Wall clock time and date at job start Tue Mar 31 2020 20:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47240 * 239.99301 * 2 1 3 5 5 H 1.09005 * 109.46692 * 55.42335 * 4 2 1 6 6 C 1.52993 * 109.47156 * 175.42191 * 4 2 1 7 7 N 1.46497 * 109.47171 * 295.42381 * 4 2 1 8 8 C 1.34778 * 119.99808 * 120.54756 * 7 4 2 9 9 O 1.21342 * 120.00334 * 5.50370 * 8 7 4 10 10 C 1.49451 * 119.99706 * 185.51040 * 8 7 4 11 11 O 1.21350 * 120.00312 * 5.28337 * 10 8 7 12 12 N 1.34783 * 120.00079 * 185.28494 * 10 8 7 13 13 C 1.47022 * 125.64666 * 0.02562 * 12 10 8 14 14 C 1.54319 * 107.27130 * 181.02164 * 13 12 10 15 15 C 1.55151 * 102.94442 * 22.19075 * 14 13 12 16 16 O 1.42905 * 111.00224 * 82.56913 * 15 14 13 17 17 C 1.50693 * 111.00736 * 206.38349 * 15 14 13 18 18 H 1.08003 * 119.99856 * 0.02562 * 17 15 14 19 19 C 1.37878 * 120.00358 * 179.97438 * 17 15 14 20 20 N 1.31521 * 119.99951 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00456 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47186 * 119.99991 * 21 19 17 24 24 H 1.48500 * 109.47122 * 240.00373 * 21 19 17 25 25 C 1.47423 * 125.64913 * 179.71075 * 12 10 8 26 26 C 1.46498 * 120.00305 * 300.53791 * 7 4 2 27 27 C 1.53010 * 117.49360 * 68.04688 * 26 7 4 28 28 C 1.52998 * 59.99914 * 252.51273 * 27 26 7 29 29 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47546 * 300.00506 * 1 2 3 31 31 H 1.09004 * 109.47242 * 60.00519 * 1 2 3 32 32 H 1.09003 * 109.46656 * 119.99966 * 2 1 3 33 33 H 1.08990 * 109.47560 * 59.99848 * 3 2 1 34 34 H 1.09005 * 109.46933 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46884 * 299.99375 * 3 2 1 36 36 H 1.08996 * 109.47610 * 186.62067 * 6 4 2 37 37 H 1.09002 * 109.47460 * 306.61635 * 6 4 2 38 38 H 1.09001 * 109.47112 * 66.61522 * 6 4 2 39 39 H 1.09008 * 109.88183 * 300.44099 * 13 12 10 40 40 H 1.09001 * 109.88314 * 61.59874 * 13 12 10 41 41 H 1.09004 * 110.72161 * 140.55698 * 14 13 12 42 42 H 1.09003 * 110.71835 * 263.64604 * 14 13 12 43 43 H 0.96701 * 113.99505 * 179.97438 * 16 15 14 44 44 H 0.96988 * 120.00229 * 179.97438 * 20 19 17 45 45 H 1.08991 * 110.37011 * 274.74971 * 25 12 10 46 46 H 1.09004 * 110.36683 * 37.07820 * 25 12 10 47 47 H 1.08994 * 115.55682 * 213.75534 * 26 7 4 48 48 H 1.08999 * 117.50027 * 0.02562 * 27 26 7 49 49 H 1.08994 * 117.49456 * 145.02132 * 27 26 7 50 50 H 1.09000 * 117.50098 * 252.51439 * 28 27 26 51 51 H 1.09000 * 117.50056 * 107.49396 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 1 1.6112 -0.2571 -2.1373 6 6 3.5656 -0.6224 -1.3080 7 7 1.6438 -2.1307 -1.1952 8 6 0.8720 -2.6515 -2.1697 9 8 0.5881 -1.9826 -3.1415 10 6 0.3658 -4.0529 -2.0533 11 8 0.5684 -4.6890 -1.0400 12 7 -0.3157 -4.6102 -3.0739 13 6 -0.6300 -3.9563 -4.3526 14 6 -1.4414 -4.9632 -5.1948 15 6 -2.0241 -5.9223 -4.1235 16 8 -3.2078 -5.3770 -3.5373 17 6 -2.2927 -7.2853 -4.7075 18 1 -2.0763 -7.4792 -5.7477 19 6 -2.8138 -8.2850 -3.9138 20 7 -3.0768 -8.0490 -2.6469 21 14 -3.1460 -9.9747 -4.6375 22 1 -2.7664 -9.9817 -6.0731 23 1 -2.3452 -10.9914 -3.9093 24 1 -4.5902 -10.2945 -4.5054 25 6 -0.8638 -5.9786 -3.0953 26 6 2.0865 -2.9740 -0.0821 27 6 1.5153 -2.6707 1.3046 28 6 2.9717 -2.3275 0.9854 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 3.9201 -1.0321 -2.2538 37 1 3.8653 0.4226 -1.2298 38 1 3.9985 -1.1873 -0.4824 39 1 -1.2231 -3.0592 -4.1743 40 1 0.2920 -3.6962 -4.8725 41 1 -2.2413 -4.4573 -5.7356 42 1 -0.7913 -5.5008 -5.8850 43 1 -3.6082 -5.9415 -2.8620 44 1 -3.4437 -8.7521 -2.0886 45 1 -0.1016 -6.6875 -3.4184 46 1 -1.2432 -6.2508 -2.1104 47 1 2.2783 -4.0178 -0.3303 48 1 0.8098 -1.8440 1.3886 49 1 1.3311 -3.5151 1.9687 50 1 3.7457 -2.9462 1.4395 51 1 3.2248 -1.2748 0.8594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332356954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:28 Heat of formation + Delta-G solvation = -79.735146 kcal Electronic energy + Delta-G solvation = -31869.091288 eV Core-core repulsion = 27769.982933 eV Total energy + Delta-G solvation = -4099.108356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27150 -40.74917 -39.19411 -38.90262 -36.37396 -36.13634 -34.18204 -34.08688 -31.96552 -31.26530 -29.75921 -28.18901 -27.56311 -25.79458 -24.67423 -23.75338 -23.28954 -22.68435 -21.52447 -21.01169 -20.36104 -19.21087 -18.42806 -18.10456 -17.38527 -17.09539 -16.78061 -16.35766 -16.25540 -15.85458 -15.50697 -15.44726 -14.94601 -14.90477 -14.70939 -14.63790 -14.36643 -14.26563 -13.95092 -13.51734 -13.38351 -13.27525 -13.15115 -12.97976 -12.88167 -12.61145 -12.52805 -12.47724 -12.34168 -12.27757 -12.25581 -12.15099 -12.09315 -11.84784 -11.56748 -11.39924 -11.25916 -11.07245 -10.69070 -10.47908 -10.23127 -9.75642 -9.50744 -8.27674 -6.44472 0.31966 1.19056 1.41977 1.45282 1.56204 2.05880 2.26268 2.39026 2.88267 2.98018 3.07750 3.64067 3.75581 3.75987 3.88489 4.01593 4.03178 4.06050 4.11612 4.14037 4.28968 4.36287 4.39365 4.50648 4.63486 4.68814 4.70620 4.74030 4.79513 4.84006 4.88950 4.94229 4.95995 5.00142 5.03150 5.06850 5.14747 5.14974 5.16248 5.26158 5.31043 5.35328 5.40538 5.44340 5.51570 5.73692 5.97419 6.01675 6.31264 6.56184 6.65220 6.92288 7.27826 7.37097 8.78623 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.003002 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.465834 B = 9323.421788 C = 9750.786063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.131 3.869 5 H 0.084 0.916 6 C -0.174 4.174 7 N -0.542 5.542 8 C 0.513 3.487 9 O -0.535 6.535 10 C 0.499 3.501 11 O -0.544 6.544 12 N -0.584 5.584 13 C 0.121 3.879 14 C -0.115 4.115 15 C 0.234 3.766 16 O -0.591 6.591 17 C -0.554 4.554 18 H 0.072 0.928 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.106 3.894 26 C 0.052 3.948 27 C -0.196 4.196 28 C -0.169 4.169 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.378 0.622 44 H 0.272 0.728 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.124 0.876 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.122 0.878 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 15.954 6.791 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.200 4.200 4 C 0.030 3.970 5 H 0.102 0.898 6 C -0.231 4.231 7 N -0.273 5.273 8 C 0.296 3.704 9 O -0.412 6.412 10 C 0.283 3.717 11 O -0.424 6.424 12 N -0.316 5.316 13 C -0.001 4.001 14 C -0.153 4.153 15 C 0.193 3.807 16 O -0.400 6.400 17 C -0.592 4.592 18 H 0.090 0.910 19 C -0.174 4.174 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.016 4.016 26 C -0.052 4.052 27 C -0.234 4.234 28 C -0.206 4.206 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.229 0.771 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.141 0.859 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.141 0.859 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.983 16.442 6.579 22.564 hybrid contribution -0.953 -1.869 0.133 2.102 sum 13.030 14.573 6.712 20.669 Atomic orbital electron populations 1.21855 0.96138 1.00396 1.02153 1.21997 0.95542 0.98252 0.98276 1.21892 1.02271 0.93282 1.02604 1.21519 0.97118 0.78234 1.00125 0.89764 1.22559 0.92499 1.04723 1.03339 1.47335 1.47019 1.11289 1.21638 1.19923 0.79863 0.87061 0.83559 1.90691 1.57921 1.61818 1.30792 1.20193 0.80346 0.88024 0.83147 1.90659 1.58116 1.64291 1.29285 1.48675 1.51001 1.15993 1.15947 1.22107 0.99696 0.95557 0.82778 1.22723 0.99029 0.96379 0.97153 1.19885 0.81243 0.91421 0.88148 1.86084 1.43435 1.50959 1.59547 1.21817 1.43951 0.95808 0.97612 0.91027 1.25842 0.93801 1.02823 0.94966 1.69675 1.44089 1.35455 1.06500 0.85347 0.77700 0.78758 0.78862 1.18822 1.20651 1.20606 1.23099 0.96715 0.80094 1.01662 1.22043 1.05436 0.95121 0.82581 1.23604 0.97719 1.04113 0.97985 1.24021 0.93748 1.03832 0.98956 0.95327 0.90856 0.93527 0.87732 0.91211 0.90164 0.92815 0.93306 0.88207 0.89424 0.91674 0.90089 0.89825 0.88813 0.77085 0.91870 0.92248 0.92963 0.85875 0.87837 0.88470 0.85936 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.25 71.98 0.59 -2.56 16 2 C -0.12 -2.03 1.71 -10.80 -0.02 -2.05 16 3 C -0.14 -1.61 8.73 71.98 0.63 -0.98 16 4 C 0.13 2.78 2.13 44.99 0.10 2.88 16 5 H 0.08 2.14 6.92 -2.38 -0.02 2.12 16 6 C -0.17 -2.63 8.69 71.98 0.63 -2.00 16 7 N -0.54 -15.08 2.15 -775.60 -1.67 -16.74 16 8 C 0.51 18.45 7.69 87.27 0.67 19.12 16 9 O -0.53 -20.30 13.50 -3.22 -0.04 -20.34 16 10 C 0.50 20.97 7.79 87.27 0.68 21.65 16 11 O -0.54 -24.12 13.65 -3.25 -0.04 -24.16 16 12 N -0.58 -25.71 3.32 -812.91 -2.70 -28.41 16 13 C 0.12 4.78 5.50 86.73 0.48 5.26 16 14 C -0.12 -4.72 6.12 31.78 0.19 -4.53 16 15 C 0.23 11.59 0.89 -10.07 -0.01 11.58 16 16 O -0.59 -31.61 13.19 -148.98 -1.97 -33.57 16 17 C -0.55 -28.79 8.25 25.60 0.21 -28.58 16 18 H 0.07 3.60 7.77 -2.91 -0.02 3.58 16 19 C 0.03 1.36 5.29 84.65 0.45 1.81 16 20 N -0.92 -49.41 10.72 21.45 0.23 -49.18 16 21 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.11 5.25 5.64 86.93 0.49 5.74 16 26 C 0.05 1.33 4.74 45.00 0.21 1.54 16 27 C -0.20 -4.30 9.61 30.60 0.29 -4.00 16 28 C -0.17 -2.69 7.84 30.59 0.24 -2.45 16 29 H 0.03 0.77 6.84 -2.39 -0.02 0.75 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.57 3.28 -2.39 -0.01 1.56 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.61 6.20 -2.38 -0.01 0.60 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 1.00 5.98 -2.39 -0.01 0.98 16 38 H 0.09 1.13 4.58 -2.39 -0.01 1.12 16 39 H 0.06 2.66 7.47 -2.38 -0.02 2.64 16 40 H 0.08 2.88 7.81 -2.39 -0.02 2.86 16 41 H 0.08 3.28 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.50 8.02 -2.39 -0.02 3.48 16 43 H 0.38 21.03 6.93 -74.06 -0.51 20.52 16 44 H 0.27 13.94 8.31 -92.72 -0.77 13.17 16 45 H 0.06 2.94 8.04 -2.39 -0.02 2.92 16 46 H 0.05 2.89 7.64 -2.39 -0.02 2.88 16 47 H 0.12 3.81 6.16 -2.39 -0.01 3.79 16 48 H 0.10 2.26 4.69 -2.39 -0.01 2.24 16 49 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.14 1.65 3.59 -2.39 -0.01 1.64 16 Total: -1.00 -62.99 381.62 2.12 -60.87 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: 0.45 Total: 45.73 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 5.84 Total: 22.42 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -4.14 Total: -94.34 kcal Atomic # 8 Polarization: -76.03 SS G_CDS: -2.05 Total: -78.08 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -62.99 2.12 -60.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332356954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.864 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds