Wall clock time and date at job start Tue Mar 31 2020 20:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46895 * 2 1 4 4 C 1.52993 * 109.46927 * 240.00304 * 2 1 3 5 5 C 1.53000 * 109.47314 * 174.99789 * 4 2 1 6 6 H 1.09001 * 110.45446 * 52.39475 * 5 4 2 7 7 C 1.54505 * 110.51472 * 175.00016 * 5 4 2 8 8 C 1.54484 * 104.06373 * 118.64366 * 7 5 4 9 9 O 1.44426 * 104.80162 * 23.98156 * 8 7 5 10 10 C 1.44423 * 105.27349 * 319.48709 * 9 8 7 11 11 N 1.46496 * 109.47202 * 120.00033 * 2 1 3 12 12 C 1.34773 * 120.00379 * 274.99825 * 11 2 1 13 13 O 1.21352 * 119.99891 * 0.02562 * 12 11 2 14 14 C 1.49450 * 120.00334 * 179.97438 * 12 11 2 15 15 O 1.21348 * 119.99822 * 353.55073 * 14 12 11 16 16 N 1.34783 * 120.00081 * 173.81769 * 14 12 11 17 17 C 1.46928 * 120.62708 * 3.85769 * 16 14 12 18 18 C 1.52768 * 109.00281 * 233.58049 * 17 16 14 19 19 C 1.53039 * 109.38508 * 305.59030 * 18 17 16 20 20 C 1.53039 * 109.53868 * 61.23950 * 19 18 17 21 21 H 1.09003 * 109.52287 * 58.60556 * 20 19 18 22 22 C 1.50697 * 109.49928 * 178.68473 * 20 19 18 23 23 H 1.08005 * 119.99590 * 359.83861 * 22 20 19 24 24 C 1.37878 * 120.00074 * 179.83991 * 22 20 19 25 25 N 1.31511 * 120.00120 * 0.02562 * 24 22 20 26 26 Si 1.86806 * 119.99660 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47043 * 90.00149 * 26 24 22 28 28 H 1.48507 * 109.46727 * 209.99864 * 26 24 22 29 29 H 1.48497 * 109.47374 * 329.99813 * 26 24 22 30 30 C 1.46922 * 120.62937 * 184.13333 * 16 14 12 31 31 H 1.09006 * 109.46701 * 299.99392 * 1 2 3 32 32 H 1.08991 * 109.47401 * 59.99652 * 1 2 3 33 33 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47439 * 294.99915 * 4 2 1 35 35 H 1.09007 * 109.47447 * 54.99786 * 4 2 1 36 36 H 1.08996 * 110.51272 * 237.29027 * 7 5 4 37 37 H 1.09004 * 110.51035 * 359.86056 * 7 5 4 38 38 H 1.08999 * 110.37182 * 142.81109 * 8 7 5 39 39 H 1.09000 * 110.37211 * 265.03544 * 8 7 5 40 40 H 1.09005 * 110.37556 * 281.68163 * 10 9 8 41 41 H 1.08997 * 110.37392 * 159.34900 * 10 9 8 42 42 H 0.97001 * 119.99935 * 95.00450 * 11 2 1 43 43 H 1.08997 * 109.58858 * 353.41146 * 17 16 14 44 44 H 1.08999 * 109.58623 * 113.84525 * 17 16 14 45 45 H 1.09002 * 109.55942 * 185.55413 * 18 17 16 46 46 H 1.08996 * 109.35763 * 65.50162 * 18 17 16 47 47 H 1.09002 * 109.45722 * 301.22482 * 19 18 17 48 48 H 1.08998 * 109.45049 * 181.25873 * 19 18 17 49 49 H 0.97003 * 120.00083 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58779 * 246.15884 * 30 16 14 51 51 H 1.08996 * 109.58545 * 6.44149 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3138 6 1 4.0103 -0.9455 -0.3761 7 6 4.1164 -1.4387 -2.4976 8 6 4.8113 -0.3904 -3.3947 9 8 5.1372 0.6992 -2.5045 10 6 3.9917 0.8362 -1.6356 11 7 2.0184 -0.6906 1.1961 12 6 2.1472 -0.0183 2.3571 13 8 1.8582 1.1590 2.4118 14 6 2.6448 -0.7230 3.5775 15 8 2.8215 -1.9233 3.5553 16 7 2.8923 -0.0261 4.7043 17 6 2.5981 1.4117 4.7750 18 6 3.8546 2.1549 5.2252 19 6 4.3592 1.5509 6.5377 20 6 4.7186 0.0795 6.3191 21 1 5.4812 0.0019 5.5442 22 6 5.2457 -0.5058 7.6039 23 1 5.3199 0.1106 8.4876 24 6 5.6333 -1.8281 7.6511 25 7 5.5435 -2.5786 6.5749 26 14 6.2874 -2.5533 9.2436 27 1 5.1605 -3.1135 10.0320 28 1 7.2593 -3.6325 8.9335 29 1 6.9624 -1.4905 10.0310 30 6 3.4668 -0.6885 5.8832 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7714 -1.2057 35 1 1.6053 -0.2616 -2.1370 36 1 4.8364 -2.1774 -2.1455 37 1 3.3030 -1.9257 -3.0355 38 1 5.7185 -0.8071 -3.8324 39 1 4.1333 -0.0525 -4.1785 40 1 3.1873 1.3636 -2.1484 41 1 4.2692 1.3618 -0.7219 42 1 2.2492 -1.6317 1.1525 43 1 2.2951 1.7715 3.7917 44 1 1.7969 1.5859 5.4931 45 1 3.6209 3.2089 5.3758 46 1 4.6251 2.0584 4.4603 47 1 3.5791 1.6255 7.2953 48 1 5.2428 2.0949 6.8715 49 1 5.8158 -3.5090 6.6082 50 1 2.7378 -0.6891 6.6936 51 1 3.7342 -1.7147 5.6316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328097279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:32 Heat of formation + Delta-G solvation = -135.801791 kcal Electronic energy + Delta-G solvation = -30852.395009 eV Core-core repulsion = 26750.855421 eV Total energy + Delta-G solvation = -4101.539588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.02212 -40.60898 -39.79024 -38.54322 -37.43870 -35.25730 -34.07145 -33.44378 -31.97163 -31.59456 -30.20001 -27.69290 -27.03369 -26.77838 -24.70295 -23.85442 -23.51556 -22.07467 -21.64918 -21.20703 -20.45258 -18.89090 -18.28249 -17.90557 -17.37518 -17.19208 -16.85534 -16.70031 -16.46426 -16.17560 -15.89860 -15.49333 -15.32209 -15.04965 -14.81631 -14.63141 -14.46115 -14.13180 -14.05708 -13.86061 -13.68557 -13.53686 -13.22423 -12.97686 -12.89732 -12.86641 -12.49096 -12.44573 -12.31011 -12.25535 -12.16997 -11.79764 -11.72765 -11.64785 -11.56731 -11.37901 -11.15761 -10.99701 -10.74293 -10.56574 -10.33050 -9.92914 -9.55462 -8.13235 -6.29864 0.37598 1.36227 1.41247 1.42872 1.52387 2.17504 2.40463 2.59443 3.04783 3.15038 3.31539 3.49158 3.73257 3.91005 4.00836 4.14342 4.18358 4.18927 4.19695 4.32718 4.34186 4.44848 4.56001 4.59983 4.64543 4.72605 4.74543 4.81031 4.83818 4.84279 4.89259 4.94829 4.97446 5.04321 5.08352 5.15592 5.18401 5.22031 5.27415 5.30168 5.34984 5.41573 5.55090 5.60517 5.82888 5.88077 5.92545 6.02887 6.28920 6.45665 6.76378 6.83449 7.00103 7.39977 8.90728 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.002865 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.114996 B = 9770.467842 C =10421.480558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.087 0.913 4 C -0.107 4.107 5 C -0.127 4.127 6 H 0.062 0.938 7 C -0.147 4.147 8 C 0.038 3.962 9 O -0.409 6.409 10 C 0.046 3.954 11 N -0.681 5.681 12 C 0.523 3.477 13 O -0.518 6.518 14 C 0.482 3.518 15 O -0.561 6.561 16 N -0.574 5.574 17 C 0.046 3.954 18 C -0.123 4.123 19 C -0.107 4.107 20 C 0.040 3.960 21 H -0.012 1.012 22 C -0.537 4.537 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.914 5.914 26 Si 0.960 3.040 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.265 1.265 30 C 0.121 3.879 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.415 0.585 43 H 0.162 0.838 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.261 0.739 50 H 0.042 0.958 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 5.635 -20.881 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.146 4.146 6 H 0.080 0.920 7 C -0.185 4.185 8 C -0.038 4.038 9 O -0.329 6.329 10 C -0.031 4.031 11 N -0.333 5.333 12 C 0.305 3.695 13 O -0.397 6.397 14 C 0.265 3.735 15 O -0.440 6.440 16 N -0.305 5.305 17 C -0.074 4.074 18 C -0.161 4.161 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.007 0.993 22 C -0.575 4.575 23 H 0.080 0.920 24 C -0.188 4.188 25 N -0.553 5.553 26 Si 0.785 3.215 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.189 1.189 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.252 0.748 43 H 0.178 0.822 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.455 5.796 -20.933 24.106 hybrid contribution 0.804 -1.357 1.410 2.116 sum -9.650 4.438 -19.523 22.225 Atomic orbital electron populations 1.22161 0.93414 1.03096 1.03134 1.21413 0.95286 0.97481 0.82828 0.89533 1.21979 0.92818 1.02642 0.97005 1.22569 0.97161 0.95509 0.99342 0.91955 1.23007 1.01362 0.98236 0.95872 1.23613 1.00989 0.86354 0.92889 1.89117 1.40275 1.54414 1.49062 1.23618 0.88797 0.96714 0.93966 1.45992 1.63849 1.15023 1.08424 1.19887 0.78421 0.86520 0.84714 1.90212 1.50810 1.15575 1.83099 1.20591 0.80251 0.87262 0.85426 1.90727 1.53544 1.15400 1.84357 1.48489 1.58259 1.11390 1.12376 1.23364 0.97595 0.77894 1.08593 1.21797 0.97039 1.00330 0.96922 1.21562 1.00044 0.95886 0.96997 1.18889 0.91714 0.92304 0.94991 0.99340 1.21487 1.42821 0.96101 0.97081 0.91980 1.25885 0.95625 0.97778 0.99542 1.70052 1.48086 1.07525 1.29624 0.85528 0.78229 0.78067 0.79681 1.19961 1.21134 1.18909 1.21934 0.94643 0.99573 0.83939 0.93804 0.88723 0.91470 0.89114 0.86857 0.91395 0.87687 0.88852 0.90364 0.89930 0.90932 0.74802 0.82232 0.91270 0.88319 0.93576 0.92496 0.92865 0.92949 0.93985 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.13 2.10 2.51 44.99 0.11 2.21 16 3 H 0.09 1.55 6.93 -2.39 -0.02 1.53 16 4 C -0.11 -1.10 3.97 30.59 0.12 -0.98 16 5 C -0.13 -1.98 3.06 -9.78 -0.03 -2.01 16 6 H 0.06 1.31 7.62 -2.39 -0.02 1.30 16 7 C -0.15 -1.88 6.74 31.61 0.21 -1.67 16 8 C 0.04 0.54 7.63 72.49 0.55 1.09 16 9 O -0.41 -9.16 11.65 -148.98 -1.74 -10.90 16 10 C 0.05 0.82 6.44 72.49 0.47 1.29 16 11 N -0.68 -15.84 4.44 -443.88 -1.97 -17.81 16 12 C 0.52 16.45 7.78 87.27 0.68 17.12 16 13 O -0.52 -16.26 12.68 -3.25 -0.04 -16.30 16 14 C 0.48 19.84 7.76 87.27 0.68 20.52 16 15 O -0.56 -26.53 15.92 -3.24 -0.05 -26.58 16 16 N -0.57 -24.57 2.98 -821.30 -2.45 -27.02 16 17 C 0.05 1.59 6.24 86.22 0.54 2.13 16 18 C -0.12 -4.23 6.06 30.53 0.19 -4.05 16 19 C -0.11 -4.43 5.11 30.62 0.16 -4.27 16 20 C 0.04 2.08 2.25 -11.46 -0.03 2.06 16 21 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 22 C -0.54 -29.90 8.56 25.60 0.22 -29.68 16 23 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 24 C 0.01 0.63 5.30 84.66 0.45 1.08 16 25 N -0.91 -54.99 11.39 21.45 0.24 -54.74 16 26 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 30 C 0.12 6.16 5.39 86.36 0.47 6.63 16 31 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.61 7.96 -2.38 -0.02 0.59 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 0.79 7.73 -2.39 -0.02 0.77 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.10 7.74 -2.38 -0.02 1.09 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.41 9.48 8.09 -92.71 -0.75 8.73 16 43 H 0.16 5.27 3.72 -85.33 -0.32 4.95 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.08 5.01 5.15 -2.39 -0.01 5.00 16 Total: -1.00 -71.87 397.33 1.35 -70.51 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.13 Total: 26.53 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.46 Total: 10.02 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.17 Total: -99.58 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -1.83 Total: -53.77 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.87 1.35 -70.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328097279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.289 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds