Wall clock time and date at job start Tue Mar 31 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46621 * 2 1 4 4 C 1.52997 * 109.46869 * 119.99686 * 2 1 3 5 5 O 1.42906 * 109.47136 * 55.00293 * 4 2 1 6 6 C 1.42898 * 113.99822 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47070 * 180.02562 * 6 5 4 8 8 C 1.52999 * 117.50233 * 243.74737 * 7 6 5 9 9 C 1.53003 * 117.50227 * 175.08408 * 7 6 5 10 10 N 1.46497 * 109.47173 * 240.00042 * 2 1 3 11 11 C 1.34772 * 120.00067 * 84.99890 * 10 2 1 12 12 O 1.21346 * 120.00219 * 359.97438 * 11 10 2 13 13 C 1.49454 * 120.00049 * 179.97438 * 11 10 2 14 14 O 1.21354 * 119.99831 * 354.01745 * 13 11 10 15 15 N 1.34774 * 120.00149 * 174.01030 * 13 11 10 16 16 C 1.46925 * 120.62999 * 172.43284 * 15 13 11 17 17 C 1.53199 * 108.89314 * 233.67460 * 16 15 13 18 18 C 1.53039 * 109.31077 * 305.29477 * 17 16 15 19 19 C 1.50699 * 109.46070 * 181.36688 * 18 17 16 20 20 H 1.08007 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00383 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99967 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47031 * 60.00482 * 23 21 19 25 25 H 1.48505 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47484 * 300.00174 * 23 21 19 27 27 C 1.53050 * 109.53930 * 61.36452 * 18 17 16 28 28 C 1.47205 * 120.81367 * 352.56785 * 15 13 11 29 29 H 1.08991 * 109.47566 * 299.99891 * 1 2 3 30 30 H 1.08999 * 109.47210 * 60.00623 * 1 2 3 31 31 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46944 * 175.00136 * 4 2 1 33 33 H 1.08999 * 109.47278 * 294.99906 * 4 2 1 34 34 H 1.09000 * 109.47338 * 299.99890 * 6 5 4 35 35 H 1.09000 * 109.47231 * 59.99915 * 6 5 4 36 36 H 1.09009 * 115.54815 * 29.41718 * 7 6 5 37 37 H 1.09001 * 117.49475 * 0.02562 * 8 7 6 38 38 H 1.08996 * 117.50039 * 145.01719 * 8 7 6 39 39 H 1.08998 * 117.49997 * 214.97822 * 9 7 6 40 40 H 1.08996 * 117.49402 * 0.02562 * 9 7 6 41 41 H 0.97000 * 119.99774 * 265.00096 * 10 2 1 42 42 H 1.08996 * 109.59079 * 113.81899 * 16 15 13 43 43 H 1.08999 * 109.58697 * 353.52920 * 16 15 13 44 44 H 1.09001 * 109.49601 * 65.24407 * 17 16 15 45 45 H 1.08994 * 109.49784 * 185.30754 * 17 16 15 46 46 H 1.08994 * 109.46425 * 301.34402 * 18 17 16 47 47 H 0.96993 * 120.00351 * 179.97438 * 22 21 19 48 48 H 1.08992 * 109.49618 * 58.58273 * 27 18 17 49 49 H 1.09004 * 109.49471 * 178.68445 * 27 18 17 50 50 H 1.09004 * 109.53476 * 6.54178 * 28 15 13 51 51 H 1.08998 * 109.67904 * 246.23054 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8844 -2.7928 2.4448 7 6 1.2170 -4.1690 2.4060 8 6 0.2459 -4.5154 3.5364 9 6 1.6229 -5.1816 3.4788 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8580 1.1590 -2.4117 13 6 2.6458 -0.7226 -3.5772 14 8 3.0373 -1.8686 -3.4988 15 7 2.6607 -0.0852 -4.7646 16 6 3.2979 -0.7007 -5.9367 17 6 4.3165 0.2831 -6.5213 18 6 3.6229 1.6156 -6.8138 19 6 4.6141 2.5751 -7.4202 20 1 5.6363 2.2654 -7.5813 21 6 4.2161 3.8478 -7.7704 22 7 2.9713 4.2247 -7.5747 23 14 5.4447 5.0369 -8.5227 24 1 5.9752 4.4664 -9.7871 25 1 4.7716 6.3297 -8.8077 26 1 6.5637 5.2598 -7.5723 27 6 3.0752 2.2042 -5.5115 28 6 2.0426 1.2422 -4.9156 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7994 1.2056 33 1 1.7516 -0.1582 2.1370 34 1 2.9675 -2.9140 2.4256 35 1 1.5932 -2.2730 3.3575 36 1 0.9895 -4.5533 1.4116 37 1 0.0822 -3.7627 4.3075 38 1 -0.6202 -5.1278 3.2858 39 1 1.6620 -6.2320 3.1903 40 1 2.3651 -4.8672 4.2124 41 1 2.2490 -1.6317 -1.1526 42 1 2.5404 -0.9305 -6.6860 43 1 3.8058 -1.6174 -5.6372 44 1 5.1219 0.4419 -5.8042 45 1 4.7270 -0.1244 -7.4451 46 1 2.8019 1.4521 -7.5118 47 1 2.6914 5.1202 -7.8207 48 1 3.8922 2.3449 -4.8040 49 1 2.6018 3.1644 -5.7171 50 1 1.7225 1.6084 -3.9400 51 1 1.1816 1.1727 -5.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346414765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:20 Heat of formation + Delta-G solvation = -83.023502 kcal Electronic energy + Delta-G solvation = -29773.263204 eV Core-core repulsion = 25674.012255 eV Total energy + Delta-G solvation = -4099.250949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69298 -39.15006 -38.40369 -37.21214 -36.91289 -35.28891 -33.42155 -31.28086 -31.16248 -29.98898 -27.93215 -26.64915 -26.20548 -24.64609 -22.82626 -22.56458 -22.26985 -21.21597 -20.83062 -20.28431 -18.82139 -17.47463 -17.33306 -16.86302 -16.45592 -16.11539 -15.80598 -15.48475 -15.33210 -15.15166 -14.57491 -14.49290 -14.26796 -13.74390 -13.64708 -13.32220 -13.09457 -12.88863 -12.74751 -12.72181 -12.52524 -12.17344 -11.99308 -11.94058 -11.65474 -11.40757 -11.34201 -11.30042 -10.90998 -10.84176 -10.81225 -10.68454 -10.58193 -10.31482 -10.02787 -9.90478 -9.65528 -9.29583 -9.20195 -9.13436 -8.48630 -8.27731 -8.04607 -5.97233 -4.03739 1.66269 2.55438 3.03555 3.32951 3.37682 3.40300 3.42705 3.48894 3.81019 4.30618 4.44311 4.44828 4.46625 4.58713 4.65475 4.74494 4.86114 4.93868 5.05810 5.16949 5.18937 5.21450 5.30675 5.32344 5.44623 5.51139 5.65797 5.68585 5.75328 5.78343 5.88409 5.95364 6.09399 6.13185 6.20058 6.29408 6.50150 6.65869 6.74848 6.80682 6.85297 7.02837 7.20492 7.22520 7.37828 7.70491 7.84030 7.96394 8.01904 8.13151 8.30592 8.45917 8.99133 9.60736 11.08114 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.002051 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.063382 B =13650.875038 C =14170.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.105 0.895 4 C 0.054 3.946 5 O -0.380 6.380 6 C 0.094 3.906 7 C -0.153 4.153 8 C -0.178 4.178 9 C -0.175 4.175 10 N -0.696 5.696 11 C 0.511 3.489 12 O -0.502 6.502 13 C 0.500 3.500 14 O -0.545 6.545 15 N -0.561 5.561 16 C 0.107 3.893 17 C -0.122 4.122 18 C 0.045 3.955 19 C -0.513 4.513 20 H 0.054 0.946 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.116 4.116 28 C 0.047 3.953 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.415 0.585 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.261 0.739 48 H 0.036 0.964 49 H 0.104 0.896 50 H 0.139 0.861 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -13.681 22.112 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.123 0.877 4 C -0.024 4.024 5 O -0.299 6.299 6 C 0.017 3.983 7 C -0.172 4.172 8 C -0.215 4.215 9 C -0.212 4.212 10 N -0.350 5.350 11 C 0.293 3.707 12 O -0.378 6.378 13 C 0.282 3.718 14 O -0.424 6.424 15 N -0.293 5.293 16 C -0.015 4.015 17 C -0.161 4.161 18 C 0.027 3.973 19 C -0.551 4.551 20 H 0.072 0.928 21 C -0.140 4.140 22 N -0.529 5.529 23 Si 0.719 3.281 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.155 4.155 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.252 0.748 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.122 0.878 50 H 0.155 0.845 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.718 -13.323 21.929 26.288 hybrid contribution 0.968 0.418 -0.323 1.103 sum -4.750 -12.905 21.606 25.610 Atomic orbital electron populations 1.22085 0.94074 1.03151 1.02536 1.21139 0.95571 0.96855 0.82392 0.87672 1.22825 0.97720 0.84216 0.97590 1.87892 1.70267 1.26203 1.45563 1.21997 0.97760 0.90095 0.88412 1.22150 1.03713 0.95041 0.96256 1.23081 0.93707 1.03688 1.00991 1.22988 0.98540 0.98180 1.01444 1.45834 1.65518 1.15104 1.08578 1.20449 0.78268 0.87014 0.84935 1.90409 1.49010 1.15669 1.82749 1.19853 0.81009 0.86340 0.84615 1.90696 1.49319 1.16826 1.85608 1.48289 1.52705 1.20211 1.08057 1.21872 0.96440 0.96948 0.86195 1.22016 0.97139 0.97490 0.99406 1.18692 0.95369 0.89980 0.93283 1.21152 0.96281 0.97412 1.40279 0.92823 1.24963 0.95160 0.98154 0.95703 1.69838 1.15844 1.19261 1.47928 0.86680 0.81411 0.80298 0.79703 1.20369 1.21325 1.20379 1.21917 0.96562 1.00008 0.96971 1.23479 0.96658 0.80795 1.06380 0.91625 0.91805 0.91296 0.92253 0.91466 0.92762 0.93153 0.86658 0.88722 0.88588 0.88330 0.88691 0.74794 0.91595 0.90274 0.92936 0.91897 0.95504 0.92936 0.94468 0.87800 0.84477 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.29 37.16 0.35 -1.20 16 2 C 0.14 1.44 2.98 -67.93 -0.20 1.23 16 3 H 0.11 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.41 5.68 37.16 0.21 0.62 16 5 O -0.38 -3.32 9.20 -35.23 -0.32 -3.64 16 6 C 0.09 0.65 6.22 37.16 0.23 0.88 16 7 C -0.15 -1.06 6.05 -90.62 -0.55 -1.61 16 8 C -0.18 -1.04 10.18 -26.69 -0.27 -1.31 16 9 C -0.17 -0.96 10.26 -26.69 -0.27 -1.24 16 10 N -0.70 -8.64 5.05 -54.24 -0.27 -8.91 16 11 C 0.51 8.13 7.75 -11.59 -0.09 8.04 16 12 O -0.50 -8.84 12.77 5.50 0.07 -8.77 16 13 C 0.50 9.03 7.74 -11.58 -0.09 8.94 16 14 O -0.54 -10.32 15.95 5.49 0.09 -10.24 16 15 N -0.56 -10.76 2.98 -173.04 -0.52 -11.28 16 16 C 0.11 2.00 6.40 -3.71 -0.02 1.98 16 17 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 18 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 19 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.89 -25.10 11.31 55.43 0.63 -24.47 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.12 -2.75 5.15 -26.60 -0.14 -2.89 16 28 C 0.05 0.95 6.28 -3.56 -0.02 0.92 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.30 7.88 -51.93 -0.41 -0.11 16 36 H 0.12 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.42 4.99 7.87 -40.82 -0.32 4.67 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.41 7.06 -51.93 -0.37 1.04 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.10 2.73 6.03 -51.93 -0.31 2.42 16 50 H 0.14 2.74 3.82 -56.59 -0.22 2.52 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -30.20 407.32 -9.52 -39.72 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.71 Total: 5.30 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.59 Total: -0.10 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.16 Total: -44.66 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.17 Total: -22.65 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.20 -9.52 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346414765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds