Wall clock time and date at job start Tue Mar 31 2020 20:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47407 * 2 1 4 4 C 1.52993 * 109.47369 * 119.99923 * 2 1 3 5 5 H 1.09006 * 109.47263 * 300.00421 * 4 2 1 6 6 C 1.52995 * 109.47605 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46976 * 59.99837 * 4 2 1 8 8 C 1.34780 * 119.99963 * 251.00419 * 7 4 2 9 9 O 1.21351 * 119.99804 * 187.31193 * 8 7 4 10 10 C 1.49446 * 120.00216 * 7.04259 * 8 7 4 11 11 O 1.21348 * 119.99774 * 6.99958 * 10 8 7 12 12 N 1.34775 * 120.00416 * 187.00996 * 10 8 7 13 13 C 1.47022 * 125.64340 * 359.68406 * 12 10 8 14 14 C 1.54332 * 107.26452 * 178.85182 * 13 12 10 15 15 C 1.55162 * 103.02070 * 338.14263 * 14 13 12 16 16 O 1.42898 * 111.00442 * 277.22874 * 15 14 13 17 17 C 1.50706 * 111.03548 * 153.39242 * 15 14 13 18 18 H 1.07997 * 119.99959 * 271.17782 * 17 15 14 19 19 C 1.37879 * 119.99573 * 91.18081 * 17 15 14 20 20 N 1.31520 * 119.99745 * 169.13429 * 19 17 15 21 21 Si 1.86792 * 120.00230 * 349.13047 * 19 17 15 22 22 H 1.48498 * 109.47185 * 84.18674 * 21 19 17 23 23 H 1.48506 * 109.47426 * 204.18527 * 21 19 17 24 24 H 1.48505 * 109.47351 * 324.18423 * 21 19 17 25 25 C 1.47423 * 125.65068 * 179.97438 * 12 10 8 26 26 C 1.46500 * 120.00311 * 71.00726 * 7 4 2 27 27 C 1.52993 * 117.50373 * 196.15959 * 26 7 4 28 28 C 1.52996 * 60.00317 * 252.50828 * 27 26 7 29 29 H 1.09004 * 109.47011 * 59.99534 * 1 2 3 30 30 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47052 * 300.00253 * 1 2 3 32 32 H 1.08997 * 109.47277 * 240.00244 * 2 1 3 33 33 H 1.08991 * 109.47369 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46958 * 300.00287 * 3 2 1 35 35 H 1.08998 * 109.47221 * 59.99851 * 3 2 1 36 36 H 1.09010 * 109.47210 * 60.00363 * 6 4 2 37 37 H 1.08999 * 109.47532 * 180.02562 * 6 4 2 38 38 H 1.08997 * 109.47383 * 300.00531 * 6 4 2 39 39 H 1.09002 * 109.88662 * 298.39574 * 13 12 10 40 40 H 1.08999 * 109.88514 * 59.56516 * 13 12 10 41 41 H 1.08999 * 110.85516 * 219.67250 * 14 13 12 42 42 H 1.09006 * 110.51697 * 96.45016 * 14 13 12 43 43 H 0.96700 * 114.00173 * 177.29874 * 16 15 14 44 44 H 0.96997 * 119.99873 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.36315 * 322.92229 * 25 12 10 46 46 H 1.08999 * 110.36950 * 85.14035 * 25 12 10 47 47 H 1.09000 * 115.54595 * 341.86846 * 26 7 4 48 48 H 1.08998 * 117.49778 * 0.02562 * 27 26 7 49 49 H 1.08998 * 117.49983 * 145.01880 * 27 26 7 50 50 H 1.08995 * 117.50047 * 252.50950 * 28 27 26 51 51 H 1.08997 * 117.49711 * 107.48556 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 7 1.5517 -2.1024 1.2492 8 6 0.6050 -2.4824 2.1301 9 8 0.2955 -3.6523 2.2211 10 6 -0.0592 -1.4640 2.9991 11 8 0.1594 -0.2831 2.8255 12 7 -0.9007 -1.8572 3.9756 13 6 -1.2583 -3.2482 4.2899 14 6 -2.2222 -3.2123 5.4947 15 6 -1.9173 -1.8371 6.1455 16 8 -0.7749 -1.9170 7.0002 17 6 -3.1154 -1.3169 6.8972 18 1 -3.8525 -0.7139 6.3877 19 6 -3.2705 -1.6107 8.2353 20 7 -4.1893 -0.9899 8.9427 21 14 -2.1759 -2.8904 9.0436 22 1 -0.8983 -2.2577 9.4591 23 1 -2.8632 -3.4476 10.2363 24 1 -1.8960 -3.9834 8.0780 25 6 -1.6197 -0.9634 4.9017 26 6 2.0923 -3.0706 0.2918 27 6 1.3048 -4.3641 0.0741 28 6 2.6242 -4.3928 0.8482 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9564 0.8899 36 1 3.9338 0.3058 1.2487 37 1 3.9333 -1.2360 2.1386 38 1 3.9330 -1.2358 0.3589 39 1 -1.7505 -3.7072 3.4325 40 1 -0.3624 -3.8113 4.5511 41 1 -2.0058 -4.0241 6.1891 42 1 -3.2577 -3.2580 5.1570 43 1 -0.5209 -1.0727 7.3972 44 1 -4.2981 -1.1964 9.8842 45 1 -0.9914 -0.1157 5.1751 46 1 -2.5485 -0.6160 4.4492 47 1 2.6069 -2.6434 -0.5689 48 1 0.3843 -4.4947 0.6430 49 1 1.3011 -4.7881 -0.9300 50 1 3.4885 -4.8357 0.3533 51 1 2.5719 -4.5424 1.9266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332356947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:21 Heat of formation + Delta-G solvation = -57.833770 kcal Electronic energy + Delta-G solvation = -32137.705230 eV Core-core repulsion = 28039.546589 eV Total energy + Delta-G solvation = -4098.158641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20711 -39.26572 -37.96627 -37.38395 -35.98460 -34.81043 -32.93253 -32.41956 -30.50691 -30.02388 -28.49479 -26.98719 -26.19959 -24.47031 -23.68079 -22.72558 -22.45820 -21.28510 -20.23273 -19.83291 -18.85316 -17.64682 -17.14041 -16.60806 -16.29027 -15.92722 -15.43833 -15.11551 -15.00566 -14.59015 -14.54471 -14.22118 -14.02692 -13.62888 -13.56430 -13.53389 -13.05507 -12.76679 -12.63330 -12.39291 -12.27007 -12.20017 -12.12504 -11.87043 -11.68744 -11.65274 -11.44631 -11.38465 -11.07003 -10.99527 -10.93257 -10.67967 -10.49843 -10.48148 -10.41066 -10.27467 -10.11458 -9.34601 -8.86928 -8.81829 -8.56346 -8.52433 -8.20925 -6.26970 -4.37413 1.54649 2.33580 3.28245 3.40392 3.44210 3.47970 3.61181 3.81481 4.28754 4.42295 4.57855 4.70167 4.80229 4.87061 4.95397 4.96015 5.01106 5.11288 5.17545 5.31510 5.37762 5.39704 5.46772 5.61246 5.64117 5.68078 5.72056 5.73547 5.77044 5.86359 5.90106 5.92563 5.96813 6.00305 6.10545 6.14541 6.19151 6.25316 6.32517 6.40694 6.49054 6.58859 6.67069 6.75561 7.01710 7.11048 7.36419 7.58810 7.83664 8.05342 8.19325 8.59213 8.76203 9.34904 10.82013 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.003476 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.266860 B = 8053.439293 C = 8841.596279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.098 3.902 5 H 0.153 0.847 6 C -0.161 4.161 7 N -0.550 5.550 8 C 0.510 3.490 9 O -0.511 6.511 10 C 0.511 3.489 11 O -0.523 6.523 12 N -0.571 5.571 13 C 0.108 3.892 14 C -0.128 4.128 15 C 0.220 3.780 16 O -0.562 6.562 17 C -0.556 4.556 18 H 0.082 0.918 19 C 0.078 3.922 20 N -0.883 5.883 21 Si 0.940 3.060 22 H -0.287 1.287 23 H -0.322 1.322 24 H -0.269 1.269 25 C 0.088 3.912 26 C 0.069 3.931 27 C -0.191 4.191 28 C -0.184 4.184 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.374 0.626 44 H 0.268 0.732 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.128 0.872 48 H 0.134 0.866 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.677 -1.097 -17.814 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.003 4.003 5 H 0.170 0.830 6 C -0.219 4.219 7 N -0.281 5.281 8 C 0.294 3.706 9 O -0.387 6.387 10 C 0.294 3.706 11 O -0.404 6.404 12 N -0.302 5.302 13 C -0.015 4.015 14 C -0.166 4.166 15 C 0.179 3.821 16 O -0.370 6.370 17 C -0.594 4.594 18 H 0.100 0.900 19 C -0.127 4.127 20 N -0.517 5.517 21 Si 0.774 3.226 22 H -0.214 1.214 23 H -0.252 1.252 24 H -0.195 1.195 25 C -0.033 4.033 26 C -0.035 4.035 27 C -0.228 4.228 28 C -0.223 4.223 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.222 0.778 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.526 -1.666 -17.910 22.505 hybrid contribution 0.583 -0.115 0.407 0.720 sum 14.109 -1.781 -17.503 22.552 Atomic orbital electron populations 1.21877 0.94768 1.01424 1.02344 1.21310 0.96648 0.96199 0.97167 1.21842 1.00656 0.95514 1.02241 1.22520 0.94023 0.80261 1.03520 0.83048 1.22198 0.95127 1.02464 1.02069 1.47268 1.37296 1.11278 1.32266 1.20265 0.80444 0.88600 0.81319 1.90603 1.63396 1.17983 1.66694 1.19665 0.80901 0.88500 0.81520 1.90434 1.62005 1.17923 1.70018 1.48478 1.41246 1.10466 1.30026 1.22276 0.99453 0.81291 0.98456 1.23100 0.98724 0.99772 0.94983 1.20215 0.84989 0.91064 0.85817 1.86139 1.49522 1.36968 1.64334 1.21085 1.07407 1.35602 0.95259 0.89995 1.25068 0.95299 0.95407 0.96971 1.69975 1.33809 1.39728 1.08223 0.85910 0.78455 0.81702 0.76573 1.21443 1.25222 1.19484 1.23287 0.95732 0.93802 0.90491 1.21640 1.03270 0.84161 0.94394 1.23765 0.98976 0.98526 1.01554 1.23232 0.97566 1.00173 1.01285 0.93461 0.93708 0.90626 0.92081 0.92593 0.92777 0.91921 0.90956 0.92397 0.92703 0.91167 0.91283 0.89853 0.89557 0.77791 0.92262 0.90594 0.90295 0.85397 0.84802 0.89236 0.88743 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.27 37.16 0.31 -1.45 16 2 C -0.09 -0.96 2.51 -90.62 -0.23 -1.19 16 3 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 4 C 0.10 1.12 1.91 -67.94 -0.13 0.99 16 5 H 0.15 2.11 4.35 -54.91 -0.24 1.87 16 6 C -0.16 -1.48 8.66 37.16 0.32 -1.16 16 7 N -0.55 -6.91 2.10 -159.09 -0.33 -7.24 16 8 C 0.51 7.82 6.88 -11.59 -0.08 7.74 16 9 O -0.51 -8.32 9.92 5.50 0.05 -8.26 16 10 C 0.51 8.63 7.66 -11.59 -0.09 8.54 16 11 O -0.52 -8.92 10.86 5.50 0.06 -8.87 16 12 N -0.57 -10.27 3.33 -171.04 -0.57 -10.83 16 13 C 0.11 1.90 5.49 -3.06 -0.02 1.88 16 14 C -0.13 -2.50 5.79 -24.89 -0.14 -2.65 16 15 C 0.22 4.70 0.70 -89.63 -0.06 4.64 16 16 O -0.56 -11.95 9.09 -35.23 -0.32 -12.27 16 17 C -0.56 -14.18 8.83 -34.44 -0.30 -14.49 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 20 N -0.88 -25.40 13.96 55.43 0.77 -24.62 16 21 Si 0.94 22.49 24.86 -169.99 -4.23 18.26 16 22 H -0.29 -6.76 7.06 56.52 0.40 -6.36 16 23 H -0.32 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -6.31 5.35 56.52 0.30 -6.00 16 25 C 0.09 1.70 6.09 -2.54 -0.02 1.69 16 26 C 0.07 0.74 5.40 -67.93 -0.37 0.37 16 27 C -0.19 -2.13 9.62 -26.74 -0.26 -2.38 16 28 C -0.18 -1.97 9.87 -26.73 -0.26 -2.23 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.59 7.21 -51.93 -0.37 0.21 16 31 H 0.07 1.06 6.18 -51.93 -0.32 0.74 16 32 H 0.06 0.58 7.58 -51.93 -0.39 0.18 16 33 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.58 6.43 -51.92 -0.33 0.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.44 7.05 -51.93 -0.37 0.08 16 39 H 0.07 1.16 7.57 -51.93 -0.39 0.77 16 40 H 0.07 1.24 7.73 -51.93 -0.40 0.84 16 41 H 0.08 1.69 6.27 -51.93 -0.33 1.37 16 42 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 43 H 0.37 7.17 8.93 45.56 0.41 7.57 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 46 H 0.08 1.53 7.98 -51.93 -0.41 1.12 16 47 H 0.13 1.10 7.08 -51.93 -0.37 0.73 16 48 H 0.13 1.85 5.25 -52.02 -0.27 1.58 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.10 1.26 7.57 -51.93 -0.39 0.87 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -28.62 380.45 -7.47 -36.09 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -7.55 Total: 10.68 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.10 Total: 1.34 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.13 Total: -42.70 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.21 Total: -29.40 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.23 Total: 18.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.62 -7.47 -36.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.744 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds