Wall clock time and date at job start Tue Mar 31 2020 20:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47407 * 2 1 4 4 C 1.52993 * 109.47369 * 119.99923 * 2 1 3 5 5 H 1.09006 * 109.47263 * 300.00421 * 4 2 1 6 6 C 1.52995 * 109.47605 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46976 * 59.99837 * 4 2 1 8 8 C 1.34780 * 119.99963 * 251.00419 * 7 4 2 9 9 O 1.21351 * 119.99804 * 187.31193 * 8 7 4 10 10 C 1.49446 * 120.00216 * 7.04259 * 8 7 4 11 11 O 1.21348 * 119.99774 * 6.99958 * 10 8 7 12 12 N 1.34775 * 120.00416 * 187.00996 * 10 8 7 13 13 C 1.47022 * 125.64340 * 359.68406 * 12 10 8 14 14 C 1.54332 * 107.26452 * 178.85182 * 13 12 10 15 15 C 1.55162 * 103.02070 * 338.14263 * 14 13 12 16 16 O 1.42898 * 111.00442 * 277.22874 * 15 14 13 17 17 C 1.50706 * 111.03548 * 153.39242 * 15 14 13 18 18 H 1.07997 * 119.99959 * 271.17782 * 17 15 14 19 19 C 1.37879 * 119.99573 * 91.18081 * 17 15 14 20 20 N 1.31520 * 119.99745 * 169.13429 * 19 17 15 21 21 Si 1.86792 * 120.00230 * 349.13047 * 19 17 15 22 22 H 1.48498 * 109.47185 * 84.18674 * 21 19 17 23 23 H 1.48506 * 109.47426 * 204.18527 * 21 19 17 24 24 H 1.48505 * 109.47351 * 324.18423 * 21 19 17 25 25 C 1.47423 * 125.65068 * 179.97438 * 12 10 8 26 26 C 1.46500 * 120.00311 * 71.00726 * 7 4 2 27 27 C 1.52993 * 117.50373 * 196.15959 * 26 7 4 28 28 C 1.52996 * 60.00317 * 252.50828 * 27 26 7 29 29 H 1.09004 * 109.47011 * 59.99534 * 1 2 3 30 30 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47052 * 300.00253 * 1 2 3 32 32 H 1.08997 * 109.47277 * 240.00244 * 2 1 3 33 33 H 1.08991 * 109.47369 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46958 * 300.00287 * 3 2 1 35 35 H 1.08998 * 109.47221 * 59.99851 * 3 2 1 36 36 H 1.09010 * 109.47210 * 60.00363 * 6 4 2 37 37 H 1.08999 * 109.47532 * 180.02562 * 6 4 2 38 38 H 1.08997 * 109.47383 * 300.00531 * 6 4 2 39 39 H 1.09002 * 109.88662 * 298.39574 * 13 12 10 40 40 H 1.08999 * 109.88514 * 59.56516 * 13 12 10 41 41 H 1.08999 * 110.85516 * 219.67250 * 14 13 12 42 42 H 1.09006 * 110.51697 * 96.45016 * 14 13 12 43 43 H 0.96700 * 114.00173 * 177.29874 * 16 15 14 44 44 H 0.96997 * 119.99873 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.36315 * 322.92229 * 25 12 10 46 46 H 1.08999 * 110.36950 * 85.14035 * 25 12 10 47 47 H 1.09000 * 115.54595 * 341.86846 * 26 7 4 48 48 H 1.08998 * 117.49778 * 0.02562 * 27 26 7 49 49 H 1.08998 * 117.49983 * 145.01880 * 27 26 7 50 50 H 1.08995 * 117.50047 * 252.50950 * 28 27 26 51 51 H 1.08997 * 117.49711 * 107.48556 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2489 7 7 1.5517 -2.1024 1.2492 8 6 0.6050 -2.4824 2.1301 9 8 0.2955 -3.6523 2.2211 10 6 -0.0592 -1.4640 2.9991 11 8 0.1594 -0.2831 2.8255 12 7 -0.9007 -1.8572 3.9756 13 6 -1.2583 -3.2482 4.2899 14 6 -2.2222 -3.2123 5.4947 15 6 -1.9173 -1.8371 6.1455 16 8 -0.7749 -1.9170 7.0002 17 6 -3.1154 -1.3169 6.8972 18 1 -3.8525 -0.7139 6.3877 19 6 -3.2705 -1.6107 8.2353 20 7 -4.1893 -0.9899 8.9427 21 14 -2.1759 -2.8904 9.0436 22 1 -0.8983 -2.2577 9.4591 23 1 -2.8632 -3.4476 10.2363 24 1 -1.8960 -3.9834 8.0780 25 6 -1.6197 -0.9634 4.9017 26 6 2.0923 -3.0706 0.2918 27 6 1.3048 -4.3641 0.0741 28 6 2.6242 -4.3928 0.8482 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9564 0.8899 36 1 3.9338 0.3058 1.2487 37 1 3.9333 -1.2360 2.1386 38 1 3.9330 -1.2358 0.3589 39 1 -1.7505 -3.7072 3.4325 40 1 -0.3624 -3.8113 4.5511 41 1 -2.0058 -4.0241 6.1891 42 1 -3.2577 -3.2580 5.1570 43 1 -0.5209 -1.0727 7.3972 44 1 -4.2981 -1.1964 9.8842 45 1 -0.9914 -0.1157 5.1751 46 1 -2.5485 -0.6160 4.4492 47 1 2.6069 -2.6434 -0.5689 48 1 0.3843 -4.4947 0.6430 49 1 1.3011 -4.7881 -0.9300 50 1 3.4885 -4.8357 0.3533 51 1 2.5719 -4.5424 1.9266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332356947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:20 Heat of formation + Delta-G solvation = -76.339955 kcal Electronic energy + Delta-G solvation = -32138.507718 eV Core-core repulsion = 28039.546589 eV Total energy + Delta-G solvation = -4098.961129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.37037 -40.63318 -39.28599 -38.56515 -36.89956 -36.38638 -34.46608 -33.87841 -32.10204 -30.88304 -30.10636 -27.95641 -27.69137 -25.87964 -24.55354 -24.10842 -23.29689 -22.48741 -21.60978 -21.09311 -20.10151 -19.46137 -18.34437 -17.79480 -17.49053 -17.20903 -17.03769 -16.53125 -16.42864 -16.09951 -15.43186 -15.36350 -15.13891 -14.98178 -14.73903 -14.59887 -14.44217 -14.19057 -14.07712 -13.89259 -13.35854 -13.27666 -13.26589 -13.09979 -12.98377 -12.79272 -12.72772 -12.49178 -12.33893 -12.25627 -12.24448 -11.95344 -11.88901 -11.79769 -11.49679 -11.34812 -11.29683 -11.18137 -10.65899 -10.47363 -10.07332 -9.73007 -9.46252 -8.37206 -6.48801 0.29659 1.16717 1.49167 1.51635 1.69235 2.03597 2.24585 2.41963 2.90904 2.95219 3.08969 3.45475 3.71228 3.79725 3.87106 3.98371 4.01125 4.06131 4.13302 4.16916 4.22236 4.35773 4.37409 4.54804 4.63525 4.63996 4.67523 4.76166 4.82870 4.83349 4.89611 4.95286 4.97858 5.02323 5.03569 5.06689 5.15053 5.17186 5.20073 5.30377 5.31171 5.33443 5.46819 5.48274 5.50224 5.67116 6.02033 6.03979 6.25456 6.56428 6.61407 6.91660 6.92574 7.27807 8.75754 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.003476 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.266860 B = 8053.439293 C = 8841.596279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.141 4.141 4 C 0.094 3.906 5 H 0.126 0.874 6 C -0.154 4.154 7 N -0.541 5.541 8 C 0.506 3.494 9 O -0.525 6.525 10 C 0.506 3.494 11 O -0.526 6.526 12 N -0.580 5.580 13 C 0.122 3.878 14 C -0.125 4.125 15 C 0.218 3.782 16 O -0.563 6.563 17 C -0.550 4.550 18 H 0.050 0.950 19 C 0.034 3.966 20 N -0.930 5.930 21 Si 0.993 3.007 22 H -0.278 1.278 23 H -0.331 1.331 24 H -0.259 1.259 25 C 0.099 3.901 26 C 0.068 3.932 27 C -0.196 4.196 28 C -0.179 4.179 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.382 0.618 44 H 0.269 0.731 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.161 0.839 48 H 0.105 0.895 49 H 0.114 0.886 50 H 0.123 0.877 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.662 -1.797 -20.418 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.007 4.007 5 H 0.143 0.857 6 C -0.212 4.212 7 N -0.271 5.271 8 C 0.289 3.711 9 O -0.402 6.402 10 C 0.290 3.710 11 O -0.406 6.406 12 N -0.312 5.312 13 C 0.000 4.000 14 C -0.163 4.163 15 C 0.177 3.823 16 O -0.372 6.372 17 C -0.588 4.588 18 H 0.068 0.932 19 C -0.167 4.167 20 N -0.567 5.567 21 Si 0.826 3.174 22 H -0.205 1.205 23 H -0.263 1.263 24 H -0.185 1.185 25 C -0.023 4.023 26 C -0.035 4.035 27 C -0.234 4.234 28 C -0.217 4.217 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.232 0.768 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.178 0.822 48 H 0.123 0.877 49 H 0.132 0.868 50 H 0.141 0.859 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.552 -2.345 -20.556 26.495 hybrid contribution -0.355 0.196 1.120 1.192 sum 16.197 -2.148 -19.435 25.391 Atomic orbital electron populations 1.21823 0.96394 1.00131 1.01682 1.21298 0.95123 0.97178 0.97153 1.21820 1.01819 0.94327 1.01946 1.22515 0.95707 0.79455 1.03019 0.85740 1.22155 0.92886 1.03605 1.02543 1.47366 1.35994 1.12239 1.31506 1.19981 0.81290 0.87918 0.81924 1.90619 1.64222 1.18092 1.67307 1.20142 0.80481 0.89041 0.81294 1.90472 1.61767 1.18354 1.69971 1.48455 1.42001 1.10112 1.30615 1.22120 0.98846 0.81214 0.97849 1.23022 0.99481 0.98217 0.95618 1.20083 0.83562 0.92525 0.86098 1.86106 1.48924 1.37764 1.64398 1.21284 1.07990 1.34271 0.95265 0.93226 1.25738 0.96391 0.96879 0.97676 1.70081 1.36155 1.41807 1.08656 0.85032 0.77046 0.79902 0.75467 1.20468 1.26296 1.18458 1.22942 0.95741 0.93588 0.90015 1.22005 1.03120 0.83809 0.94584 1.23697 0.97957 0.99234 1.02463 1.23225 0.98336 1.00162 0.99966 0.92149 0.95253 0.93220 0.90087 0.90702 0.91778 0.93562 0.89517 0.93409 0.90712 0.90045 0.91365 0.90197 0.89393 0.76813 0.92248 0.90616 0.91011 0.82208 0.87699 0.86812 0.85937 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.27 71.98 0.60 -2.66 16 2 C -0.09 -1.57 2.51 -10.80 -0.03 -1.60 16 3 C -0.14 -2.14 8.84 71.98 0.64 -1.50 16 4 C 0.09 1.96 1.91 44.99 0.09 2.05 16 5 H 0.13 3.37 4.35 -49.71 -0.22 3.15 16 6 C -0.15 -2.34 8.66 71.98 0.62 -1.72 16 7 N -0.54 -12.61 2.10 -775.61 -1.62 -14.24 16 8 C 0.51 15.17 6.88 87.27 0.60 15.77 16 9 O -0.52 -16.84 9.92 -3.25 -0.03 -16.87 16 10 C 0.51 17.05 7.66 87.27 0.67 17.72 16 11 O -0.53 -18.02 10.86 -3.24 -0.04 -18.05 16 12 N -0.58 -20.79 3.33 -813.41 -2.70 -23.49 16 13 C 0.12 4.23 5.49 86.73 0.48 4.70 16 14 C -0.13 -4.86 5.79 31.79 0.18 -4.68 16 15 C 0.22 9.34 0.70 -10.15 -0.01 9.33 16 16 O -0.56 -23.44 9.09 -148.98 -1.35 -24.80 16 17 C -0.55 -28.71 8.83 25.60 0.23 -28.49 16 18 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 19 C 0.03 1.86 5.45 84.65 0.46 2.32 16 20 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 21 Si 0.99 46.39 24.86 68.60 1.71 48.09 16 22 H -0.28 -12.48 7.06 99.48 0.70 -11.77 16 23 H -0.33 -15.96 7.11 99.48 0.71 -15.25 16 24 H -0.26 -11.61 5.35 99.48 0.53 -11.08 16 25 C 0.10 3.87 6.09 86.85 0.53 4.40 16 26 C 0.07 1.23 5.40 44.99 0.24 1.47 16 27 C -0.20 -3.91 9.62 30.59 0.29 -3.61 16 28 C -0.18 -3.33 9.87 30.59 0.30 -3.03 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.03 0.74 7.21 -2.39 -0.02 0.72 16 31 H 0.05 1.39 6.18 -2.39 -0.01 1.37 16 32 H 0.08 1.17 7.58 -2.39 -0.02 1.16 16 33 H 0.07 0.85 6.43 -2.39 -0.02 0.84 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 1.08 6.43 -2.38 -0.02 1.07 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.86 7.05 -2.39 -0.02 0.84 16 39 H 0.08 2.65 7.57 -2.39 -0.02 2.63 16 40 H 0.07 2.39 7.73 -2.39 -0.02 2.38 16 41 H 0.08 3.16 6.27 -2.39 -0.01 3.14 16 42 H 0.09 3.35 8.03 -2.38 -0.02 3.33 16 43 H 0.38 14.35 8.93 -74.06 -0.66 13.69 16 44 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.08 2.92 8.04 -2.39 -0.02 2.90 16 46 H 0.07 2.87 7.98 -2.39 -0.02 2.85 16 47 H 0.16 1.92 7.08 -2.39 -0.02 1.90 16 48 H 0.11 2.81 5.25 -3.89 -0.02 2.79 16 49 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 Total: -1.00 -63.22 380.45 2.04 -61.18 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.11 Total: 32.40 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.89 Total: 10.47 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -4.03 Total: -92.43 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -1.42 Total: -59.72 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.71 Total: 48.09 kcal Total: -63.22 2.04 -61.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.156 kcal (2) G-P(sol) polarization free energy of solvation -63.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds