Wall clock time and date at job start Tue Mar 31 2020 20:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46946 * 2 1 4 4 C 1.52996 * 109.46953 * 240.00596 * 2 1 3 5 5 C 1.53001 * 109.47152 * 174.99950 * 4 2 1 6 6 H 1.09004 * 110.83217 * 308.64904 * 5 4 2 7 7 C 1.54811 * 110.91071 * 184.99661 * 5 4 2 8 8 C 1.54098 * 104.19200 * 220.91905 * 7 5 4 9 9 O 1.43745 * 107.29142 * 357.97211 * 8 7 5 10 10 C 1.44382 * 106.97404 * 26.50937 * 9 8 7 11 11 N 1.46498 * 109.47225 * 120.00268 * 2 1 3 12 12 C 1.34772 * 120.00076 * 274.99871 * 11 2 1 13 13 O 1.21351 * 120.00169 * 0.02562 * 12 11 2 14 14 C 1.49450 * 120.00052 * 179.97438 * 12 11 2 15 15 O 1.21353 * 119.99848 * 6.77081 * 14 12 11 16 16 N 1.34769 * 120.00204 * 186.76950 * 14 12 11 17 17 C 1.46931 * 120.63337 * 8.66390 * 16 14 12 18 18 C 1.53189 * 108.77374 * 126.36893 * 17 16 14 19 19 C 1.53041 * 109.31245 * 54.64042 * 18 17 16 20 20 C 1.53042 * 109.54038 * 298.63278 * 19 18 17 21 21 H 1.08998 * 109.49216 * 301.41532 * 20 19 18 22 22 C 1.50695 * 109.49714 * 181.34631 * 20 19 18 23 23 H 1.07995 * 120.00044 * 0.02562 * 22 20 19 24 24 C 1.37881 * 119.99591 * 179.97438 * 22 20 19 25 25 N 1.31510 * 120.00103 * 0.02562 * 24 22 20 26 26 Si 1.86803 * 119.99769 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47002 * 90.00134 * 26 24 22 28 28 H 1.48503 * 109.46914 * 210.00245 * 26 24 22 29 29 H 1.48505 * 109.47136 * 329.99912 * 26 24 22 30 30 C 1.46926 * 120.63166 * 188.39117 * 16 14 12 31 31 H 1.09004 * 109.47127 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47418 * 59.99625 * 1 2 3 33 33 H 1.08997 * 109.47295 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47534 * 54.99721 * 4 2 1 35 35 H 1.09005 * 109.47500 * 294.99766 * 4 2 1 36 36 H 1.09002 * 110.48667 * 102.24116 * 7 5 4 37 37 H 1.09000 * 110.48433 * 339.60164 * 7 5 4 38 38 H 1.09005 * 109.87791 * 117.39054 * 8 7 5 39 39 H 1.08996 * 109.87957 * 238.39708 * 8 7 5 40 40 H 1.09003 * 110.61843 * 78.44687 * 10 9 8 41 41 H 1.09006 * 110.61919 * 201.43534 * 10 9 8 42 42 H 0.97007 * 119.99888 * 95.00110 * 11 2 1 43 43 H 1.08994 * 109.59109 * 246.16164 * 17 16 14 44 44 H 1.09003 * 109.58271 * 6.44457 * 17 16 14 45 45 H 1.08999 * 109.49620 * 174.58955 * 18 17 16 46 46 H 1.08997 * 109.50444 * 294.65468 * 18 17 16 47 47 H 1.09007 * 109.45768 * 58.65214 * 19 18 17 48 48 H 1.09001 * 109.46206 * 178.60698 * 19 18 17 49 49 H 0.97002 * 119.99869 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58697 * 353.41491 * 30 16 14 51 51 H 1.09004 * 109.59067 * 113.84038 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.8850 0.4231 -1.2048 7 6 4.1068 -1.2235 -2.6292 8 6 5.3726 -1.9887 -2.1972 9 8 5.5399 -1.7755 -0.7856 10 6 4.2289 -1.5129 -0.2407 11 7 2.0183 -0.6907 1.1961 12 6 2.1471 -0.0184 2.3571 13 8 1.8581 1.1589 2.4118 14 6 2.6447 -0.7231 3.5774 15 8 3.0487 -1.8646 3.4966 16 7 2.6449 -0.0909 4.7677 17 6 1.9888 1.2146 4.9221 18 6 0.9980 1.1336 6.0876 19 6 1.7291 0.6456 7.3404 20 6 2.2956 -0.7539 7.0900 21 1 1.4840 -1.4337 6.8308 22 6 2.9867 -1.2470 8.3350 23 1 3.0186 -0.6249 9.2172 24 6 3.5774 -2.4928 8.3481 25 7 3.5380 -3.2505 7.2739 26 14 4.4335 -3.1043 9.8916 27 1 3.4584 -3.8316 10.7433 28 1 5.5404 -4.0196 9.5141 29 1 4.9824 -1.9479 10.6444 30 6 3.2962 -0.6969 5.9370 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2058 36 1 4.3605 -0.4361 -3.3390 37 1 3.3764 -1.9073 -3.0618 38 1 5.2495 -3.0528 -2.3993 39 1 6.2390 -1.6068 -2.7373 40 1 3.6707 -2.4413 -0.1192 41 1 4.3069 -0.9838 0.7092 42 1 2.2491 -1.6319 1.1525 43 1 2.7382 1.9777 5.1318 44 1 1.4570 1.4671 4.0047 45 1 0.5749 2.1206 6.2746 46 1 0.1983 0.4364 5.8377 47 1 2.5440 1.3305 7.5753 48 1 1.0317 0.6107 8.1774 49 1 3.9533 -4.1271 7.2832 50 1 3.6247 -1.7064 5.6900 51 1 4.1545 -0.0928 6.2313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328097280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:35 Heat of formation + Delta-G solvation = -136.098049 kcal Electronic energy + Delta-G solvation = -31086.257117 eV Core-core repulsion = 26984.704683 eV Total energy + Delta-G solvation = -4101.552434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02752 -40.64896 -39.77221 -38.51639 -37.44120 -35.25907 -34.05286 -33.43950 -31.98805 -31.60165 -30.37594 -27.67972 -26.99520 -26.81723 -24.78688 -23.63804 -23.43312 -22.06334 -21.73311 -21.34932 -20.39751 -18.81387 -18.24718 -18.09618 -17.53355 -17.05441 -16.88930 -16.72020 -16.45272 -16.07632 -15.94604 -15.57295 -15.12456 -14.93689 -14.65710 -14.59342 -14.44784 -14.39503 -14.05735 -13.87837 -13.80308 -13.50600 -13.23517 -12.94911 -12.91802 -12.86092 -12.52513 -12.43238 -12.29812 -12.20252 -12.13240 -11.80267 -11.74446 -11.65652 -11.61026 -11.48325 -11.15259 -10.98298 -10.67535 -10.54507 -10.29613 -10.08003 -9.54559 -8.11774 -6.28796 0.37893 1.36400 1.42056 1.43437 1.52761 2.15694 2.41023 2.58527 2.98426 3.16148 3.31079 3.49266 3.67887 3.87490 4.01451 4.12093 4.16609 4.17617 4.20652 4.31565 4.32841 4.41971 4.55440 4.58875 4.67760 4.70468 4.75439 4.80594 4.81462 4.85247 4.89169 4.91018 4.96966 5.03774 5.06308 5.12668 5.18025 5.22513 5.28021 5.30677 5.34830 5.40816 5.52216 5.57219 5.84272 5.92267 5.94035 6.01782 6.29853 6.43937 6.74498 6.83646 7.00276 7.41115 8.91772 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.003081 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.413472 B = 9086.864850 C =10590.930878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.089 0.911 4 C -0.107 4.107 5 C -0.117 4.117 6 H 0.082 0.918 7 C -0.141 4.141 8 C 0.032 3.968 9 O -0.414 6.414 10 C 0.043 3.957 11 N -0.686 5.686 12 C 0.520 3.480 13 O -0.521 6.521 14 C 0.481 3.519 15 O -0.557 6.557 16 N -0.577 5.577 17 C 0.072 3.928 18 C -0.125 4.125 19 C -0.107 4.107 20 C 0.040 3.960 21 H -0.011 1.011 22 C -0.536 4.536 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.913 5.913 26 Si 0.959 3.041 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.263 1.263 30 C 0.121 3.879 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.412 0.588 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.101 0.899 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.261 0.739 50 H 0.085 0.915 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 7.915 -22.877 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.136 4.136 6 H 0.101 0.899 7 C -0.178 4.178 8 C -0.044 4.044 9 O -0.334 6.334 10 C -0.034 4.034 11 N -0.340 5.340 12 C 0.302 3.698 13 O -0.399 6.399 14 C 0.263 3.737 15 O -0.436 6.436 16 N -0.309 5.309 17 C -0.049 4.049 18 C -0.163 4.163 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.007 0.993 22 C -0.575 4.575 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.552 5.552 26 Si 0.784 3.216 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.188 1.188 30 C -0.001 4.001 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.250 0.750 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.958 7.984 -22.858 24.715 hybrid contribution 0.771 -1.316 1.295 2.001 sum -4.187 6.669 -21.563 22.956 Atomic orbital electron populations 1.22160 0.93530 1.02990 1.03168 1.21424 0.95208 0.97533 0.82719 0.89325 1.21911 0.92830 1.02435 0.97269 1.22765 0.96308 1.00036 0.94489 0.89948 1.22985 0.96849 1.00809 0.97192 1.23408 0.99687 1.00260 0.81054 1.88891 1.29308 1.92420 1.22744 1.23881 0.83602 0.98440 0.97462 1.46198 1.64086 1.14973 1.08707 1.19869 0.78516 0.86734 0.84728 1.90442 1.50261 1.15708 1.83491 1.20677 0.80920 0.86426 0.85652 1.90753 1.48832 1.18053 1.85967 1.48451 1.52248 1.21417 1.08735 1.22911 0.96552 0.82585 1.02857 1.21922 0.97501 1.02225 0.94662 1.21555 0.99146 0.96601 0.97149 1.18812 0.93325 0.92960 0.92840 0.99278 1.21481 1.35945 1.01487 0.98538 0.91936 1.25889 0.96826 0.97026 0.99132 1.70063 1.44968 1.10642 1.29506 0.85542 0.78098 0.78330 0.79623 1.20085 1.21227 1.18756 1.21846 0.95254 0.98736 0.84248 0.93850 0.88610 0.91679 0.86177 0.89624 0.88773 0.88395 0.91880 0.89236 0.91747 0.91476 0.74998 0.91078 0.84348 0.88111 0.93265 0.92491 0.92683 0.93005 0.89685 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 71.98 0.68 -1.55 16 2 C 0.13 2.13 2.57 44.99 0.12 2.24 16 3 H 0.09 1.57 7.58 -2.39 -0.02 1.55 16 4 C -0.11 -1.06 4.30 30.59 0.13 -0.93 16 5 C -0.12 -1.70 3.09 -9.49 -0.03 -1.73 16 6 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 7 C -0.14 -1.52 6.60 31.58 0.21 -1.31 16 8 C 0.03 0.54 7.70 72.35 0.56 1.10 16 9 O -0.41 -11.07 11.52 -148.98 -1.72 -12.79 16 10 C 0.04 0.98 5.38 72.66 0.39 1.37 16 11 N -0.69 -16.29 3.28 -443.89 -1.45 -17.75 16 12 C 0.52 16.56 7.71 87.27 0.67 17.23 16 13 O -0.52 -16.58 12.85 -3.25 -0.04 -16.62 16 14 C 0.48 19.99 7.73 87.27 0.67 20.67 16 15 O -0.56 -26.85 15.93 -3.26 -0.05 -26.90 16 16 N -0.58 -24.77 2.98 -821.31 -2.45 -27.22 16 17 C 0.07 2.49 5.99 86.36 0.52 3.00 16 18 C -0.13 -4.21 6.08 30.67 0.19 -4.02 16 19 C -0.11 -4.36 5.11 30.62 0.16 -4.20 16 20 C 0.04 2.06 2.24 -11.61 -0.03 2.03 16 21 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 22 C -0.54 -29.85 8.57 25.60 0.22 -29.63 16 23 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 24 C 0.01 0.61 5.31 84.66 0.45 1.06 16 25 N -0.91 -55.29 11.39 21.45 0.24 -55.04 16 26 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 29 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 30 C 0.12 6.18 5.39 86.22 0.46 6.64 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.75 7.98 -2.38 -0.02 0.73 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.69 7.86 -2.39 -0.02 0.67 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.39 7.34 -2.39 -0.02 1.37 16 41 H 0.07 1.90 7.17 -2.38 -0.02 1.88 16 42 H 0.41 9.87 6.37 -92.70 -0.59 9.28 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.14 4.52 4.31 -47.90 -0.21 4.31 16 45 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.23 8.14 -2.38 -0.02 2.22 16 48 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 50 H 0.08 5.07 5.12 -2.39 -0.01 5.06 16 51 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.88 393.93 2.07 -70.82 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.14 Total: 27.04 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.37 Total: 11.97 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -3.66 Total: -100.01 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -1.81 Total: -56.30 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.88 2.07 -70.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328097280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.283 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds