00379 * 274.99825 * 11 2 1 13 13 O 1.21352 * 119.99891 * 0.02562 * 12 11 2 14 14 C 1.49450 * 120.00334 * 179.97438 * 12 11 2 15 15 O 1.21348 * 119.99822 * 353.55073 * 14 12 11 16 16 N 1.34783 * 120.00081 * 173.81769 * 14 12 11 17 17 C 1.46928 * 120.62708 * 3.85769 * 16 14 12 18 18 C 1.52768 * 109.00281 * 233.58049 * 17 16 14 19 19 C 1.53039 * 109.38508 * 305.59030 * 18 17 16 20 20 C 1.53039 * 109.53868 * 61.23950 * 19 18 17 21 21 H 1.09003 * 109.52287 * 58.60556 * 20 19 18 22 22 C 1.50697 * 109.49928 * 178.68473 * 20 19 18 23 23 H 1.08005 * 119.99590 * 359.83861 * 22 20 19 24 24 C 1.37878 * 120.00074 * 179.83991 * 22 20 19 25 25 N 1.31511 * 120.00120 * 0.02562 * 24 22 20 26 26 Si 1.86806 * 119.99660 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47043 * 90.00149 * 26 24 22 28 28 H 1.48507 * 109.46727 * 209.99864 * 26 24 22 29 29 H 1.48497 * 109.47374 * 329.99813 * 26 24 22 30 30 C 1.46922 * 120.62937 * 184.13333 * 16 14 12 31 31 H 1.09006 * 109.46701 * 299.99392 * 1 2 3 32 32 H 1.08991 * 109.47401 * 59.99652 * 1 2 3 33 33 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47439 * 294.99915 * 4 2 1 35 35 H 1.09007 * 109.47447 * 54.99786 * 4 2 1 36 36 H 1.08996 * 110.51272 * 237.29027 * 7 5 4 37 37 H 1.09004 * 110.51035 * 359.86056 * 7 5 4 38 38 H 1.08999 * 110.37182 * 142.81109 * 8 7 5 39 39 H 1.09000 * 110.37211 * 265.03544 * 8 7 5 40 40 H 1.09005 * 110.37556 * 281.68163 * 10 9 8 41 41 H 1.08997 * 110.37392 * 159.34900 * 10 9 8 42 42 H 0.97001 * 119.99935 * 95.00450 * 11 2 1 43 43 H 1.08997 * 109.58858 * 353.41146 * 17 16 14 44 44 H 1.08999 * 109.58623 * 113.84525 * 17 16 14 45 45 H 1.09002 * 109.55942 * 185.55413 * 18 17 16 46 46 H 1.08996 * 109.35763 * 65.50162 * 18 17 16 47 47 H 1.09002 * 109.45722 * 301.22482 * 19 18 17 48 48 H 1.08998 * 109.45049 * 181.25873 * 19 18 17 49 49 H 0.97003 * 120.00083 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58779 * 246.15884 * 30 16 14 51 51 H 1.08996 * 109.58545 * 6.44149 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 1 4.0103 -0.9455 -0.3761 7 6 4.1164 -1.4387 -2.4976 8 6 4.8113 -0.3904 -3.3947 9 8 5.1372 0.6992 -2.5045 10 6 3.9917 0.8362 -1.6356 11 7 2.0184 -0.6906 1.1961 12 6 2.1472 -0.0183 2.3571 13 8 1.8582 1.1590 2.4118 14 6 2.6448 -0.7230 3.5775 15 8 2.8215 -1.9233 3.5553 16 7 2.8923 -0.0261 4.7043 17 6 2.5981 1.4117 4.7750 18 6 3.8546 2.1549 5.2252 19 6 4.3592 1.5509 6.5377 20 6 4.7186 0.0795 6.3191 21 1 5.4812 0.0019 5.5442 22 6 5.2457 -0.5058 7.6039 23 1 5.3199 0.1106 8.4876 24 6 5.6333 -1.8281 7.6511 25 7 5.5435 -2.5786 6.5749 26 14 6.2874 -2.5533 9.2436 27 1 5.1605 -3.1135 10.0320 28 1 7.2593 -3.6325 8.9335 29 1 6.9624 -1.4905 10.0310 30 6 3.4668 -0.6885 5.8832 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7714 -1.2057 35 1 1.6053 -0.2616 -2.1370 36 1 4.8364 -2.1774 -2.1455 37 1 3.3030 -1.9257 -3.0355 38 1 5.7185 -0.8071 -3.8324 39 1 4.1333 -0.0525 -4.1785 40 1 3.1873 1.3636 -2.1484 41 1 4.2692 1.3618 -0.7219 42 1 2.2492 -1.6317 1.1525 43 1 2.2951 1.7715 3.7917 44 1 1.7969 1.5859 5.4931 45 1 3.6209 3.2089 5.3758 46 1 4.6251 2.0584 4.4603 47 1 3.5791 1.6255 7.2953 48 1 5.2428 2.0949 6.8715 49 1 5.8158 -3.5090 6.6082 50 1 2.7378 -0.6891 6.6936 51 1 3.7342 -1.7147 5.6316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328097279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:33 Heat of formation + Delta-G solvation = -115.004969 kcal Electronic energy + Delta-G solvation = -30851.493191 eV Core-core repulsion = 26750.855421 eV Total energy + Delta-G solvation = -4100.637770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69398 -39.76761 -38.43159 -36.91113 -36.40242 -33.47039 -33.03278 -31.74185 -31.12249 -29.75268 -29.55185 -26.40217 -25.93157 -24.99052 -23.51078 -22.95836 -21.79413 -21.14857 -20.48466 -20.28153 -18.81098 -17.35328 -16.82531 -16.64629 -16.24552 -15.96322 -15.77041 -15.51058 -15.20351 -14.77992 -14.53049 -14.34068 -13.95195 -13.78518 -13.42242 -13.34191 -13.24999 -13.00517 -12.86887 -12.58657 -12.51147 -12.32791 -12.10571 -11.82839 -11.76956 -11.60743 -11.40450 -11.09515 -10.98143 -10.96923 -10.75938 -10.67357 -10.45962 -10.27909 -10.04586 -10.03694 -9.87079 -9.31273 -9.20009 -9.10892 -8.50756 -8.39811 -7.82402 -6.02162 -4.10291 1.79101 2.68078 3.30137 3.37289 3.40015 3.64598 3.70278 3.95063 4.13538 4.37813 4.41682 4.54376 4.62733 4.74714 4.77787 4.84865 4.99518 5.09679 5.20889 5.28391 5.31385 5.38438 5.42319 5.45840 5.51791 5.58265 5.65149 5.70400 5.71027 5.77856 5.89045 5.94058 5.98034 6.13088 6.27172 6.39681 6.54115 6.60673 6.64040 6.77283 6.86842 6.99382 7.05197 7.18487 7.24078 7.59395 7.83091 7.95322 8.00548 8.16900 8.35474 8.58306 8.93701 9.55264 11.03360 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.002865 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.114996 B = 9770.467842 C =10421.480558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.093 0.907 4 C -0.118 4.118 5 C -0.127 4.127 6 H 0.090 0.910 7 C -0.152 4.152 8 C 0.044 3.956 9 O -0.375 6.375 10 C 0.049 3.951 11 N -0.698 5.698 12 C 0.514 3.486 13 O -0.515 6.515 14 C 0.492 3.508 15 O -0.526 6.526 16 N -0.565 5.565 17 C 0.046 3.954 18 C -0.130 4.130 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.029 0.971 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.882 5.882 26 Si 0.894 3.106 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.412 0.588 43 H 0.148 0.852 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.263 0.737 50 H 0.047 0.953 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 4.637 -19.407 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.111 0.889 4 C -0.156 4.156 5 C -0.146 4.146 6 H 0.108 0.892 7 C -0.189 4.189 8 C -0.033 4.033 9 O -0.294 6.294 10 C -0.028 4.028 11 N -0.352 5.352 12 C 0.297 3.703 13 O -0.393 6.393 14 C 0.273 3.727 15 O -0.403 6.403 16 N -0.297 5.297 17 C -0.076 4.076 18 C -0.168 4.168 19 C -0.151 4.151 20 C 0.022 3.978 21 H 0.047 0.953 22 C -0.558 4.558 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.520 5.520 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.012 4.012 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.249 0.751 43 H 0.164 0.836 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.823 4.773 -19.425 21.862 hybrid contribution 0.283 -1.038 1.030 1.490 sum -8.539 3.735 -18.395 20.621 Atomic orbital electron populations 1.22188 0.94751 1.02509 1.02827 1.21101 0.94362 0.97791 0.83509 0.88911 1.21990 0.94422 1.01790 0.97392 1.22618 0.95864 0.95967 1.00111 0.89176 1.23016 1.00835 0.98733 0.96359 1.23401 1.00114 0.86970 0.92832 1.89156 1.39001 1.53120 1.48105 1.23548 0.88679 0.96026 0.94562 1.45945 1.65543 1.14957 1.08754 1.20796 0.77667 0.86760 0.85030 1.90247 1.49994 1.15815 1.83213 1.19773 0.81132 0.87413 0.84340 1.90759 1.52255 1.13719 1.83591 1.48461 1.58255 1.10082 1.12879 1.23121 0.97214 0.79930 1.07305 1.21827 0.97544 0.98367 0.99101 1.21664 0.99597 0.98815 0.95022 1.18961 0.92606 0.89203 0.97011 0.95290 1.21098 1.42759 0.95688 0.96211 0.92261 1.25058 0.95351 0.97286 0.96365 1.69873 1.47158 1.07476 1.27503 0.86569 0.78806 0.78854 0.83637 1.20637 1.21189 1.19909 1.22486 0.94832 1.01234 0.82661 0.91681 0.91462 0.92185 0.90495 0.89851 0.90391 0.90315 0.89237 0.92424 0.92096 0.88946 0.75104 0.83552 0.92600 0.92226 0.92515 0.93240 0.93109 0.92656 0.93417 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.23 2.51 -67.93 -0.17 1.06 16 3 H 0.09 0.92 6.93 -51.93 -0.36 0.56 16 4 C -0.12 -0.79 3.97 -26.73 -0.11 -0.90 16 5 C -0.13 -1.07 3.06 -89.05 -0.27 -1.35 16 6 H 0.09 0.94 7.62 -51.93 -0.40 0.54 16 7 C -0.15 -1.11 6.74 -25.16 -0.17 -1.28 16 8 C 0.04 0.35 7.63 37.94 0.29 0.64 16 9 O -0.38 -4.30 11.65 -35.23 -0.41 -4.71 16 10 C 0.05 0.46 6.44 37.93 0.24 0.71 16 11 N -0.70 -8.37 4.44 -54.24 -0.24 -8.61 16 12 C 0.51 8.12 7.78 -11.59 -0.09 8.03 16 13 O -0.51 -8.34 12.68 5.50 0.07 -8.27 16 14 C 0.49 9.82 7.76 -11.58 -0.09 9.73 16 15 O -0.53 -11.84 15.92 5.50 0.09 -11.76 16 16 N -0.57 -11.79 2.98 -173.54 -0.52 -12.31 16 17 C 0.05 0.82 6.24 -3.93 -0.02 0.80 16 18 C -0.13 -2.32 6.06 -26.83 -0.16 -2.48 16 19 C -0.11 -2.35 5.11 -26.69 -0.14 -2.49 16 20 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 22 C -0.52 -14.11 8.56 -34.44 -0.29 -14.40 16 23 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 25 N -0.88 -25.44 11.39 55.43 0.63 -24.80 16 26 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.11 2.63 5.39 -3.71 -0.02 2.61 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.44 7.73 -51.93 -0.40 0.04 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.48 7.74 -51.93 -0.40 0.08 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.41 4.78 8.09 -40.82 -0.33 4.45 16 43 H 0.15 2.52 3.72 -57.17 -0.21 2.31 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 50 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 51 H 0.12 3.43 5.15 -51.93 -0.27 3.16 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -31.28 397.33 -9.03 -40.31 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.67 Total: 5.86 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.95 Total: 2.11 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.13 Total: -45.73 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.25 Total: -24.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.28 -9.03 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328097279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.693 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds