Wall clock time and date at job start Tue Mar 31 2020 20:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 109.47001 * 2 1 4 4 C 1.53002 * 109.47347 * 240.00296 * 2 1 3 5 5 C 1.53000 * 109.47078 * 174.99967 * 4 2 1 6 6 H 1.09001 * 110.91463 * 57.12974 * 5 4 2 7 7 C 1.55307 * 110.84418 * 180.71392 * 5 4 2 8 8 C 1.54950 * 100.94304 * 152.32336 * 7 5 4 9 9 O 1.43645 * 105.13125 * 323.55345 * 8 7 5 10 10 C 1.43239 * 109.97477 * 24.42856 * 9 8 7 11 11 N 1.46505 * 109.47410 * 119.99809 * 2 1 3 12 12 C 1.34776 * 119.99803 * 275.00368 * 11 2 1 13 13 O 1.21350 * 120.00476 * 359.97438 * 12 11 2 14 14 C 1.49455 * 119.99634 * 179.97438 * 12 11 2 15 15 O 1.21340 * 120.00096 * 6.74579 * 14 12 11 16 16 N 1.34784 * 119.99737 * 186.74236 * 14 12 11 17 17 C 1.46923 * 120.62830 * 8.42525 * 16 14 12 18 18 C 1.53624 * 108.54162 * 126.36836 * 17 16 14 19 19 C 1.53041 * 109.24026 * 54.85172 * 18 17 16 20 20 C 1.53040 * 109.54182 * 298.51365 * 19 18 17 21 21 H 1.09000 * 109.49428 * 301.41196 * 20 19 18 22 22 C 1.50699 * 109.52612 * 181.33413 * 20 19 18 23 23 H 1.08001 * 119.99714 * 0.14091 * 22 20 19 24 24 C 1.37873 * 120.00149 * 180.14210 * 22 20 19 25 25 N 1.31514 * 119.99639 * 0.02562 * 24 22 20 26 26 Si 1.86801 * 120.00079 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47182 * 60.00088 * 26 24 22 28 28 H 1.48499 * 109.46903 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47082 * 299.99948 * 26 24 22 30 30 C 1.46926 * 120.62775 * 188.70607 * 16 14 12 31 31 H 1.09002 * 109.47595 * 59.99872 * 1 2 3 32 32 H 1.08999 * 109.46956 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47304 * 300.00102 * 1 2 3 34 34 H 1.08997 * 109.47164 * 54.99204 * 4 2 1 35 35 H 1.09003 * 109.46539 * 294.99775 * 4 2 1 36 36 H 1.08994 * 111.12710 * 34.40189 * 7 5 4 37 37 H 1.09007 * 111.16054 * 270.25092 * 7 5 4 38 38 H 1.09000 * 110.30820 * 204.63838 * 8 7 5 39 39 H 1.09000 * 110.31107 * 82.46531 * 8 7 5 40 40 H 1.08997 * 109.82851 * 117.80256 * 10 9 8 41 41 H 1.09003 * 109.83018 * 238.77599 * 10 9 8 42 42 H 0.96998 * 120.00078 * 95.00070 * 11 2 1 43 43 H 1.08998 * 109.58703 * 246.19770 * 17 16 14 44 44 H 1.08999 * 109.58871 * 6.62851 * 17 16 14 45 45 H 1.09000 * 109.63564 * 294.86464 * 18 17 16 46 46 H 1.09002 * 109.46011 * 174.73401 * 18 17 16 47 47 H 1.09001 * 109.46263 * 178.48857 * 19 18 17 48 48 H 1.09002 * 109.45869 * 58.53263 * 19 18 17 49 49 H 0.97011 * 119.99732 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.58422 * 353.37325 * 30 16 14 51 51 H 1.08993 * 109.58730 * 113.79952 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 4.0222 -1.0210 -0.4122 7 6 4.1159 -1.3206 -2.5817 8 6 5.4169 -0.5152 -2.8259 9 8 5.0934 0.8375 -2.4670 10 6 4.0029 0.8500 -1.5383 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3571 13 8 1.8588 1.1593 2.4116 14 6 2.6447 -0.7228 3.5776 15 8 3.0483 -1.8643 3.4969 16 7 2.6453 -0.0903 4.7678 17 6 1.9941 1.2178 4.9206 18 6 0.9996 1.1350 6.0886 19 6 1.7320 0.6476 7.3409 20 6 2.2982 -0.7520 7.0906 21 1 1.4864 -1.4321 6.8327 22 6 2.9911 -1.2449 8.3348 23 1 3.0226 -0.6233 9.2175 24 6 3.5846 -2.4892 8.3463 25 7 3.5466 -3.2458 7.2713 26 14 4.4441 -3.0999 9.8884 27 1 3.4705 -3.1565 11.0082 28 1 4.9964 -4.4563 9.6430 29 1 5.5491 -2.1721 10.2396 30 6 3.3026 -0.6931 5.9354 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.6053 -0.2617 -2.1370 35 1 1.7516 -1.7715 -1.2056 36 1 3.4268 -1.2175 -3.4198 37 1 4.3349 -2.3698 -2.3831 38 1 5.7041 -0.5698 -3.8759 39 1 6.2200 -0.8928 -2.1930 40 1 4.3263 1.2883 -0.5942 41 1 3.1735 1.4254 -1.9496 42 1 2.2491 -1.6317 1.1527 43 1 2.7462 1.9781 5.1308 44 1 1.4623 1.4707 4.0033 45 1 0.2000 0.4371 5.8400 46 1 0.5762 2.1218 6.2757 47 1 1.0355 0.6131 8.1786 48 1 2.5470 1.3326 7.5746 49 1 3.9646 -4.1212 7.2793 50 1 3.6344 -1.7014 5.6879 51 1 4.1592 -0.0854 6.2267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328097281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:37 Heat of formation + Delta-G solvation = -140.224761 kcal Electronic energy + Delta-G solvation = -30716.275132 eV Core-core repulsion = 26614.543750 eV Total energy + Delta-G solvation = -4101.731382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.98523 -40.61900 -39.79334 -38.50386 -37.44147 -35.25379 -34.08561 -33.43893 -32.00210 -31.56944 -30.32385 -27.68194 -27.08834 -26.78643 -24.71529 -23.59015 -23.48195 -22.18485 -21.64268 -21.23262 -20.45034 -18.83890 -18.31124 -17.91773 -17.66055 -17.07209 -16.92438 -16.87787 -16.46366 -16.00613 -15.68833 -15.57647 -15.09179 -14.96280 -14.87405 -14.63846 -14.41427 -14.23736 -13.99274 -13.90194 -13.83142 -13.52010 -13.23470 -13.04746 -12.90323 -12.82779 -12.54460 -12.46985 -12.29010 -12.24454 -12.16365 -11.85744 -11.75440 -11.69120 -11.61535 -11.47190 -11.14881 -10.98694 -10.54408 -10.52519 -10.31452 -10.07918 -9.54323 -8.11581 -6.28535 0.38409 1.37198 1.42212 1.44671 1.51376 2.16210 2.41241 2.59514 2.93107 3.16218 3.33608 3.40581 3.65167 3.90573 3.97736 4.11855 4.15187 4.16418 4.27111 4.28422 4.32346 4.42470 4.56880 4.58303 4.64149 4.72245 4.75237 4.80293 4.80910 4.84198 4.88871 4.92583 4.99332 5.00839 5.05456 5.12701 5.17602 5.22158 5.28220 5.30629 5.33291 5.40280 5.52076 5.56855 5.83964 5.93676 6.02004 6.04379 6.30154 6.44685 6.75936 6.83711 7.00549 7.41194 8.91820 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.002714 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.914213 B =10312.592097 C =11264.415150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.085 0.915 4 C -0.106 4.106 5 C -0.125 4.125 6 H 0.071 0.929 7 C -0.142 4.142 8 C 0.040 3.960 9 O -0.412 6.412 10 C 0.051 3.949 11 N -0.682 5.682 12 C 0.520 3.480 13 O -0.523 6.523 14 C 0.483 3.517 15 O -0.557 6.557 16 N -0.577 5.577 17 C 0.072 3.928 18 C -0.125 4.125 19 C -0.107 4.107 20 C 0.040 3.960 21 H -0.011 1.011 22 C -0.537 4.537 23 H 0.062 0.938 24 C 0.012 3.988 25 N -0.913 5.913 26 Si 0.958 3.042 27 H -0.269 1.269 28 H -0.287 1.287 29 H -0.268 1.268 30 C 0.121 3.879 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.415 0.585 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.261 0.739 50 H 0.086 0.914 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 6.687 -21.786 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.103 0.897 4 C -0.143 4.143 5 C -0.144 4.144 6 H 0.089 0.911 7 C -0.180 4.180 8 C -0.036 4.036 9 O -0.332 6.332 10 C -0.025 4.025 11 N -0.335 5.335 12 C 0.301 3.699 13 O -0.401 6.401 14 C 0.265 3.735 15 O -0.437 6.437 16 N -0.309 5.309 17 C -0.049 4.049 18 C -0.163 4.163 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.008 0.992 22 C -0.576 4.576 23 H 0.080 0.920 24 C -0.188 4.188 25 N -0.551 5.551 26 Si 0.784 3.216 27 H -0.194 1.194 28 H -0.213 1.213 29 H -0.193 1.193 30 C -0.001 4.001 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.252 0.748 43 H 0.089 0.911 44 H 0.157 0.843 45 H 0.068 0.932 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.364 6.945 -21.949 23.432 hybrid contribution 0.838 -1.312 1.456 2.132 sum -3.526 5.633 -20.493 21.544 Atomic orbital electron populations 1.22168 0.93581 1.03087 1.03098 1.21393 0.95198 0.97429 0.82903 0.89670 1.21876 0.92739 1.02758 0.96930 1.22753 0.97470 0.94874 0.99311 0.91050 1.23313 0.96631 1.00539 0.97488 1.23569 0.97478 0.81154 1.01413 1.88371 1.53044 1.28071 1.63752 1.23294 0.89575 0.97390 0.92256 1.45982 1.64041 1.15017 1.08473 1.19883 0.78494 0.86702 0.84775 1.90444 1.50366 1.15794 1.83521 1.20649 0.80862 0.86401 0.85571 1.90739 1.48939 1.18038 1.85958 1.48466 1.52227 1.21362 1.08842 1.23004 0.96555 0.82518 1.02833 1.21997 0.97477 1.02163 0.94672 1.21557 0.99137 0.96646 0.97133 1.18883 0.93285 0.92903 0.92836 0.99240 1.21456 1.35925 1.01625 0.98579 0.91991 1.25876 0.96818 0.96976 0.99124 1.70059 1.44804 1.10780 1.29489 0.85604 0.78968 0.77278 0.79782 1.19448 1.21254 1.19338 1.21935 0.95149 0.98750 0.84229 0.88799 0.91486 0.93832 0.87079 0.88938 0.88436 0.88658 0.88243 0.92787 0.93443 0.89666 0.74798 0.91075 0.84345 0.93243 0.88218 0.92731 0.92497 0.92974 0.89612 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.13 2.15 2.49 44.99 0.11 2.26 16 3 H 0.09 1.57 6.78 -2.38 -0.02 1.55 16 4 C -0.11 -1.09 4.14 30.59 0.13 -0.96 16 5 C -0.13 -1.80 2.92 -9.53 -0.03 -1.83 16 6 H 0.07 1.31 7.76 -2.39 -0.02 1.29 16 7 C -0.14 -1.58 6.62 32.05 0.21 -1.37 16 8 C 0.04 0.61 7.78 72.65 0.57 1.17 16 9 O -0.41 -8.93 11.36 -148.98 -1.69 -10.62 16 10 C 0.05 0.93 6.49 72.45 0.47 1.40 16 11 N -0.68 -15.77 4.53 -443.85 -2.01 -17.78 16 12 C 0.52 16.31 7.71 87.27 0.67 16.98 16 13 O -0.52 -16.60 12.84 -3.25 -0.04 -16.64 16 14 C 0.48 19.70 7.73 87.27 0.67 20.38 16 15 O -0.56 -26.30 15.93 -3.22 -0.05 -26.35 16 16 N -0.58 -24.46 2.97 -819.67 -2.43 -26.89 16 17 C 0.07 2.47 6.01 86.51 0.52 2.99 16 18 C -0.13 -4.18 6.10 30.82 0.19 -4.00 16 19 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 20 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 21 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 22 C -0.54 -29.67 8.57 25.60 0.22 -29.45 16 23 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 24 C 0.01 0.66 5.30 84.65 0.45 1.11 16 25 N -0.91 -54.56 11.39 21.45 0.24 -54.32 16 26 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 30 C 0.12 6.10 5.41 86.36 0.47 6.57 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.68 8.07 -2.39 -0.02 0.66 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.77 8.04 -2.39 -0.02 0.75 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.27 7.74 -2.39 -0.02 1.25 16 42 H 0.41 9.28 8.09 -92.71 -0.75 8.53 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.14 4.50 4.30 -48.57 -0.21 4.30 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 50 H 0.09 5.03 5.12 -2.39 -0.01 5.02 16 51 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -70.95 398.05 1.48 -69.46 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.03 Total: 25.69 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.46 Total: 11.48 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.20 Total: -98.99 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -1.78 Total: -53.61 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.95 1.48 -69.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328097281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.761 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds