Wall clock time and date at job start Tue Mar 31 2020 21:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50703 * 120.00296 * 2 1 4 4 N 1.46500 * 109.46823 * 124.99797 * 3 2 1 5 5 C 1.34776 * 120.00147 * 273.17277 * 4 3 2 6 6 O 1.21350 * 119.99928 * 184.38470 * 5 4 3 7 7 C 1.49451 * 120.00126 * 4.39019 * 5 4 3 8 8 O 1.21343 * 119.99776 * 6.54191 * 7 5 4 9 9 N 1.34773 * 119.99666 * 186.54305 * 7 5 4 10 10 C 1.46921 * 120.63822 * 356.96610 * 9 7 5 11 11 C 1.53627 * 108.54612 * 126.36544 * 10 9 7 12 12 C 1.53035 * 109.23694 * 54.86075 * 11 10 9 13 13 C 1.53040 * 109.54095 * 298.51001 * 12 11 10 14 14 H 1.09003 * 109.49387 * 301.41772 * 13 12 11 15 15 C 1.50699 * 109.52581 * 181.33887 * 13 12 11 16 16 H 1.07993 * 120.00170 * 0.14199 * 15 13 12 17 17 C 1.37885 * 120.00057 * 180.14495 * 15 13 12 18 18 N 1.31515 * 119.99442 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99860 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46922 * 90.00231 * 19 17 15 21 21 H 1.48508 * 109.47045 * 209.99990 * 19 17 15 22 22 H 1.48494 * 109.47593 * 330.00159 * 19 17 15 23 23 C 1.46933 * 120.62521 * 177.24304 * 9 7 5 24 24 C 1.46498 * 119.99970 * 93.18206 * 4 3 2 25 25 H 1.08994 * 109.47638 * 179.97438 * 24 4 3 26 26 C 1.53006 * 109.47468 * 59.99227 * 24 4 3 27 27 C 1.52999 * 109.47038 * 299.99598 * 24 4 3 28 28 O 1.42899 * 109.47013 * 64.99609 * 27 24 4 29 29 C 1.42901 * 113.99884 * 180.02562 * 28 27 24 30 30 H 1.07999 * 120.00175 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99989 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99989 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46780 * 5.00157 * 3 2 1 34 34 H 1.08994 * 109.47363 * 245.00275 * 3 2 1 35 35 H 1.09004 * 109.59002 * 246.20411 * 10 9 7 36 36 H 1.09005 * 109.58245 * 6.62586 * 10 9 7 37 37 H 1.08996 * 109.63568 * 294.86868 * 11 10 9 38 38 H 1.09003 * 109.42886 * 174.72943 * 11 10 9 39 39 H 1.09004 * 109.45896 * 178.49119 * 12 11 10 40 40 H 1.08999 * 109.45360 * 58.52331 * 12 11 10 41 41 H 0.97001 * 119.99099 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58803 * 353.37544 * 23 9 7 43 43 H 1.09007 * 109.58231 * 113.79892 * 23 9 7 44 44 H 1.08994 * 109.47011 * 300.00775 * 26 24 4 45 45 H 1.08997 * 109.46577 * 60.00430 * 26 24 4 46 46 H 1.08997 * 109.46853 * 180.02562 * 26 24 4 47 47 H 1.09002 * 109.47832 * 185.00055 * 27 24 4 48 48 H 1.09006 * 109.47239 * 305.00010 * 27 24 4 49 49 H 1.09006 * 109.47471 * 180.02562 * 29 28 27 50 50 H 1.09003 * 109.47092 * 300.00077 * 29 28 27 51 51 H 1.08997 * 109.47386 * 60.00673 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5751 1.7625 2.3380 6 8 3.3642 1.8601 3.2547 7 6 1.1390 2.1198 2.5470 8 8 0.3279 1.9108 1.6690 9 7 0.7451 2.6742 3.7105 10 6 1.7022 2.8726 4.8074 11 6 1.6537 4.3465 5.2377 12 6 0.2119 4.7227 5.5866 13 6 -0.6748 4.5526 4.3509 14 1 -0.2991 5.1821 3.5442 15 6 -2.0881 4.9545 4.6859 16 1 -2.3301 5.2993 5.6802 17 6 -3.0722 4.8818 3.7229 18 7 -2.7774 4.4612 2.5121 19 14 -4.8241 5.3792 4.1384 20 1 -5.0066 6.8266 3.8612 21 1 -5.7720 4.5929 3.3085 22 1 -5.0865 5.1135 5.5756 23 6 -0.6513 3.0863 3.9084 24 6 4.3790 0.8905 0.9514 25 1 4.9151 0.9818 1.8960 26 6 5.0586 1.7621 -0.1066 27 6 4.3938 -0.5699 0.4952 28 8 3.7936 -0.6711 -0.7977 29 6 3.7562 -2.0012 -1.3186 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3585 2.1316 0.0896 34 1 2.6212 1.4026 -0.9313 35 1 1.4316 2.2343 5.6485 36 1 2.7067 2.6232 4.4652 37 1 2.0074 4.9779 4.4227 38 1 2.2889 4.4901 6.1118 39 1 0.1775 5.7605 5.9182 40 1 -0.1495 4.0743 6.3848 41 1 -3.4699 4.4098 1.8347 42 1 -1.2003 2.9780 2.9730 43 1 -1.1101 2.4650 4.6777 44 1 4.5225 1.6712 -1.0512 45 1 5.0481 2.8024 0.2185 46 1 6.0891 1.4334 -0.2408 47 1 5.4231 -0.9251 0.4468 48 1 3.8326 -1.1779 1.2048 49 1 3.2866 -1.9932 -2.3023 50 1 4.7723 -2.3864 -1.4046 51 1 3.1816 -2.6386 -0.6466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333469481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:43 Heat of formation + Delta-G solvation = -76.322956 kcal Electronic energy + Delta-G solvation = -31976.355632 eV Core-core repulsion = 27877.395240 eV Total energy + Delta-G solvation = -4098.960392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15301 -40.17864 -39.02647 -38.56551 -37.10155 -35.14632 -34.67883 -33.39552 -32.23758 -31.52319 -28.23319 -27.74540 -27.45278 -26.80003 -26.25176 -24.58240 -23.47242 -22.01398 -21.15077 -20.56398 -20.16792 -18.62384 -18.44668 -17.76312 -17.31462 -17.05251 -17.00635 -16.52145 -16.44771 -16.34228 -15.65335 -15.51316 -15.37311 -14.94984 -14.70099 -14.55847 -14.39566 -14.17884 -14.07309 -13.88640 -13.50879 -13.47182 -13.20591 -12.90073 -12.85454 -12.80667 -12.67717 -12.43476 -12.26988 -12.24464 -12.08035 -11.97579 -11.75420 -11.70165 -11.32365 -11.03887 -10.94039 -10.54315 -10.52076 -10.14756 -9.91657 -9.79297 -9.39432 -8.10664 -6.26801 0.42790 1.20029 1.41538 1.42505 1.52941 1.68219 2.22783 2.41686 2.54693 2.89582 3.16524 3.25613 3.82357 3.98547 4.12579 4.18891 4.20355 4.27337 4.33028 4.39247 4.45588 4.51273 4.54294 4.60882 4.63484 4.71341 4.75984 4.82665 4.84535 4.91053 4.95387 5.02939 5.05632 5.09325 5.12145 5.22167 5.25441 5.32707 5.36399 5.45623 5.56591 5.61926 5.86297 5.88071 5.89594 5.96866 6.19840 6.27260 6.31073 6.49060 6.75489 6.84440 7.12526 7.42498 8.92948 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.003464 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.497559 B = 8081.636271 C = 9320.502017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C 0.146 3.854 4 N -0.561 5.561 5 C 0.516 3.484 6 O -0.526 6.526 7 C 0.478 3.522 8 O -0.526 6.526 9 N -0.578 5.578 10 C 0.048 3.952 11 C -0.121 4.121 12 C -0.107 4.107 13 C 0.041 3.959 14 H -0.011 1.011 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.014 3.986 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.126 3.874 24 C 0.128 3.872 25 H 0.115 0.885 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.392 6.392 29 C 0.027 3.973 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.158 0.842 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.044 0.956 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.868 -12.201 -5.858 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.024 3.976 4 N -0.292 5.292 5 C 0.300 3.700 6 O -0.406 6.406 7 C 0.261 3.739 8 O -0.405 6.405 9 N -0.310 5.310 10 C -0.072 4.072 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.022 3.978 14 H 0.007 0.993 15 C -0.576 4.576 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.549 5.549 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.190 1.190 23 C 0.005 3.995 24 C 0.027 3.973 25 H 0.133 0.867 26 C -0.208 4.208 27 C -0.021 4.021 28 O -0.311 6.311 29 C -0.069 4.069 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.174 0.826 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.718 -12.138 -6.134 22.336 hybrid contribution -1.589 0.179 0.258 1.620 sum 16.129 -11.958 -5.876 20.921 Atomic orbital electron populations 1.23913 0.96738 1.01038 0.98881 1.23103 0.95107 0.98405 1.01163 1.20908 0.91211 0.96991 0.88448 1.48019 1.12349 1.60355 1.08477 1.20210 0.88215 0.77999 0.83599 1.90195 1.55826 1.54212 1.40390 1.20407 0.89630 0.80398 0.83459 1.90738 1.54893 1.53186 1.41636 1.48440 1.11893 1.56891 1.13793 1.23450 0.97650 0.96843 0.89306 1.21929 0.96940 0.95683 1.01393 1.21560 0.94689 1.00311 0.97921 1.18875 0.94419 0.91319 0.93182 0.99307 1.21468 0.94195 1.44388 0.97515 0.92212 1.25839 1.03025 0.94913 0.94828 1.70047 1.34441 1.46859 1.03542 0.85569 0.79615 0.78141 0.78415 1.20176 1.21086 1.18955 1.21859 0.79022 0.96528 1.02113 1.21613 0.80487 0.93652 1.01560 0.86737 1.22004 1.01575 0.98804 0.98441 1.22856 0.98887 0.95113 0.85229 1.87960 1.81393 1.28899 1.32895 1.22841 1.01367 0.83181 0.99507 0.88462 0.90026 0.86074 0.90823 0.87813 0.91632 0.82638 0.93501 0.88607 0.92945 0.92729 0.92981 0.89372 0.94532 0.91357 0.93145 0.88846 0.89226 0.93723 0.88993 0.92648 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 12.81 67.79 0.87 -4.46 16 2 C -0.16 -4.45 8.25 25.66 0.21 -4.24 16 3 C 0.15 4.14 4.55 85.63 0.39 4.53 16 4 N -0.56 -15.37 2.38 -803.72 -1.91 -17.28 16 5 C 0.52 17.45 7.63 87.27 0.67 18.11 16 6 O -0.53 -17.53 12.35 -3.25 -0.04 -17.57 16 7 C 0.48 19.84 7.58 87.27 0.66 20.50 16 8 O -0.53 -23.76 9.23 -3.22 -0.03 -23.79 16 9 N -0.58 -24.88 2.97 -819.63 -2.43 -27.32 16 10 C 0.05 1.71 6.28 86.51 0.54 2.26 16 11 C -0.12 -4.24 6.10 30.82 0.19 -4.05 16 12 C -0.11 -4.46 5.11 30.62 0.16 -4.30 16 13 C 0.04 2.13 2.25 -11.46 -0.03 2.11 16 14 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 15 C -0.54 -29.91 8.57 25.60 0.22 -29.69 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 17 C 0.01 0.77 5.30 84.66 0.45 1.22 16 18 N -0.91 -54.18 11.39 21.45 0.24 -53.93 16 19 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.13 6.41 5.39 86.36 0.47 6.88 16 24 C 0.13 2.52 3.16 44.99 0.14 2.66 16 25 H 0.11 2.28 6.91 -2.39 -0.02 2.27 16 26 C -0.15 -2.45 8.98 71.98 0.65 -1.81 16 27 C 0.06 0.88 5.10 71.98 0.37 1.24 16 28 O -0.39 -6.47 5.78 -148.98 -0.86 -7.33 16 29 C 0.03 0.32 10.37 113.37 1.18 1.49 16 30 H 0.10 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.08 3.16 6.46 -2.91 -0.02 3.14 16 32 H 0.12 2.94 5.16 -2.91 -0.02 2.92 16 33 H 0.07 2.63 5.51 -2.39 -0.01 2.61 16 34 H 0.10 2.52 5.68 -2.39 -0.01 2.51 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.16 5.34 3.74 -84.32 -0.32 5.03 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.09 5.14 5.13 -2.39 -0.01 5.13 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.07 1.18 6.08 -2.39 -0.01 1.16 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 48 H 0.04 0.79 8.05 -2.38 -0.02 0.77 16 49 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.04 0.46 7.93 -2.39 -0.02 0.44 16 Total: -1.00 -66.21 384.84 4.74 -61.48 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.61 Total: 27.08 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 7.12 Total: 12.45 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.10 Total: -98.53 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.93 Total: -48.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -66.21 4.74 -61.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333469481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.845 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds