Wall clock time and date at job start Tue Mar 31 2020 20:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46946 * 2 1 4 4 C 1.52996 * 109.46953 * 240.00596 * 2 1 3 5 5 C 1.53001 * 109.47152 * 174.99950 * 4 2 1 6 6 H 1.09004 * 110.83217 * 308.64904 * 5 4 2 7 7 C 1.54811 * 110.91071 * 184.99661 * 5 4 2 8 8 C 1.54098 * 104.19200 * 220.91905 * 7 5 4 9 9 O 1.43745 * 107.29142 * 357.97211 * 8 7 5 10 10 C 1.44382 * 106.97404 * 26.50937 * 9 8 7 11 11 N 1.46498 * 109.47225 * 120.00268 * 2 1 3 12 12 C 1.34772 * 120.00076 * 274.99871 * 11 2 1 13 13 O 1.21351 * 120.00169 * 0.02562 * 12 11 2 14 14 C 1.49450 * 120.00052 * 179.97438 * 12 11 2 15 15 O 1.21353 * 119.99848 * 6.77081 * 14 12 11 16 16 N 1.34769 * 120.00204 * 186.76950 * 14 12 11 17 17 C 1.46931 * 120.63337 * 8.66390 * 16 14 12 18 18 C 1.53189 * 108.77374 * 126.36893 * 17 16 14 19 19 C 1.53041 * 109.31245 * 54.64042 * 18 17 16 20 20 C 1.53042 * 109.54038 * 298.63278 * 19 18 17 21 21 H 1.08998 * 109.49216 * 301.41532 * 20 19 18 22 22 C 1.50695 * 109.49714 * 181.34631 * 20 19 18 23 23 H 1.07995 * 120.00044 * 0.02562 * 22 20 19 24 24 C 1.37881 * 119.99591 * 179.97438 * 22 20 19 25 25 N 1.31510 * 120.00103 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 119.99769 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47002 * 90.00134 * 26 24 22 28 28 H 1.48503 * 109.46914 * 210.00245 * 26 24 22 29 29 H 1.48505 * 109.47136 * 329.99912 * 26 24 22 30 30 C 1.46926 * 120.63166 * 188.39117 * 16 14 12 31 31 H 1.09004 * 109.47127 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47418 * 59.99625 * 1 2 3 33 33 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47534 * 54.99721 * 4 2 1 35 35 H 1.09005 * 109.47500 * 294.99766 * 4 2 1 36 36 H 1.09002 * 110.48667 * 102.24116 * 7 5 4 37 37 H 1.09000 * 110.48433 * 339.60164 * 7 5 4 38 38 H 1.09005 * 109.87791 * 117.39054 * 8 7 5 39 39 H 1.08996 * 109.87957 * 238.39708 * 8 7 5 40 40 H 1.09003 * 110.61843 * 78.44687 * 10 9 8 41 41 H 1.09006 * 110.61919 * 201.43534 * 10 9 8 42 42 H 0.97007 * 119.99888 * 95.00110 * 11 2 1 43 43 H 1.08994 * 109.59109 * 246.16164 * 17 16 14 44 44 H 1.09003 * 109.58271 * 6.44457 * 17 16 14 45 45 H 1.08999 * 109.49620 * 174.58955 * 18 17 16 46 46 H 1.08997 * 109.50444 * 294.65468 * 18 17 16 47 47 H 1.09007 * 109.45768 * 58.65214 * 19 18 17 48 48 H 1.09001 * 109.46206 * 178.60698 * 19 18 17 49 49 H 0.97002 * 119.99869 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58697 * 353.41491 * 30 16 14 51 51 H 1.09004 * 109.59067 * 113.84038 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8850 0.4231 -1.2048 7 6 4.1068 -1.2235 -2.6292 8 6 5.3726 -1.9887 -2.1972 9 8 5.5399 -1.7755 -0.7856 10 6 4.2289 -1.5129 -0.2407 11 7 2.0183 -0.6907 1.1961 12 6 2.1471 -0.0184 2.3571 13 8 1.8581 1.1589 2.4118 14 6 2.6447 -0.7231 3.5774 15 8 3.0487 -1.8646 3.4966 16 7 2.6449 -0.0909 4.7677 17 6 1.9888 1.2146 4.9221 18 6 0.9980 1.1336 6.0876 19 6 1.7291 0.6456 7.3404 20 6 2.2956 -0.7539 7.0900 21 1 1.4840 -1.4337 6.8308 22 6 2.9867 -1.2470 8.3350 23 1 3.0186 -0.6249 9.2172 24 6 3.5774 -2.4928 8.3481 25 7 3.5380 -3.2505 7.2739 26 14 4.4335 -3.1043 9.8916 27 1 3.4584 -3.8316 10.7433 28 1 5.5404 -4.0196 9.5141 29 1 4.9824 -1.9479 10.6444 30 6 3.2962 -0.6969 5.9370 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2058 36 1 4.3605 -0.4361 -3.3390 37 1 3.3764 -1.9073 -3.0618 38 1 5.2495 -3.0528 -2.3993 39 1 6.2390 -1.6068 -2.7373 40 1 3.6707 -2.4413 -0.1192 41 1 4.3069 -0.9838 0.7092 42 1 2.2491 -1.6319 1.1525 43 1 2.7382 1.9777 5.1318 44 1 1.4570 1.4671 4.0047 45 1 0.5749 2.1206 6.2746 46 1 0.1983 0.4364 5.8377 47 1 2.5440 1.3305 7.5753 48 1 1.0317 0.6107 8.1774 49 1 3.9533 -4.1271 7.2832 50 1 3.6247 -1.7064 5.6900 51 1 4.1545 -0.0928 6.2313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328097280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:35 Heat of formation + Delta-G solvation = -115.761504 kcal Electronic energy + Delta-G solvation = -31085.375258 eV Core-core repulsion = 26984.704683 eV Total energy + Delta-G solvation = -4100.670576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71896 -39.69683 -38.41793 -36.87005 -36.40224 -33.44655 -33.02212 -31.74477 -31.10854 -29.77052 -29.67399 -26.30804 -25.96711 -24.99093 -23.49414 -22.66057 -21.79770 -21.09620 -20.92826 -20.05708 -18.80680 -17.25999 -17.08243 -16.56822 -16.14008 -16.06612 -15.63752 -15.44781 -15.19821 -14.74119 -14.50148 -14.10088 -13.90559 -13.72121 -13.66294 -13.32863 -13.15425 -13.03142 -12.86709 -12.58941 -12.47093 -12.36326 -12.14966 -11.79096 -11.77774 -11.51324 -11.34768 -11.06476 -10.98892 -10.96816 -10.87527 -10.69268 -10.43807 -10.28937 -10.11398 -9.87009 -9.84398 -9.25082 -9.21122 -9.10260 -8.58380 -8.43382 -7.81218 -6.00227 -4.08908 1.80059 2.68753 3.31349 3.38676 3.41130 3.63506 3.72861 3.93190 4.13188 4.30979 4.42962 4.56401 4.67366 4.72726 4.78434 4.92996 5.01564 5.08355 5.24606 5.29829 5.32469 5.40633 5.44739 5.49205 5.53154 5.61747 5.63708 5.66509 5.72791 5.74836 5.86765 5.91644 5.99461 6.15286 6.25683 6.37593 6.53579 6.61834 6.69687 6.72076 6.85535 6.99481 7.03493 7.19276 7.23873 7.60704 7.83720 7.94703 7.98059 8.17467 8.36568 8.58974 8.95133 9.56722 11.04982 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.003081 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.413472 B = 9086.864850 C =10590.930878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.117 4.117 5 C -0.124 4.124 6 H 0.088 0.912 7 C -0.152 4.152 8 C 0.044 3.956 9 O -0.376 6.376 10 C 0.049 3.951 11 N -0.703 5.703 12 C 0.510 3.490 13 O -0.516 6.516 14 C 0.491 3.509 15 O -0.520 6.520 16 N -0.568 5.568 17 C 0.072 3.928 18 C -0.133 4.133 19 C -0.113 4.113 20 C 0.041 3.959 21 H 0.029 0.971 22 C -0.520 4.520 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.881 5.881 26 Si 0.893 3.107 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.411 0.589 43 H 0.060 0.940 44 H 0.126 0.874 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.264 0.736 50 H 0.125 0.875 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 6.331 -20.934 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.112 0.888 4 C -0.155 4.155 5 C -0.142 4.142 6 H 0.106 0.894 7 C -0.189 4.189 8 C -0.033 4.033 9 O -0.294 6.294 10 C -0.027 4.027 11 N -0.359 5.359 12 C 0.293 3.707 13 O -0.393 6.393 14 C 0.272 3.728 15 O -0.397 6.397 16 N -0.301 5.301 17 C -0.051 4.051 18 C -0.171 4.171 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.047 0.953 22 C -0.558 4.558 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.518 5.518 26 Si 0.721 3.279 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.012 4.012 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.249 0.751 43 H 0.078 0.922 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.142 0.858 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.731 6.372 -20.879 22.147 hybrid contribution 0.368 -0.788 0.750 1.149 sum -3.363 5.584 -20.129 21.158 Atomic orbital electron populations 1.22183 0.94700 1.02539 1.02851 1.21099 0.94394 0.97761 0.83373 0.88849 1.21907 0.94238 1.01772 0.97608 1.22815 0.95356 1.01106 0.94957 0.89356 1.23006 0.97721 1.00316 0.97886 1.23142 0.97913 0.99288 0.82958 1.88938 1.28131 1.92117 1.20254 1.23855 0.83515 0.97852 0.97496 1.46138 1.65790 1.14978 1.08962 1.20781 0.77825 0.87021 0.85073 1.90466 1.49389 1.15959 1.83530 1.19844 0.81767 0.86666 0.84504 1.90784 1.47421 1.16266 1.85208 1.48426 1.52060 1.20325 1.09241 1.22681 0.96311 0.84082 1.01978 1.21956 0.98207 1.00417 0.96561 1.21659 0.98711 0.99349 0.95325 1.18880 0.94548 0.91078 0.93312 0.95276 1.21081 1.36018 1.01159 0.97590 0.92278 1.25061 0.96073 0.96712 0.96217 1.69877 1.43986 1.10502 1.27453 0.86579 0.79291 0.78752 0.83306 1.20695 1.21161 1.19896 1.22398 0.95298 1.00652 0.82838 0.91640 0.91463 0.92183 0.89526 0.90668 0.90483 0.90474 0.92479 0.90076 0.91969 0.88505 0.75130 0.92211 0.85718 0.92153 0.92471 0.93166 0.93068 0.92636 0.85756 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.12 -0.78 4.30 -26.73 -0.11 -0.90 16 5 C -0.12 -1.02 3.09 -88.61 -0.27 -1.29 16 6 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 7 C -0.15 -1.04 6.60 -25.20 -0.17 -1.21 16 8 C 0.04 0.39 7.70 37.73 0.29 0.68 16 9 O -0.38 -4.92 11.52 -35.23 -0.41 -5.32 16 10 C 0.05 0.56 5.38 38.21 0.21 0.76 16 11 N -0.70 -8.50 3.28 -54.24 -0.18 -8.67 16 12 C 0.51 8.08 7.71 -11.59 -0.09 7.99 16 13 O -0.52 -8.45 12.85 5.50 0.07 -8.38 16 14 C 0.49 9.80 7.73 -11.59 -0.09 9.71 16 15 O -0.52 -11.76 15.93 5.49 0.09 -11.67 16 16 N -0.57 -11.83 2.98 -173.54 -0.52 -12.34 16 17 C 0.07 1.27 5.99 -3.71 -0.02 1.25 16 18 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 19 C -0.11 -2.32 5.11 -26.69 -0.14 -2.46 16 20 C 0.04 1.02 2.24 -91.87 -0.21 0.81 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.52 -14.11 8.57 -34.44 -0.29 -14.40 16 23 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 24 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 25 N -0.88 -25.46 11.39 55.43 0.63 -24.82 16 26 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.11 2.62 5.39 -3.93 -0.02 2.60 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.47 7.98 -51.93 -0.41 0.05 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.43 7.86 -51.93 -0.41 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.66 7.34 -51.93 -0.38 0.28 16 41 H 0.10 1.29 7.17 -51.93 -0.37 0.91 16 42 H 0.41 4.88 6.37 -40.82 -0.26 4.62 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.13 2.13 4.31 -54.80 -0.24 1.89 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.12 3.47 5.12 -51.93 -0.27 3.20 16 51 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -31.33 393.93 -9.01 -40.34 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.61 Total: 5.99 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.00 Total: 2.74 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.06 Total: -45.84 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.25 Total: -25.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.33 -9.01 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328097280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.426 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds