Wall clock time and date at job start Tue Mar 31 2020 20:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 C 1.52995 * 109.47164 * 119.99590 * 2 1 3 5 5 H 1.09000 * 109.47256 * 299.99848 * 4 2 1 6 6 C 1.53006 * 109.47234 * 59.99755 * 4 2 1 7 7 N 1.46506 * 109.47330 * 180.02562 * 4 2 1 8 8 C 1.34773 * 120.00172 * 141.45453 * 7 4 2 9 9 O 1.21346 * 119.99785 * 187.30741 * 8 7 4 10 10 C 1.49452 * 119.99938 * 7.58390 * 8 7 4 11 11 O 1.21346 * 120.00111 * 6.01269 * 10 8 7 12 12 N 1.34772 * 119.99899 * 186.01709 * 10 8 7 13 13 C 1.47022 * 125.64834 * 359.68935 * 12 10 8 14 14 C 1.54341 * 107.26754 * 178.84867 * 13 12 10 15 15 C 1.55155 * 103.01867 * 338.14230 * 14 13 12 16 16 O 1.42894 * 111.00708 * 277.23267 * 15 14 13 17 17 C 1.50700 * 111.03699 * 153.39167 * 15 14 13 18 18 H 1.08000 * 120.00290 * 273.45292 * 17 15 14 19 19 C 1.37873 * 119.99915 * 93.45415 * 17 15 14 20 20 N 1.31514 * 120.00094 * 170.34020 * 19 17 15 21 21 Si 1.86807 * 120.00118 * 350.34445 * 19 17 15 22 22 H 1.48496 * 109.47085 * 84.67105 * 21 19 17 23 23 H 1.48496 * 109.47207 * 204.67415 * 21 19 17 24 24 H 1.48503 * 109.46518 * 324.67226 * 21 19 17 25 25 C 1.47429 * 125.65010 * 180.02562 * 12 10 8 26 26 C 1.46496 * 119.99606 * 321.45513 * 7 4 2 27 27 C 1.53002 * 117.49793 * 196.60605 * 26 7 4 28 28 C 1.52994 * 117.49991 * 127.98534 * 26 7 4 29 29 H 1.09007 * 109.47315 * 300.00298 * 1 2 3 30 30 H 1.09002 * 109.47362 * 59.99607 * 1 2 3 31 31 H 1.09001 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46910 * 239.99650 * 2 1 3 33 33 H 1.09007 * 109.47054 * 299.99727 * 3 2 1 34 34 H 1.08993 * 109.47348 * 59.99725 * 3 2 1 35 35 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.46868 * 300.00494 * 6 4 2 37 37 H 1.09007 * 109.46678 * 60.00235 * 6 4 2 38 38 H 1.08999 * 109.47087 * 179.97438 * 6 4 2 39 39 H 1.08997 * 109.88582 * 298.39250 * 13 12 10 40 40 H 1.09002 * 109.88222 * 59.56129 * 13 12 10 41 41 H 1.08998 * 110.85212 * 219.67793 * 14 13 12 42 42 H 1.08995 * 110.51396 * 96.45062 * 14 13 12 43 43 H 0.96704 * 114.00282 * 177.33003 * 16 15 14 44 44 H 0.97002 * 119.99995 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.36380 * 322.92610 * 25 12 10 46 46 H 1.08992 * 110.36928 * 85.13810 * 25 12 10 47 47 H 1.09007 * 115.55334 * 342.31289 * 26 7 4 48 48 H 1.09002 * 117.49980 * 0.02562 * 27 26 7 49 49 H 1.08999 * 117.49716 * 145.02039 * 27 26 7 50 50 H 1.08998 * 117.50027 * 214.97755 * 28 26 7 51 51 H 1.09001 * 117.50017 * 359.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1392 6 6 1.5299 -2.1637 1.2494 7 7 3.5050 -0.7206 1.2496 8 6 4.1786 -0.5470 2.4040 9 8 5.3846 -0.4138 2.3885 10 6 3.4408 -0.5248 3.7035 11 8 2.2530 -0.7713 3.7312 12 7 4.0948 -0.2310 4.8447 13 6 5.5276 0.0793 4.9556 14 6 5.8182 0.3770 6.4419 15 6 4.4231 0.7631 7.0003 16 8 4.1263 2.1352 6.7334 17 6 4.3310 0.4706 8.4757 18 1 4.0374 -0.5121 8.8142 19 6 4.6216 1.4575 9.3936 20 7 4.3613 1.2670 10.6686 21 14 5.3851 3.0652 8.8263 22 1 4.3143 3.9894 8.3743 23 1 6.1302 3.6838 9.9520 24 1 6.3178 2.8004 7.7014 25 6 3.4935 -0.1745 6.1896 26 6 4.2378 -0.9088 -0.0049 27 6 5.7174 -1.2861 0.0910 28 6 5.3140 0.1205 -0.3556 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 0.4400 -2.1636 1.2494 37 1 1.8933 -2.6776 0.3594 38 1 1.8936 -2.6776 2.1392 39 1 6.1187 -0.7744 4.6241 40 1 5.7652 0.9546 4.3509 41 1 6.5169 1.2076 6.5418 42 1 6.2010 -0.5127 6.9419 43 1 3.2477 2.4120 7.0277 44 1 4.5654 1.9615 11.3143 45 1 2.4871 0.2413 6.1379 46 1 3.4701 -1.1681 6.6368 47 1 3.6617 -1.3345 -0.8266 48 1 6.1456 -1.3948 1.0875 49 1 6.1150 -1.9603 -0.6675 50 1 5.4463 0.3717 -1.4079 51 1 5.4767 0.9379 0.3469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332356952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:26 Heat of formation + Delta-G solvation = -63.452996 kcal Electronic energy + Delta-G solvation = -32004.902873 eV Core-core repulsion = 27906.500564 eV Total energy + Delta-G solvation = -4098.402308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17732 -39.30232 -37.86495 -37.52617 -35.94521 -34.86259 -33.07732 -32.41304 -30.49992 -29.81233 -28.48415 -27.19717 -26.20814 -24.59126 -23.59015 -22.78442 -22.46599 -21.34906 -20.19881 -19.83621 -18.74670 -17.65013 -17.33938 -16.57615 -16.17482 -15.87210 -15.44667 -15.14888 -14.89471 -14.67392 -14.55727 -14.47241 -13.90675 -13.79087 -13.59397 -13.34904 -13.11492 -12.74695 -12.59872 -12.50041 -12.33476 -12.22530 -12.11663 -11.85633 -11.69733 -11.64480 -11.46297 -11.41848 -11.10921 -11.02329 -10.94247 -10.77046 -10.51385 -10.47510 -10.42773 -10.33107 -10.19812 -9.34507 -8.95423 -8.78930 -8.58193 -8.54098 -8.19108 -6.26053 -4.36979 1.56614 2.33282 3.29865 3.40694 3.44155 3.49103 3.64127 3.80556 4.30432 4.42975 4.44036 4.66172 4.76298 4.82175 4.87747 4.95773 4.98430 5.10480 5.19488 5.33557 5.36931 5.40109 5.42050 5.49570 5.60502 5.67838 5.69210 5.70773 5.73632 5.75614 5.81014 5.88490 5.93157 5.99560 6.07901 6.11412 6.16431 6.20162 6.25716 6.35552 6.47718 6.57728 6.64479 6.75699 7.01114 7.08734 7.36278 7.59809 7.82443 8.04940 8.20509 8.58215 8.75711 9.35151 10.82835 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.003356 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.378468 B = 8341.383566 C = 8856.086074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.122 3.878 5 H 0.132 0.868 6 C -0.154 4.154 7 N -0.552 5.552 8 C 0.510 3.490 9 O -0.510 6.510 10 C 0.510 3.490 11 O -0.529 6.529 12 N -0.573 5.573 13 C 0.108 3.892 14 C -0.126 4.126 15 C 0.220 3.780 16 O -0.560 6.560 17 C -0.556 4.556 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.884 5.884 21 Si 0.946 3.054 22 H -0.290 1.290 23 H -0.324 1.324 24 H -0.271 1.271 25 C 0.088 3.912 26 C 0.070 3.930 27 C -0.191 4.191 28 C -0.183 4.183 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.374 0.626 44 H 0.268 0.732 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -3.528 -22.782 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.207 4.207 4 C 0.020 3.980 5 H 0.149 0.851 6 C -0.212 4.212 7 N -0.284 5.284 8 C 0.293 3.707 9 O -0.386 6.386 10 C 0.293 3.707 11 O -0.408 6.408 12 N -0.305 5.305 13 C -0.014 4.014 14 C -0.164 4.164 15 C 0.179 3.821 16 O -0.368 6.368 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.130 4.130 20 N -0.518 5.518 21 Si 0.781 3.219 22 H -0.218 1.218 23 H -0.255 1.255 24 H -0.197 1.197 25 C -0.033 4.033 26 C -0.034 4.034 27 C -0.228 4.228 28 C -0.222 4.222 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.222 0.778 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.147 0.853 48 H 0.151 0.849 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.844 -3.580 -22.880 23.332 hybrid contribution -0.184 0.732 -0.062 0.757 sum -3.028 -2.848 -22.943 23.316 Atomic orbital electron populations 1.21858 0.94269 1.02143 1.02101 1.21453 0.96306 0.96723 0.97699 1.21871 1.01806 0.95409 1.01611 1.22024 0.77145 0.97765 1.01059 0.85112 1.22115 1.01470 0.95801 1.01804 1.47273 1.07210 1.68817 1.05053 1.20301 0.87357 0.77912 0.85097 1.90606 1.13920 1.47323 1.86735 1.19658 0.86894 0.79801 0.84374 1.90604 1.14590 1.50015 1.85624 1.48465 1.11600 1.63601 1.06800 1.22265 0.79739 1.00692 0.98729 1.23061 0.99174 1.02320 0.91857 1.20235 0.89982 0.77879 0.93969 1.86129 1.38208 1.28433 1.84001 1.21088 1.50230 1.00704 0.87256 0.89949 1.25100 0.93629 0.99673 0.94582 1.69968 1.44666 1.35131 1.02039 0.85770 0.79261 0.81442 0.75430 1.21806 1.25495 1.19673 1.23301 0.98586 1.01925 0.79511 1.21645 0.88973 1.04933 0.87818 1.23765 0.95917 0.97682 1.05452 1.23242 1.03207 0.94122 1.01617 0.92211 0.92546 0.92141 0.91159 0.92803 0.92708 0.92047 0.91245 0.93272 0.91938 0.91212 0.91288 0.89969 0.89569 0.77782 0.92266 0.90660 0.90323 0.85291 0.84880 0.89197 0.88721 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 2 C -0.10 -0.93 2.08 -90.62 -0.19 -1.11 16 3 C -0.15 -1.44 8.98 37.16 0.33 -1.11 16 4 C 0.12 1.39 1.54 -67.93 -0.10 1.29 16 5 H 0.13 1.84 5.07 -52.09 -0.26 1.57 16 6 C -0.15 -1.63 8.82 37.16 0.33 -1.30 16 7 N -0.55 -6.88 2.20 -159.08 -0.35 -7.23 16 8 C 0.51 7.84 7.47 -11.59 -0.09 7.76 16 9 O -0.51 -8.27 9.90 5.50 0.05 -8.21 16 10 C 0.51 8.82 7.72 -11.59 -0.09 8.74 16 11 O -0.53 -9.44 12.68 5.50 0.07 -9.37 16 12 N -0.57 -10.47 3.33 -171.00 -0.57 -11.04 16 13 C 0.11 1.92 5.49 -3.05 -0.02 1.90 16 14 C -0.13 -2.48 5.88 -24.89 -0.15 -2.63 16 15 C 0.22 4.74 0.70 -89.61 -0.06 4.68 16 16 O -0.56 -12.00 8.95 -35.23 -0.32 -12.32 16 17 C -0.56 -14.25 8.84 -34.44 -0.30 -14.55 16 18 H 0.08 2.29 8.00 -52.49 -0.42 1.87 16 19 C 0.08 2.04 5.45 -17.82 -0.10 1.95 16 20 N -0.88 -25.52 13.96 55.43 0.77 -24.75 16 21 Si 0.95 22.74 24.69 -169.99 -4.20 18.54 16 22 H -0.29 -6.83 7.05 56.52 0.40 -6.43 16 23 H -0.32 -8.01 7.11 56.52 0.40 -7.61 16 24 H -0.27 -6.42 5.59 56.52 0.32 -6.10 16 25 C 0.09 1.73 6.10 -2.51 -0.02 1.71 16 26 C 0.07 0.73 4.99 -67.93 -0.34 0.39 16 27 C -0.19 -2.08 9.62 -26.73 -0.26 -2.34 16 28 C -0.18 -1.90 8.77 -26.74 -0.23 -2.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.07 0.57 6.63 -51.93 -0.34 0.22 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.65 5.81 -51.93 -0.30 0.35 16 36 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.80 7.56 -51.93 -0.39 0.40 16 39 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 40 H 0.07 1.24 7.72 -51.93 -0.40 0.84 16 41 H 0.08 1.67 6.57 -51.93 -0.34 1.33 16 42 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 43 H 0.37 7.25 8.71 45.56 0.40 7.65 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 46 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16 47 H 0.13 1.06 6.90 -51.93 -0.36 0.71 16 48 H 0.13 1.82 5.29 -51.97 -0.27 1.54 16 49 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.10 1.24 7.54 -51.93 -0.39 0.85 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -29.12 382.35 -7.31 -36.43 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.59 Total: 9.78 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.95 Total: 2.41 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.15 Total: -43.01 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.19 Total: -29.90 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.20 Total: 18.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.12 -7.31 -36.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.026 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds