Wall clock time and date at job start Tue Mar 31 2020 20:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47240 * 239.99301 * 2 1 3 5 5 H 1.09005 * 109.46692 * 55.42335 * 4 2 1 6 6 C 1.52993 * 109.47156 * 175.42191 * 4 2 1 7 7 N 1.46497 * 109.47171 * 295.42381 * 4 2 1 8 8 C 1.34778 * 119.99808 * 120.54756 * 7 4 2 9 9 O 1.21342 * 120.00334 * 5.50370 * 8 7 4 10 10 C 1.49451 * 119.99706 * 185.51040 * 8 7 4 11 11 O 1.21350 * 120.00312 * 5.28337 * 10 8 7 12 12 N 1.34783 * 120.00079 * 185.28494 * 10 8 7 13 13 C 1.47022 * 125.64666 * 0.02562 * 12 10 8 14 14 C 1.54319 * 107.27130 * 181.02164 * 13 12 10 15 15 C 1.55151 * 102.94442 * 22.19075 * 14 13 12 16 16 O 1.42905 * 111.00224 * 82.56913 * 15 14 13 17 17 C 1.50693 * 111.00736 * 206.38349 * 15 14 13 18 18 H 1.08003 * 119.99856 * 0.02562 * 17 15 14 19 19 C 1.37878 * 120.00358 * 179.97438 * 17 15 14 20 20 N 1.31521 * 119.99951 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00456 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47186 * 119.99991 * 21 19 17 24 24 H 1.48500 * 109.47122 * 240.00373 * 21 19 17 25 25 C 1.47423 * 125.64913 * 179.71075 * 12 10 8 26 26 C 1.46498 * 120.00305 * 300.53791 * 7 4 2 27 27 C 1.53010 * 117.49360 * 68.04688 * 26 7 4 28 28 C 1.52998 * 59.99914 * 252.51273 * 27 26 7 29 29 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47546 * 300.00506 * 1 2 3 31 31 H 1.09004 * 109.47242 * 60.00519 * 1 2 3 32 32 H 1.09003 * 109.46656 * 119.99966 * 2 1 3 33 33 H 1.08990 * 109.47560 * 59.99848 * 3 2 1 34 34 H 1.09005 * 109.46933 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46884 * 299.99375 * 3 2 1 36 36 H 1.08996 * 109.47610 * 186.62067 * 6 4 2 37 37 H 1.09002 * 109.47460 * 306.61635 * 6 4 2 38 38 H 1.09001 * 109.47112 * 66.61522 * 6 4 2 39 39 H 1.09008 * 109.88183 * 300.44099 * 13 12 10 40 40 H 1.09001 * 109.88314 * 61.59874 * 13 12 10 41 41 H 1.09004 * 110.72161 * 140.55698 * 14 13 12 42 42 H 1.09003 * 110.71835 * 263.64604 * 14 13 12 43 43 H 0.96701 * 113.99505 * 179.97438 * 16 15 14 44 44 H 0.96988 * 120.00229 * 179.97438 * 20 19 17 45 45 H 1.08991 * 110.37011 * 274.74971 * 25 12 10 46 46 H 1.09004 * 110.36683 * 37.07820 * 25 12 10 47 47 H 1.08994 * 115.55682 * 213.75534 * 26 7 4 48 48 H 1.08999 * 117.50027 * 0.02562 * 27 26 7 49 49 H 1.08994 * 117.49456 * 145.02132 * 27 26 7 50 50 H 1.09000 * 117.50098 * 252.51439 * 28 27 26 51 51 H 1.09000 * 117.50056 * 107.49396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 1 1.6112 -0.2571 -2.1373 6 6 3.5656 -0.6224 -1.3080 7 7 1.6438 -2.1307 -1.1952 8 6 0.8720 -2.6515 -2.1697 9 8 0.5881 -1.9826 -3.1415 10 6 0.3658 -4.0529 -2.0533 11 8 0.5684 -4.6890 -1.0400 12 7 -0.3157 -4.6102 -3.0739 13 6 -0.6300 -3.9563 -4.3526 14 6 -1.4414 -4.9632 -5.1948 15 6 -2.0241 -5.9223 -4.1235 16 8 -3.2078 -5.3770 -3.5373 17 6 -2.2927 -7.2853 -4.7075 18 1 -2.0763 -7.4792 -5.7477 19 6 -2.8138 -8.2850 -3.9138 20 7 -3.0768 -8.0490 -2.6469 21 14 -3.1460 -9.9747 -4.6375 22 1 -2.7664 -9.9817 -6.0731 23 1 -2.3452 -10.9914 -3.9093 24 1 -4.5902 -10.2945 -4.5054 25 6 -0.8638 -5.9786 -3.0953 26 6 2.0865 -2.9740 -0.0821 27 6 1.5153 -2.6707 1.3046 28 6 2.9717 -2.3275 0.9854 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.9201 -1.0321 -2.2538 37 1 3.8653 0.4226 -1.2298 38 1 3.9985 -1.1873 -0.4824 39 1 -1.2231 -3.0592 -4.1743 40 1 0.2920 -3.6962 -4.8725 41 1 -2.2413 -4.4573 -5.7356 42 1 -0.7913 -5.5008 -5.8850 43 1 -3.6082 -5.9415 -2.8620 44 1 -3.4437 -8.7521 -2.0886 45 1 -0.1016 -6.6875 -3.4184 46 1 -1.2432 -6.2508 -2.1104 47 1 2.2783 -4.0178 -0.3303 48 1 0.8098 -1.8440 1.3886 49 1 1.3311 -3.5151 1.9687 50 1 3.7457 -2.9462 1.4395 51 1 3.2248 -1.2748 0.8594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332356954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:29 Heat of formation + Delta-G solvation = -62.208013 kcal Electronic energy + Delta-G solvation = -31868.331255 eV Core-core repulsion = 27769.982933 eV Total energy + Delta-G solvation = -4098.348322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02016 -39.30421 -37.80504 -37.21977 -35.45943 -34.33939 -32.98125 -32.17257 -30.38096 -30.20984 -27.95617 -27.34309 -25.90070 -24.39712 -23.48845 -22.54636 -22.25202 -21.46557 -20.11958 -19.64624 -18.97226 -17.28168 -17.07135 -16.57234 -15.98133 -15.47664 -15.19442 -15.07538 -14.75306 -14.52436 -14.47570 -14.24766 -13.74611 -13.63137 -13.44375 -13.06508 -12.95835 -12.78357 -12.49261 -12.39452 -12.26193 -12.17834 -11.66932 -11.63072 -11.53572 -11.46228 -11.38626 -11.09308 -11.06507 -10.90632 -10.79352 -10.65289 -10.57288 -10.47426 -10.38837 -10.26434 -10.18120 -9.40734 -8.94254 -8.69323 -8.56353 -8.39974 -7.85269 -6.32205 -4.41455 1.80542 2.51442 3.17876 3.26991 3.30551 3.53431 3.67745 3.85960 4.23621 4.40742 4.60404 4.65925 4.73483 4.84430 4.93534 4.95664 5.01840 5.14957 5.22067 5.25392 5.43902 5.50492 5.51407 5.56930 5.65547 5.71169 5.75584 5.77100 5.80641 5.87548 5.89551 5.95297 6.03831 6.06803 6.07968 6.12271 6.26342 6.31372 6.46223 6.51588 6.73443 6.81027 6.85600 7.17387 7.22000 7.30599 7.71557 7.82957 7.97852 8.07859 8.49145 8.62784 9.28514 9.44601 10.75122 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.003002 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.465834 B = 9323.421788 C = 9750.786063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.147 4.147 4 C 0.139 3.861 5 H 0.102 0.898 6 C -0.180 4.180 7 N -0.558 5.558 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.508 3.492 11 O -0.529 6.529 12 N -0.574 5.574 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.250 3.750 16 O -0.582 6.582 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.091 3.909 26 C 0.087 3.913 27 C -0.191 4.191 28 C -0.211 4.211 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.149 0.851 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.891 14.378 6.311 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.204 4.204 4 C 0.036 3.964 5 H 0.120 0.880 6 C -0.238 4.238 7 N -0.290 5.290 8 C 0.298 3.702 9 O -0.392 6.392 10 C 0.290 3.710 11 O -0.408 6.408 12 N -0.306 5.306 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.209 3.791 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.030 4.030 26 C -0.017 4.017 27 C -0.229 4.229 28 C -0.248 4.248 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.166 0.834 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.921 14.830 6.079 19.975 hybrid contribution -0.334 -1.403 0.188 1.454 sum 11.587 13.427 6.267 18.810 Atomic orbital electron populations 1.21857 0.94663 1.02299 1.01779 1.22014 0.96867 0.96704 0.99209 1.21899 1.01083 0.95337 1.02122 1.21208 0.95268 0.80206 0.99726 0.87979 1.22573 0.94907 1.02808 1.03478 1.47265 1.49004 1.10105 1.22663 1.20451 0.78838 0.88391 0.82515 1.90708 1.56636 1.61974 1.29874 1.19532 0.80959 0.86765 0.83763 1.90673 1.57828 1.63457 1.28834 1.48631 1.50403 1.16689 1.14844 1.22130 0.99062 0.96380 0.83522 1.22715 0.98655 0.96862 0.97756 1.19634 0.81733 0.90626 0.87147 1.86092 1.42590 1.50853 1.59696 1.21546 1.43548 0.94932 0.97362 0.91292 1.25097 0.94016 0.99508 0.94679 1.69571 1.43797 1.34564 1.05554 0.86320 0.78073 0.82973 0.79375 1.19540 1.20763 1.20719 1.23525 0.96976 0.78711 1.03755 1.22071 1.01935 0.95589 0.82112 1.23579 0.95733 1.04052 0.99580 1.23907 0.94745 1.02780 1.03341 0.92337 0.92585 0.92522 0.88612 0.92399 0.92119 0.92478 0.92203 0.90942 0.90475 0.91056 0.92056 0.90550 0.90479 0.76218 0.91904 0.91519 0.89581 0.83417 0.87938 0.88090 0.88067 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.25 37.16 0.31 -1.34 16 2 C -0.13 -1.23 1.71 -90.62 -0.15 -1.38 16 3 C -0.15 -1.09 8.73 37.15 0.32 -0.77 16 4 C 0.14 1.57 2.13 -67.94 -0.14 1.43 16 5 H 0.10 1.33 6.92 -51.93 -0.36 0.97 16 6 C -0.18 -1.64 8.69 37.15 0.32 -1.31 16 7 N -0.56 -7.83 2.15 -159.09 -0.34 -8.17 16 8 C 0.51 9.04 7.69 -11.58 -0.09 8.95 16 9 O -0.52 -9.66 13.50 5.50 0.07 -9.59 16 10 C 0.51 10.26 7.79 -11.58 -0.09 10.17 16 11 O -0.53 -11.18 13.65 5.50 0.08 -11.11 16 12 N -0.57 -12.23 3.32 -170.88 -0.57 -12.79 16 13 C 0.11 2.20 5.50 -3.07 -0.02 2.18 16 14 C -0.12 -2.51 6.12 -24.90 -0.15 -2.66 16 15 C 0.25 6.05 0.89 -89.51 -0.08 5.97 16 16 O -0.58 -15.07 13.19 -35.23 -0.46 -15.53 16 17 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 18 H 0.07 1.74 7.77 -52.48 -0.41 1.33 16 19 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 20 N -0.90 -23.47 10.72 55.43 0.59 -22.88 16 21 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.09 2.16 5.64 -2.41 -0.01 2.14 16 26 C 0.09 1.14 4.74 -67.93 -0.32 0.81 16 27 C -0.19 -2.20 9.61 -26.73 -0.26 -2.45 16 28 C -0.21 -1.99 7.84 -26.73 -0.21 -2.20 16 29 H 0.06 0.78 6.84 -51.93 -0.36 0.43 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.88 3.28 -51.93 -0.17 0.71 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.38 6.20 -51.93 -0.32 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.52 5.98 -51.93 -0.31 0.21 16 38 H 0.08 0.65 4.58 -51.93 -0.24 0.41 16 39 H 0.07 1.44 7.47 -51.92 -0.39 1.05 16 40 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.08 1.47 8.02 -51.93 -0.42 1.06 16 43 H 0.39 10.26 6.93 45.56 0.32 10.57 16 44 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 45 H 0.07 1.58 8.04 -51.93 -0.42 1.17 16 46 H 0.09 2.25 7.64 -51.93 -0.40 1.86 16 47 H 0.15 2.22 6.16 -51.93 -0.32 1.90 16 48 H 0.10 1.17 4.69 -51.93 -0.24 0.93 16 49 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.12 0.96 3.59 -51.93 -0.19 0.77 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -28.02 381.62 -7.99 -36.01 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.14 Total: 16.07 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.95 Total: 7.19 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.32 Total: -43.85 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.32 Total: -36.23 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.02 -7.99 -36.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.195 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds