Wall clock time and date at job start Tue Mar 31 2020 20:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47104 * 2 1 4 4 C 1.52995 * 109.47164 * 119.99590 * 2 1 3 5 5 H 1.09000 * 109.47256 * 299.99848 * 4 2 1 6 6 C 1.53006 * 109.47234 * 59.99755 * 4 2 1 7 7 N 1.46506 * 109.47330 * 180.02562 * 4 2 1 8 8 C 1.34773 * 120.00172 * 141.45453 * 7 4 2 9 9 O 1.21346 * 119.99785 * 187.30741 * 8 7 4 10 10 C 1.49452 * 119.99938 * 7.58390 * 8 7 4 11 11 O 1.21346 * 120.00111 * 6.01269 * 10 8 7 12 12 N 1.34772 * 119.99899 * 186.01709 * 10 8 7 13 13 C 1.47022 * 125.64834 * 359.68935 * 12 10 8 14 14 C 1.54341 * 107.26754 * 178.84867 * 13 12 10 15 15 C 1.55155 * 103.01867 * 338.14230 * 14 13 12 16 16 O 1.42894 * 111.00708 * 277.23267 * 15 14 13 17 17 C 1.50700 * 111.03699 * 153.39167 * 15 14 13 18 18 H 1.08000 * 120.00290 * 273.45292 * 17 15 14 19 19 C 1.37873 * 119.99915 * 93.45415 * 17 15 14 20 20 N 1.31514 * 120.00094 * 170.34020 * 19 17 15 21 21 Si 1.86807 * 120.00118 * 350.34445 * 19 17 15 22 22 H 1.48496 * 109.47085 * 84.67105 * 21 19 17 23 23 H 1.48496 * 109.47207 * 204.67415 * 21 19 17 24 24 H 1.48503 * 109.46518 * 324.67226 * 21 19 17 25 25 C 1.47429 * 125.65010 * 180.02562 * 12 10 8 26 26 C 1.46496 * 119.99606 * 321.45513 * 7 4 2 27 27 C 1.53002 * 117.49793 * 196.60605 * 26 7 4 28 28 C 1.52994 * 117.49991 * 127.98534 * 26 7 4 29 29 H 1.09007 * 109.47315 * 300.00298 * 1 2 3 30 30 H 1.09002 * 109.47362 * 59.99607 * 1 2 3 31 31 H 1.09001 * 109.47515 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46910 * 239.99650 * 2 1 3 33 33 H 1.09007 * 109.47054 * 299.99727 * 3 2 1 34 34 H 1.08993 * 109.47348 * 59.99725 * 3 2 1 35 35 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.46868 * 300.00494 * 6 4 2 37 37 H 1.09007 * 109.46678 * 60.00235 * 6 4 2 38 38 H 1.08999 * 109.47087 * 179.97438 * 6 4 2 39 39 H 1.08997 * 109.88582 * 298.39250 * 13 12 10 40 40 H 1.09002 * 109.88222 * 59.56129 * 13 12 10 41 41 H 1.08998 * 110.85212 * 219.67793 * 14 13 12 42 42 H 1.08995 * 110.51396 * 96.45062 * 14 13 12 43 43 H 0.96704 * 114.00282 * 177.33003 * 16 15 14 44 44 H 0.97002 * 119.99995 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.36380 * 322.92610 * 25 12 10 46 46 H 1.08992 * 110.36928 * 85.13810 * 25 12 10 47 47 H 1.09007 * 115.55334 * 342.31289 * 26 7 4 48 48 H 1.09002 * 117.49980 * 0.02562 * 27 26 7 49 49 H 1.08999 * 117.49716 * 145.02039 * 27 26 7 50 50 H 1.08998 * 117.50027 * 214.97755 * 28 26 7 51 51 H 1.09001 * 117.50017 * 359.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1392 6 6 1.5299 -2.1637 1.2494 7 7 3.5050 -0.7206 1.2496 8 6 4.1786 -0.5470 2.4040 9 8 5.3846 -0.4138 2.3885 10 6 3.4408 -0.5248 3.7035 11 8 2.2530 -0.7713 3.7312 12 7 4.0948 -0.2310 4.8447 13 6 5.5276 0.0793 4.9556 14 6 5.8182 0.3770 6.4419 15 6 4.4231 0.7631 7.0003 16 8 4.1263 2.1352 6.7334 17 6 4.3310 0.4706 8.4757 18 1 4.0374 -0.5121 8.8142 19 6 4.6216 1.4575 9.3936 20 7 4.3613 1.2670 10.6686 21 14 5.3851 3.0652 8.8263 22 1 4.3143 3.9894 8.3743 23 1 6.1302 3.6838 9.9520 24 1 6.3178 2.8004 7.7014 25 6 3.4935 -0.1745 6.1896 26 6 4.2378 -0.9088 -0.0049 27 6 5.7174 -1.2861 0.0910 28 6 5.3140 0.1205 -0.3556 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 0.4400 -2.1636 1.2494 37 1 1.8933 -2.6776 0.3594 38 1 1.8936 -2.6776 2.1392 39 1 6.1187 -0.7744 4.6241 40 1 5.7652 0.9546 4.3509 41 1 6.5169 1.2076 6.5418 42 1 6.2010 -0.5127 6.9419 43 1 3.2477 2.4120 7.0277 44 1 4.5654 1.9615 11.3143 45 1 2.4871 0.2413 6.1379 46 1 3.4701 -1.1681 6.6368 47 1 3.6617 -1.3345 -0.8266 48 1 6.1456 -1.3948 1.0875 49 1 6.1150 -1.9603 -0.6675 50 1 5.4463 0.3717 -1.4079 51 1 5.4767 0.9379 0.3469 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332356952.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:26 Heat of formation + Delta-G solvation = -82.372234 kcal Electronic energy + Delta-G solvation = -32005.723273 eV Core-core repulsion = 27906.500564 eV Total energy + Delta-G solvation = -4099.222708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.34309 -40.67895 -39.23412 -38.67683 -36.82871 -36.45177 -34.47235 -34.00184 -32.10739 -30.69052 -30.11171 -28.04408 -27.71251 -25.98297 -24.47887 -24.17261 -23.28747 -22.54993 -21.62250 -21.03964 -19.99479 -19.45479 -18.50017 -17.82908 -17.36578 -17.23732 -17.09325 -16.52284 -16.42419 -16.00120 -15.43066 -15.36199 -15.32578 -15.00264 -14.64028 -14.58345 -14.45248 -14.21731 -14.09173 -13.92932 -13.38093 -13.32940 -13.24557 -13.08742 -12.95110 -12.81234 -12.69715 -12.41012 -12.36902 -12.28140 -12.24385 -12.00326 -11.92275 -11.82638 -11.53582 -11.37173 -11.27934 -11.23138 -10.66022 -10.48115 -10.18260 -9.76294 -9.47139 -8.37293 -6.49451 0.29510 1.15781 1.48141 1.52258 1.71288 2.02868 2.23115 2.41767 2.90803 2.95280 3.08986 3.43225 3.61789 3.79261 3.86657 3.98800 4.00345 4.05920 4.09464 4.20315 4.21827 4.35650 4.36946 4.51608 4.61223 4.62690 4.67073 4.75160 4.80644 4.84440 4.89352 4.93738 4.97258 5.01040 5.02801 5.06113 5.11261 5.16305 5.17446 5.29238 5.31727 5.34546 5.43885 5.46769 5.49569 5.65259 6.00787 6.01906 6.22849 6.54400 6.58424 6.88390 6.90763 7.26799 8.75582 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.003356 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.378468 B = 8341.383566 C = 8856.086074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.119 3.881 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.542 5.542 8 C 0.506 3.494 9 O -0.522 6.522 10 C 0.505 3.495 11 O -0.536 6.536 12 N -0.581 5.581 13 C 0.122 3.878 14 C -0.123 4.123 15 C 0.218 3.782 16 O -0.561 6.561 17 C -0.550 4.550 18 H 0.050 0.950 19 C 0.031 3.969 20 N -0.930 5.930 21 Si 1.001 2.999 22 H -0.280 1.280 23 H -0.334 1.334 24 H -0.263 1.263 25 C 0.098 3.902 26 C 0.068 3.932 27 C -0.196 4.196 28 C -0.176 4.176 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.382 0.618 44 H 0.269 0.731 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.162 0.838 48 H 0.104 0.896 49 H 0.115 0.885 50 H 0.123 0.877 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -3.488 -26.778 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.205 4.205 4 C 0.017 3.983 5 H 0.120 0.880 6 C -0.206 4.206 7 N -0.272 5.272 8 C 0.289 3.711 9 O -0.399 6.399 10 C 0.289 3.711 11 O -0.416 6.416 12 N -0.313 5.313 13 C 0.000 4.000 14 C -0.162 4.162 15 C 0.177 3.823 16 O -0.370 6.370 17 C -0.587 4.587 18 H 0.068 0.932 19 C -0.170 4.170 20 N -0.567 5.567 21 Si 0.834 3.166 22 H -0.206 1.206 23 H -0.266 1.266 24 H -0.189 1.189 25 C -0.024 4.024 26 C -0.034 4.034 27 C -0.233 4.233 28 C -0.215 4.215 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.232 0.768 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.179 0.821 48 H 0.122 0.878 49 H 0.133 0.867 50 H 0.141 0.859 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.053 -3.549 -26.926 27.330 hybrid contribution -0.208 0.645 1.143 1.329 sum -3.260 -2.904 -25.783 26.150 Atomic orbital electron populations 1.21857 0.93332 1.02798 1.02231 1.21423 0.96962 0.96020 0.96928 1.21858 1.01127 0.95947 1.01610 1.22036 0.76455 0.98433 1.01354 0.88022 1.22067 1.02237 0.94875 1.01449 1.47359 1.07791 1.67135 1.04950 1.19964 0.87141 0.78876 0.85157 1.90623 1.14107 1.48397 1.86823 1.20185 0.86955 0.79061 0.84931 1.90615 1.15069 1.49902 1.85982 1.48452 1.11704 1.64602 1.06559 1.22125 0.79622 1.01199 0.97042 1.22987 0.97669 1.02291 0.93209 1.20110 0.91815 0.78463 0.91879 1.86096 1.39013 1.28094 1.83784 1.21281 1.48657 0.99139 0.89667 0.93167 1.25776 0.94121 1.02618 0.94441 1.70073 1.46957 1.36401 1.03315 0.84871 0.78772 0.78286 0.74675 1.20633 1.26608 1.18889 1.22966 0.98070 1.00991 0.80349 1.22022 0.89045 1.05164 0.87206 1.23704 0.96203 0.98741 1.04700 1.23223 1.02735 0.93004 1.02498 0.93566 0.90977 0.91243 0.88974 0.91008 0.94531 0.93014 0.90025 0.91191 0.94623 0.89943 0.91319 0.90240 0.89342 0.76828 0.92238 0.90796 0.90972 0.82060 0.87796 0.86715 0.85927 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 2 C -0.09 -1.42 2.08 -10.80 -0.02 -1.44 16 3 C -0.15 -2.52 8.98 71.98 0.65 -1.88 16 4 C 0.12 2.51 1.54 44.99 0.07 2.58 16 5 H 0.10 2.81 5.07 -4.88 -0.02 2.79 16 6 C -0.15 -2.83 8.82 71.98 0.64 -2.19 16 7 N -0.54 -12.60 2.20 -775.59 -1.71 -14.31 16 8 C 0.51 15.24 7.47 87.27 0.65 15.89 16 9 O -0.52 -16.62 9.90 -3.23 -0.03 -16.65 16 10 C 0.50 17.42 7.72 87.27 0.67 18.09 16 11 O -0.54 -19.25 12.68 -3.23 -0.04 -19.29 16 12 N -0.58 -21.12 3.33 -813.28 -2.70 -23.83 16 13 C 0.12 4.25 5.49 86.73 0.48 4.73 16 14 C -0.12 -4.80 5.88 31.79 0.19 -4.61 16 15 C 0.22 9.40 0.70 -10.14 -0.01 9.40 16 16 O -0.56 -23.53 8.95 -148.98 -1.33 -24.87 16 17 C -0.55 -28.81 8.84 25.60 0.23 -28.59 16 18 H 0.05 2.91 8.00 -2.91 -0.02 2.89 16 19 C 0.03 1.71 5.45 84.65 0.46 2.17 16 20 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 21 Si 1.00 46.90 24.69 68.60 1.69 48.59 16 22 H -0.28 -12.49 7.05 99.48 0.70 -11.79 16 23 H -0.33 -16.16 7.11 99.48 0.71 -15.45 16 24 H -0.26 -11.93 5.59 99.48 0.56 -11.38 16 25 C 0.10 3.89 6.10 86.86 0.53 4.42 16 26 C 0.07 1.20 4.99 44.99 0.22 1.43 16 27 C -0.20 -3.79 9.62 30.59 0.29 -3.50 16 28 C -0.18 -3.17 8.77 30.59 0.27 -2.90 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 32 H 0.09 1.04 6.63 -2.39 -0.02 1.02 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.98 5.81 -2.39 -0.01 0.97 16 36 H 0.08 1.35 6.43 -2.39 -0.02 1.33 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.03 0.87 7.56 -2.39 -0.02 0.85 16 39 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 40 H 0.07 2.41 7.72 -2.39 -0.02 2.39 16 41 H 0.08 3.14 6.57 -2.39 -0.02 3.12 16 42 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 43 H 0.38 14.50 8.71 -74.05 -0.64 13.86 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.07 2.91 8.04 -2.38 -0.02 2.89 16 46 H 0.07 2.92 7.99 -2.39 -0.02 2.90 16 47 H 0.16 1.83 6.90 -2.38 -0.02 1.82 16 48 H 0.10 2.73 5.29 -3.12 -0.02 2.71 16 49 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.07 1.73 7.54 -2.39 -0.02 1.71 16 Total: -1.00 -64.19 382.35 2.25 -61.94 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.13 Total: 30.96 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.95 Total: 12.35 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -4.11 Total: -93.03 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.41 Total: -60.81 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.69 Total: 48.59 kcal Total: -64.19 2.25 -61.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356952.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.434 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds