Wall clock time and date at job start Tue Mar 31 2020 21:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50703 * 120.00296 * 2 1 4 4 N 1.46500 * 109.46823 * 124.99797 * 3 2 1 5 5 C 1.34776 * 120.00147 * 273.17277 * 4 3 2 6 6 O 1.21350 * 119.99928 * 184.38470 * 5 4 3 7 7 C 1.49451 * 120.00126 * 4.39019 * 5 4 3 8 8 O 1.21343 * 119.99776 * 6.54191 * 7 5 4 9 9 N 1.34773 * 119.99666 * 186.54305 * 7 5 4 10 10 C 1.46921 * 120.63822 * 356.96610 * 9 7 5 11 11 C 1.53627 * 108.54612 * 126.36544 * 10 9 7 12 12 C 1.53035 * 109.23694 * 54.86075 * 11 10 9 13 13 C 1.53040 * 109.54095 * 298.51001 * 12 11 10 14 14 H 1.09003 * 109.49387 * 301.41772 * 13 12 11 15 15 C 1.50699 * 109.52581 * 181.33887 * 13 12 11 16 16 H 1.07993 * 120.00170 * 0.14199 * 15 13 12 17 17 C 1.37885 * 120.00057 * 180.14495 * 15 13 12 18 18 N 1.31515 * 119.99442 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99860 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46922 * 90.00231 * 19 17 15 21 21 H 1.48508 * 109.47045 * 209.99990 * 19 17 15 22 22 H 1.48494 * 109.47593 * 330.00159 * 19 17 15 23 23 C 1.46933 * 120.62521 * 177.24304 * 9 7 5 24 24 C 1.46498 * 119.99970 * 93.18206 * 4 3 2 25 25 H 1.08994 * 109.47638 * 179.97438 * 24 4 3 26 26 C 1.53006 * 109.47468 * 59.99227 * 24 4 3 27 27 C 1.52999 * 109.47038 * 299.99598 * 24 4 3 28 28 O 1.42899 * 109.47013 * 64.99609 * 27 24 4 29 29 C 1.42901 * 113.99884 * 180.02562 * 28 27 24 30 30 H 1.07999 * 120.00175 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99989 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99989 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46780 * 5.00157 * 3 2 1 34 34 H 1.08994 * 109.47363 * 245.00275 * 3 2 1 35 35 H 1.09004 * 109.59002 * 246.20411 * 10 9 7 36 36 H 1.09005 * 109.58245 * 6.62586 * 10 9 7 37 37 H 1.08996 * 109.63568 * 294.86868 * 11 10 9 38 38 H 1.09003 * 109.42886 * 174.72943 * 11 10 9 39 39 H 1.09004 * 109.45896 * 178.49119 * 12 11 10 40 40 H 1.08999 * 109.45360 * 58.52331 * 12 11 10 41 41 H 0.97001 * 119.99099 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58803 * 353.37544 * 23 9 7 43 43 H 1.09007 * 109.58231 * 113.79892 * 23 9 7 44 44 H 1.08994 * 109.47011 * 300.00775 * 26 24 4 45 45 H 1.08997 * 109.46577 * 60.00430 * 26 24 4 46 46 H 1.08997 * 109.46853 * 180.02562 * 26 24 4 47 47 H 1.09002 * 109.47832 * 185.00055 * 27 24 4 48 48 H 1.09006 * 109.47239 * 305.00010 * 27 24 4 49 49 H 1.09006 * 109.47471 * 180.02562 * 29 28 27 50 50 H 1.09003 * 109.47092 * 300.00077 * 29 28 27 51 51 H 1.08997 * 109.47386 * 60.00673 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5751 1.7625 2.3380 6 8 3.3642 1.8601 3.2547 7 6 1.1390 2.1198 2.5470 8 8 0.3279 1.9108 1.6690 9 7 0.7451 2.6742 3.7105 10 6 1.7022 2.8726 4.8074 11 6 1.6537 4.3465 5.2377 12 6 0.2119 4.7227 5.5866 13 6 -0.6748 4.5526 4.3509 14 1 -0.2991 5.1821 3.5442 15 6 -2.0881 4.9545 4.6859 16 1 -2.3301 5.2993 5.6802 17 6 -3.0722 4.8818 3.7229 18 7 -2.7774 4.4612 2.5121 19 14 -4.8241 5.3792 4.1384 20 1 -5.0066 6.8266 3.8612 21 1 -5.7720 4.5929 3.3085 22 1 -5.0865 5.1135 5.5756 23 6 -0.6513 3.0863 3.9084 24 6 4.3790 0.8905 0.9514 25 1 4.9151 0.9818 1.8960 26 6 5.0586 1.7621 -0.1066 27 6 4.3938 -0.5699 0.4952 28 8 3.7936 -0.6711 -0.7977 29 6 3.7562 -2.0012 -1.3186 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 1.4316 2.2343 5.6485 36 1 2.7067 2.6232 4.4652 37 1 2.0074 4.9779 4.4227 38 1 2.2889 4.4901 6.1118 39 1 0.1775 5.7605 5.9182 40 1 -0.1495 4.0743 6.3848 41 1 -3.4699 4.4098 1.8347 42 1 -1.2003 2.9780 2.9730 43 1 -1.1101 2.4650 4.6777 44 1 4.5225 1.6712 -1.0512 45 1 5.0481 2.8024 0.2185 46 1 6.0891 1.4334 -0.2408 47 1 5.4231 -0.9251 0.4468 48 1 3.8326 -1.1779 1.2048 49 1 3.2866 -1.9932 -2.3023 50 1 4.7723 -2.3864 -1.4046 51 1 3.1816 -2.6386 -0.6466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333469481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:44 Heat of formation + Delta-G solvation = -59.627072 kcal Electronic energy + Delta-G solvation = -31975.631644 eV Core-core repulsion = 27877.395240 eV Total energy + Delta-G solvation = -4098.236404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77377 -38.91225 -37.86828 -37.05304 -35.88540 -33.59104 -33.20385 -31.66464 -31.16163 -29.68068 -27.58376 -26.45367 -26.07117 -25.40207 -24.87924 -23.15124 -21.74928 -20.71288 -19.83486 -19.27707 -18.60263 -17.33685 -16.76045 -16.35739 -16.12957 -15.82072 -15.69482 -15.43007 -15.35537 -14.60523 -14.47303 -14.04238 -13.79057 -13.59267 -13.32146 -13.25555 -12.93565 -12.89661 -12.65352 -12.55037 -12.38126 -12.11250 -12.00119 -11.73981 -11.59658 -11.38880 -11.27276 -11.15758 -10.96945 -10.70170 -10.60493 -10.41338 -10.21446 -9.96086 -9.87451 -9.65896 -9.12282 -9.08305 -8.92001 -8.71320 -8.43449 -8.28969 -7.71151 -6.00471 -4.08150 1.88086 2.46403 2.99443 3.31033 3.38202 3.40868 3.54836 3.74078 3.95836 4.42877 4.58607 4.75776 4.82440 4.99580 5.10888 5.13437 5.20112 5.28491 5.30215 5.36058 5.43948 5.50306 5.64834 5.70099 5.73020 5.79427 5.79756 5.96028 6.07209 6.25258 6.28564 6.35551 6.39904 6.44320 6.64147 6.68948 6.78275 6.87747 6.91464 7.02572 7.08815 7.11862 7.20257 7.29214 7.44083 7.62713 7.85890 7.98711 8.03285 8.24911 8.39233 8.71540 8.95673 9.57080 11.04921 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.003464 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.497559 B = 8081.636271 C = 9320.502017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.175 4.175 3 C 0.142 3.858 4 N -0.573 5.573 5 C 0.512 3.488 6 O -0.524 6.524 7 C 0.492 3.508 8 O -0.508 6.508 9 N -0.568 5.568 10 C 0.047 3.953 11 C -0.129 4.129 12 C -0.113 4.113 13 C 0.042 3.958 14 H 0.028 0.972 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.110 3.890 24 C 0.135 3.865 25 H 0.114 0.886 26 C -0.157 4.157 27 C 0.052 3.948 28 O -0.375 6.375 29 C 0.031 3.969 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.147 0.853 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.124 0.876 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.038 0.962 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.719 -11.037 -6.250 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C 0.021 3.979 4 N -0.305 5.305 5 C 0.297 3.703 6 O -0.403 6.403 7 C 0.273 3.727 8 O -0.385 6.385 9 N -0.300 5.300 10 C -0.074 4.074 11 C -0.167 4.167 12 C -0.151 4.151 13 C 0.023 3.977 14 H 0.047 0.953 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.009 4.009 24 C 0.032 3.968 25 H 0.131 0.869 26 C -0.215 4.215 27 C -0.025 4.025 28 O -0.294 6.294 29 C -0.066 4.066 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.063 0.937 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.056 0.944 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.528 -10.962 -6.518 20.094 hybrid contribution -0.975 -0.159 0.470 1.093 sum 14.553 -11.120 -6.048 19.289 Atomic orbital electron populations 1.24006 0.96135 1.01779 0.97008 1.22998 0.95613 0.97865 1.02956 1.21018 0.91331 0.97977 0.87594 1.47975 1.10910 1.61762 1.09865 1.20919 0.89932 0.77022 0.82414 1.90226 1.56504 1.53483 1.40133 1.19705 0.87927 0.80969 0.84073 1.90714 1.53771 1.52828 1.41229 1.48435 1.12753 1.56354 1.12451 1.23252 0.97917 0.96492 0.89784 1.21970 0.98440 0.96149 1.00190 1.21663 0.93583 0.99900 0.99943 1.18953 0.94449 0.91764 0.92576 0.95344 1.21097 0.92863 1.44351 0.97428 0.92361 1.25042 0.98992 0.94951 0.95004 1.69875 1.33421 1.45953 1.02648 0.86588 0.84538 0.78500 0.78346 1.20706 1.21181 1.19940 1.22430 0.77084 0.96987 1.04434 1.21266 0.82880 0.91981 1.00709 0.86865 1.22042 1.00265 0.99724 0.99479 1.22896 0.97257 0.96887 0.85473 1.88001 1.81090 1.27388 1.32910 1.22710 1.00167 0.84306 0.99394 0.90022 0.86800 0.88083 0.87641 0.89970 0.92737 0.83711 0.92525 0.92417 0.93216 0.93312 0.92708 0.85796 0.93695 0.91014 0.92074 0.91559 0.92251 0.92880 0.89580 0.94356 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 12.81 29.02 0.37 -1.96 16 2 C -0.18 -2.49 8.25 -36.02 -0.30 -2.78 16 3 C 0.14 2.02 4.55 -5.19 -0.02 2.00 16 4 N -0.57 -8.11 2.38 -167.98 -0.40 -8.51 16 5 C 0.51 8.75 7.63 -11.58 -0.09 8.66 16 6 O -0.52 -9.10 12.35 5.50 0.07 -9.03 16 7 C 0.49 9.88 7.58 -11.59 -0.09 9.79 16 8 O -0.51 -10.83 9.23 5.50 0.05 -10.78 16 9 N -0.57 -11.92 2.97 -173.01 -0.51 -12.44 16 10 C 0.05 0.87 6.28 -3.49 -0.02 0.84 16 11 C -0.13 -2.34 6.10 -26.39 -0.16 -2.50 16 12 C -0.11 -2.37 5.11 -26.69 -0.14 -2.50 16 13 C 0.04 1.04 2.25 -91.66 -0.21 0.83 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -14.08 8.57 -34.44 -0.29 -14.37 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.88 -25.09 11.39 55.43 0.63 -24.46 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.11 2.68 5.39 -3.71 -0.02 2.66 16 24 C 0.13 1.48 3.16 -67.93 -0.21 1.27 16 25 H 0.11 1.28 6.91 -51.93 -0.36 0.92 16 26 C -0.16 -1.49 8.98 37.16 0.33 -1.15 16 27 C 0.05 0.49 5.10 37.16 0.19 0.68 16 28 O -0.38 -3.63 5.78 -35.23 -0.20 -3.84 16 29 C 0.03 0.22 10.37 101.05 1.05 1.27 16 30 H 0.08 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.11 2.04 6.46 -52.49 -0.34 1.70 16 32 H 0.10 1.32 5.16 -52.49 -0.27 1.05 16 33 H 0.11 1.79 5.51 -51.93 -0.29 1.50 16 34 H 0.08 1.04 5.68 -51.93 -0.30 0.75 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.15 2.60 3.74 -57.10 -0.21 2.39 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.12 3.39 5.13 -51.93 -0.27 3.13 16 43 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.71 6.08 -51.93 -0.32 0.39 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 51 H 0.04 0.28 7.93 -51.93 -0.41 -0.13 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -29.24 384.84 -7.50 -36.74 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.21 Total: 6.01 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.30 Total: 4.36 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.28 Total: -45.41 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.08 Total: -23.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.24 -7.50 -36.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333469481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.882 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds