Wall clock time and date at job start Tue Mar 31 2020 21:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46621 * 2 1 4 4 C 1.52997 * 109.46869 * 119.99686 * 2 1 3 5 5 O 1.42906 * 109.47136 * 55.00293 * 4 2 1 6 6 C 1.42898 * 113.99822 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47070 * 180.02562 * 6 5 4 8 8 C 1.52999 * 117.50233 * 243.74737 * 7 6 5 9 9 C 1.53003 * 117.50227 * 175.08408 * 7 6 5 10 10 N 1.46497 * 109.47173 * 240.00042 * 2 1 3 11 11 C 1.34772 * 120.00067 * 84.99890 * 10 2 1 12 12 O 1.21346 * 120.00219 * 359.97438 * 11 10 2 13 13 C 1.49454 * 120.00049 * 179.97438 * 11 10 2 14 14 O 1.21354 * 119.99831 * 354.01745 * 13 11 10 15 15 N 1.34774 * 120.00149 * 174.01030 * 13 11 10 16 16 C 1.46925 * 120.62999 * 172.43284 * 15 13 11 17 17 C 1.53199 * 108.89314 * 233.67460 * 16 15 13 18 18 C 1.53039 * 109.31077 * 305.29477 * 17 16 15 19 19 C 1.50699 * 109.46070 * 181.36688 * 18 17 16 20 20 H 1.08007 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00383 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99967 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47031 * 60.00482 * 23 21 19 25 25 H 1.48505 * 109.47140 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47484 * 300.00174 * 23 21 19 27 27 C 1.53050 * 109.53930 * 61.36452 * 18 17 16 28 28 C 1.47205 * 120.81367 * 352.56785 * 15 13 11 29 29 H 1.08991 * 109.47566 * 299.99891 * 1 2 3 30 30 H 1.08999 * 109.47210 * 60.00623 * 1 2 3 31 31 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46944 * 175.00136 * 4 2 1 33 33 H 1.08999 * 109.47278 * 294.99906 * 4 2 1 34 34 H 1.09000 * 109.47338 * 299.99890 * 6 5 4 35 35 H 1.09000 * 109.47231 * 59.99915 * 6 5 4 36 36 H 1.09009 * 115.54815 * 29.41718 * 7 6 5 37 37 H 1.09001 * 117.49475 * 0.02562 * 8 7 6 38 38 H 1.08996 * 117.50039 * 145.01719 * 8 7 6 39 39 H 1.08998 * 117.49997 * 214.97822 * 9 7 6 40 40 H 1.08996 * 117.49402 * 0.02562 * 9 7 6 41 41 H 0.97000 * 119.99774 * 265.00096 * 10 2 1 42 42 H 1.08996 * 109.59079 * 113.81899 * 16 15 13 43 43 H 1.08999 * 109.58697 * 353.52920 * 16 15 13 44 44 H 1.09001 * 109.49601 * 65.24407 * 17 16 15 45 45 H 1.08994 * 109.49784 * 185.30754 * 17 16 15 46 46 H 1.08994 * 109.46425 * 301.34402 * 18 17 16 47 47 H 0.96993 * 120.00351 * 179.97438 * 22 21 19 48 48 H 1.08992 * 109.49618 * 58.58273 * 27 18 17 49 49 H 1.09004 * 109.49471 * 178.68445 * 27 18 17 50 50 H 1.09004 * 109.53476 * 6.54178 * 28 15 13 51 51 H 1.08998 * 109.67904 * 246.23054 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4702 -2.0303 1.3095 6 6 1.8844 -2.7928 2.4448 7 6 1.2170 -4.1690 2.4060 8 6 0.2459 -4.5154 3.5364 9 6 1.6229 -5.1816 3.4788 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8580 1.1590 -2.4117 13 6 2.6458 -0.7226 -3.5772 14 8 3.0373 -1.8686 -3.4988 15 7 2.6607 -0.0852 -4.7646 16 6 3.2979 -0.7007 -5.9367 17 6 4.3165 0.2831 -6.5213 18 6 3.6229 1.6156 -6.8138 19 6 4.6141 2.5751 -7.4202 20 1 5.6363 2.2654 -7.5813 21 6 4.2161 3.8478 -7.7704 22 7 2.9713 4.2247 -7.5747 23 14 5.4447 5.0369 -8.5227 24 1 5.9752 4.4664 -9.7871 25 1 4.7716 6.3297 -8.8077 26 1 6.5637 5.2598 -7.5723 27 6 3.0752 2.2042 -5.5115 28 6 2.0426 1.2422 -4.9156 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1263 -0.7994 1.2056 33 1 1.7516 -0.1582 2.1370 34 1 2.9675 -2.9140 2.4256 35 1 1.5932 -2.2730 3.3575 36 1 0.9895 -4.5533 1.4116 37 1 0.0822 -3.7627 4.3075 38 1 -0.6202 -5.1278 3.2858 39 1 1.6620 -6.2320 3.1903 40 1 2.3651 -4.8672 4.2124 41 1 2.2490 -1.6317 -1.1526 42 1 2.5404 -0.9305 -6.6860 43 1 3.8058 -1.6174 -5.6372 44 1 5.1219 0.4419 -5.8042 45 1 4.7270 -0.1244 -7.4451 46 1 2.8019 1.4521 -7.5118 47 1 2.6914 5.1202 -7.8207 48 1 3.8922 2.3449 -4.8040 49 1 2.6018 3.1644 -5.7171 50 1 1.7225 1.6084 -3.9400 51 1 1.1816 1.1727 -5.5803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346414765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:19 Heat of formation + Delta-G solvation = -101.074559 kcal Electronic energy + Delta-G solvation = -29774.045957 eV Core-core repulsion = 25674.012255 eV Total energy + Delta-G solvation = -4100.033702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03857 -40.16317 -39.35184 -38.58737 -37.82036 -36.26628 -35.25232 -33.02456 -32.22369 -31.72593 -28.51714 -28.38277 -26.93942 -26.16224 -24.24388 -23.85657 -23.24041 -22.11553 -21.62244 -21.53169 -20.44593 -18.81277 -18.40412 -18.23319 -17.77200 -17.27030 -16.89676 -16.58138 -16.38321 -16.37577 -15.92883 -15.66907 -15.36740 -15.04897 -14.76612 -14.60139 -14.50139 -14.40895 -14.15723 -13.88241 -13.50159 -13.33426 -13.24916 -13.13039 -12.79558 -12.65442 -12.54118 -12.37760 -12.32005 -12.12110 -12.06986 -11.94395 -11.91385 -11.49149 -11.30390 -11.18566 -11.06259 -10.99737 -10.44758 -10.42690 -10.36013 -9.96922 -9.68972 -8.06415 -6.20506 0.30312 1.30247 1.42755 1.43476 1.51098 2.09537 2.42616 2.44635 2.55167 2.96688 3.19679 3.27047 3.70495 3.92784 3.99889 4.02443 4.11074 4.14693 4.26988 4.31393 4.37146 4.38121 4.46321 4.48462 4.51350 4.56340 4.63505 4.69593 4.76603 4.79522 4.79646 4.91115 4.94256 4.99848 5.03309 5.14340 5.20008 5.25188 5.26148 5.34392 5.39075 5.40049 5.55023 5.63467 5.97023 6.02923 6.11803 6.22606 6.29591 6.39172 6.69820 6.89194 6.93512 7.46967 8.97031 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.002051 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.063382 B =13650.875038 C =14170.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.104 0.896 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.093 3.907 7 C -0.170 4.170 8 C -0.177 4.177 9 C -0.168 4.168 10 N -0.678 5.678 11 C 0.513 3.487 12 O -0.523 6.523 13 C 0.500 3.500 14 O -0.551 6.551 15 N -0.570 5.570 16 C 0.112 3.888 17 C -0.113 4.113 18 C 0.042 3.958 19 C -0.535 4.535 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.275 1.275 27 C -0.105 4.105 28 C 0.061 3.939 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.419 0.581 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.003 0.997 47 H 0.261 0.739 48 H 0.022 0.978 49 H 0.075 0.925 50 H 0.147 0.853 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -14.425 23.891 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.122 0.878 4 C -0.018 4.018 5 O -0.318 6.318 6 C 0.017 3.983 7 C -0.189 4.189 8 C -0.214 4.214 9 C -0.205 4.205 10 N -0.331 5.331 11 C 0.294 3.706 12 O -0.401 6.401 13 C 0.283 3.717 14 O -0.431 6.431 15 N -0.301 5.301 16 C -0.010 4.010 17 C -0.151 4.151 18 C 0.023 3.977 19 C -0.573 4.573 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.553 5.553 23 Si 0.778 3.222 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.200 1.200 27 C -0.144 4.144 28 C -0.059 4.059 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.256 0.744 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.041 0.959 49 H 0.093 0.907 50 H 0.163 0.837 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.370 -14.109 23.742 28.135 hybrid contribution 0.847 0.580 -0.818 1.312 sum -4.523 -13.529 22.925 27.001 Atomic orbital electron populations 1.22025 0.93663 1.02858 1.02658 1.21398 0.95860 0.96993 0.82163 0.87803 1.22814 0.97886 0.84102 0.97042 1.87866 1.70642 1.26673 1.46584 1.22090 0.98025 0.89886 0.88318 1.22159 1.05059 0.95654 0.95985 1.23153 0.93860 1.03861 1.00542 1.23068 0.98575 0.98075 1.00763 1.45860 1.63812 1.15144 1.08267 1.20076 0.78626 0.86693 0.85164 1.90377 1.50447 1.16353 1.82922 1.20225 0.80393 0.86246 0.84866 1.90686 1.49488 1.17165 1.85784 1.48274 1.53219 1.19837 1.08807 1.21831 0.96249 0.96504 0.86424 1.21861 0.97189 0.96193 0.99860 1.18665 0.94453 0.91614 0.92934 1.21521 0.96682 0.98384 1.40745 0.93114 1.25710 0.96839 0.99772 0.96185 1.69971 1.17278 1.19544 1.48460 0.85708 0.79255 0.78224 0.79006 1.19699 1.20929 1.20010 1.21675 0.96643 0.99653 0.96407 1.23249 0.95388 0.80739 1.06528 0.89391 0.93797 0.91716 0.91701 0.88917 0.92309 0.91777 0.88200 0.87928 0.88543 0.88014 0.87647 0.74364 0.90493 0.88932 0.93714 0.90918 0.97919 0.92974 0.95942 0.90659 0.83704 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.29 71.98 0.67 -2.07 16 2 C 0.14 2.53 2.98 44.99 0.13 2.66 16 3 H 0.10 1.99 7.58 -2.39 -0.02 1.97 16 4 C 0.06 0.75 5.68 71.98 0.41 1.16 16 5 O -0.40 -6.17 9.20 -148.98 -1.37 -7.54 16 6 C 0.09 1.10 6.22 71.98 0.45 1.55 16 7 C -0.17 -2.15 6.05 -10.79 -0.07 -2.21 16 8 C -0.18 -1.79 10.18 30.62 0.31 -1.48 16 9 C -0.17 -1.57 10.26 30.62 0.31 -1.26 16 10 N -0.68 -15.98 5.05 -443.88 -2.24 -18.22 16 11 C 0.51 15.91 7.75 87.27 0.68 16.59 16 12 O -0.52 -18.20 12.77 -3.23 -0.04 -18.24 16 13 C 0.50 17.61 7.74 87.27 0.68 18.29 16 14 O -0.55 -20.14 15.95 -3.26 -0.05 -20.19 16 15 N -0.57 -21.58 2.98 -819.75 -2.45 -24.03 16 16 C 0.11 4.07 6.40 86.36 0.55 4.62 16 17 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 18 C 0.04 2.10 2.06 -11.51 -0.02 2.08 16 19 C -0.54 -29.65 8.56 25.60 0.22 -29.43 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 21 C 0.01 0.77 5.30 84.65 0.45 1.21 16 22 N -0.91 -52.52 11.31 21.45 0.24 -52.28 16 23 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C -0.11 -5.11 5.15 30.68 0.16 -4.95 16 28 C 0.06 2.51 6.28 86.31 0.54 3.05 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.21 7.56 -2.39 -0.02 1.19 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.58 7.88 -2.39 -0.02 0.56 16 36 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.10 0.86 8.03 -2.39 -0.02 0.84 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.42 9.47 7.87 -92.71 -0.73 8.74 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.09 3.15 7.06 -2.39 -0.02 3.13 16 44 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 4.10 6.03 -2.38 -0.01 4.09 16 50 H 0.15 5.82 3.82 -76.24 -0.29 5.53 16 51 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -64.83 407.32 1.66 -63.17 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.09 Total: 26.18 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.63 Total: 5.25 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -4.45 Total: -94.53 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.46 Total: -45.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.83 1.66 -63.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346414765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.905 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds