Wall clock time and date at job start Tue Mar 31 2020 21:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46634 * 2 1 4 4 C 1.52995 * 109.47008 * 240.00351 * 2 1 3 5 5 O 1.42898 * 109.47452 * 64.99762 * 4 2 1 6 6 C 1.52997 * 109.47229 * 120.00172 * 2 1 3 7 7 C 1.53046 * 109.45894 * 300.07021 * 6 2 1 8 8 C 1.53197 * 109.31160 * 178.61494 * 7 6 2 9 9 N 1.46928 * 108.77453 * 54.63225 * 8 7 6 10 10 C 1.34775 * 120.62854 * 126.37082 * 9 8 7 11 11 O 1.21350 * 119.99987 * 175.04683 * 10 9 8 12 12 C 1.49451 * 120.00233 * 355.04235 * 10 9 8 13 13 O 1.21347 * 119.99678 * 85.37581 * 12 10 9 14 14 N 1.34781 * 120.00041 * 265.38118 * 12 10 9 15 15 C 1.46500 * 119.99610 * 184.99805 * 14 12 10 16 16 C 1.53005 * 109.46818 * 174.96667 * 15 14 12 17 17 C 1.50703 * 115.54857 * 304.76636 * 16 15 14 18 18 H 1.08000 * 119.99591 * 95.15883 * 17 16 15 19 19 C 1.37876 * 120.00302 * 275.16278 * 17 16 15 20 20 N 1.31517 * 119.99448 * 5.11911 * 19 17 16 21 21 Si 1.86797 * 120.00068 * 185.12438 * 19 17 16 22 22 H 1.48506 * 109.47000 * 59.99973 * 21 19 17 23 23 H 1.48500 * 109.46895 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47078 * 299.99650 * 21 19 17 25 25 C 1.52999 * 117.49771 * 159.09737 * 16 15 14 26 26 C 1.52992 * 117.49840 * 90.43745 * 16 15 14 27 27 C 1.46928 * 118.73939 * 306.38971 * 9 8 7 28 28 C 1.53041 * 109.46094 * 179.97438 * 6 2 1 29 29 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47304 * 299.99679 * 1 2 3 31 31 H 1.09004 * 109.47450 * 59.99868 * 1 2 3 32 32 H 1.09007 * 109.46870 * 304.99978 * 4 2 1 33 33 H 1.08993 * 109.47364 * 184.99903 * 4 2 1 34 34 H 0.96698 * 114.00025 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.45642 * 60.02387 * 6 2 1 36 36 H 1.09000 * 109.49501 * 298.56025 * 7 6 2 37 37 H 1.09000 * 109.49820 * 58.65975 * 7 6 2 38 38 H 1.09002 * 109.58296 * 294.84721 * 8 7 6 39 39 H 1.08997 * 109.58619 * 174.41875 * 8 7 6 40 40 H 0.96997 * 119.99728 * 4.99783 * 14 12 10 41 41 H 1.08995 * 109.47242 * 294.96299 * 15 14 12 42 42 H 1.09001 * 109.46880 * 54.96891 * 15 14 12 43 43 H 0.97010 * 119.99449 * 185.00100 * 20 19 17 44 44 H 1.08996 * 117.49662 * 0.02562 * 25 16 15 45 45 H 1.08996 * 117.49538 * 145.01989 * 25 16 15 46 46 H 1.08999 * 117.50045 * 214.98458 * 26 16 15 47 47 H 1.09002 * 117.50221 * 359.97438 * 26 16 15 48 48 H 1.08994 * 109.58520 * 293.82324 * 27 9 8 49 49 H 1.08997 * 109.58228 * 173.39325 * 27 9 8 50 50 H 1.08991 * 109.49465 * 301.33825 * 28 6 2 51 51 H 1.09000 * 109.49461 * 61.40001 * 28 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.6619 0.0168 -2.4131 6 6 2.0400 -0.7213 1.2492 7 6 1.5283 -0.0006 2.4986 8 6 2.0121 -0.7454 3.7469 9 7 3.4741 -0.8768 3.6822 10 6 4.2471 -0.4571 4.7034 11 8 5.4445 -0.6521 4.6779 12 6 3.6295 0.2487 5.8670 13 8 3.1631 -0.3910 6.7866 14 7 3.5907 1.5957 5.8950 15 6 3.0856 2.2893 7.0824 16 6 3.2649 3.7986 6.9062 17 6 4.6684 4.2552 6.6018 18 1 4.9751 4.4122 5.5782 19 6 5.5610 4.4724 7.6299 20 7 5.2209 4.1854 8.8675 21 14 7.2532 5.1745 7.2651 22 1 7.1089 6.5079 6.6275 23 1 8.0156 5.3119 8.5320 24 1 7.9798 4.2622 6.3460 25 6 2.3929 4.7184 7.7632 26 6 2.1141 4.5765 6.2648 27 6 4.0773 -1.4740 2.4830 28 6 3.5704 -0.7217 1.2486 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 3.1262 -0.7994 -1.2057 34 1 1.9531 -0.3828 -3.2440 35 1 1.6769 -1.7490 1.2487 36 1 1.9113 1.0198 2.5126 37 1 0.4385 0.0194 2.4864 38 1 1.5574 -1.7355 3.7808 39 1 1.7349 -0.1829 4.6384 40 1 3.8971 2.1057 5.1289 41 1 2.0277 2.0620 7.2135 42 1 3.6401 1.9576 7.9603 43 1 5.8197 4.4051 9.5984 44 1 1.6919 4.2483 8.4529 45 1 2.8343 5.6540 8.1065 46 1 2.3722 5.4188 5.6229 47 1 1.2295 4.0131 5.9680 48 1 3.7910 -2.5234 2.4140 49 1 5.1627 -1.3922 2.5406 50 1 3.9337 -1.2147 0.3470 51 1 3.9345 0.3054 1.2734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349735414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:52 Heat of formation + Delta-G solvation = -110.346515 kcal Electronic energy + Delta-G solvation = -30617.094282 eV Core-core repulsion = 26516.658518 eV Total energy + Delta-G solvation = -4100.435764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71056 -39.18294 -38.07851 -36.97811 -36.68825 -34.79297 -33.49882 -32.00867 -31.70325 -30.91824 -27.45343 -26.73278 -25.68105 -25.16677 -23.62963 -22.72204 -21.30306 -21.01225 -20.24359 -19.65972 -19.03719 -17.99842 -17.51659 -16.68261 -16.33312 -15.87203 -15.53348 -15.04539 -14.85852 -14.78371 -14.68407 -14.40719 -14.20906 -14.07984 -13.88758 -13.58015 -13.18499 -13.11230 -12.82027 -12.77879 -12.53874 -12.20054 -11.94122 -11.87502 -11.65326 -11.53742 -11.39962 -11.08811 -11.04563 -10.91121 -10.90630 -10.67389 -10.56020 -10.55700 -10.31381 -10.19138 -9.70916 -9.20791 -9.02748 -8.84005 -8.51143 -8.50510 -8.15591 -6.11418 -4.20847 2.34923 2.50032 2.93866 3.28856 3.34399 3.36448 3.76426 3.81934 4.32064 4.35614 4.39612 4.58394 4.65614 4.78893 4.87927 4.90848 5.02211 5.07309 5.13906 5.17573 5.18976 5.26012 5.28602 5.42289 5.47122 5.55987 5.58031 5.62153 5.71504 5.75590 5.83480 5.88897 5.93741 6.05876 6.16445 6.23272 6.32374 6.38880 6.40396 6.62481 6.73677 7.02569 7.03608 7.12003 7.26294 7.32245 7.40723 7.78267 7.92579 7.98406 8.26978 8.49270 8.80541 9.48030 10.96929 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012481 B = 0.002915 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.952244 B = 9603.398536 C = 9848.827223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 H 0.080 0.920 4 C 0.077 3.923 5 O -0.573 6.573 6 C -0.081 4.081 7 C -0.131 4.131 8 C 0.107 3.893 9 N -0.601 5.601 10 C 0.518 3.482 11 O -0.512 6.512 12 C 0.507 3.493 13 O -0.532 6.532 14 N -0.675 5.675 15 C 0.159 3.841 16 C 0.027 3.973 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.076 3.924 20 N -0.873 5.873 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.146 4.146 26 C -0.210 4.210 27 C 0.111 3.889 28 C -0.134 4.134 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.405 0.595 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.263 0.737 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.095 0.905 50 H 0.078 0.922 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -10.527 -19.147 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.001 4.001 5 O -0.379 6.379 6 C -0.099 4.099 7 C -0.169 4.169 8 C -0.015 4.015 9 N -0.337 5.337 10 C 0.301 3.699 11 O -0.385 6.385 12 C 0.286 3.714 13 O -0.409 6.409 14 N -0.324 5.324 15 C 0.037 3.963 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.129 4.129 20 N -0.508 5.508 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.184 4.184 26 C -0.247 4.247 27 C -0.011 4.011 28 C -0.172 4.172 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.240 0.760 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.096 0.904 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.088 -10.734 -17.792 22.680 hybrid contribution 1.371 0.255 -0.765 1.591 sum -7.717 -10.479 -18.557 22.666 Atomic orbital electron populations 1.21828 0.94529 1.01699 1.02248 1.21135 0.96644 1.00495 0.92225 0.90207 1.22343 0.98210 0.94016 0.85526 1.86482 1.81546 1.53428 1.16401 1.21144 0.95109 0.99824 0.93840 1.22051 1.01532 1.00154 0.93211 1.21808 0.79027 1.01352 0.99354 1.48126 1.07336 1.61172 1.17084 1.20709 0.87016 0.79505 0.82711 1.90778 1.14246 1.56067 1.77435 1.19909 0.80176 0.83903 0.87387 1.90773 1.46425 1.66212 1.37540 1.45967 1.61750 1.04323 1.20382 1.21145 0.95890 0.92815 0.86461 1.19002 0.91329 0.87491 0.99601 1.20287 0.93655 1.47205 0.92957 0.92213 1.24958 0.98146 0.94580 0.95170 1.69985 1.37568 1.44494 0.98759 0.86708 0.84264 0.79646 0.77760 1.20211 1.21218 1.20001 1.22481 1.02437 1.02508 0.91004 1.23063 1.00532 1.04291 0.96812 1.21639 0.99964 0.96435 0.83072 1.22099 0.95460 1.02060 0.97593 0.92991 0.92159 0.92077 0.93821 0.93265 0.77597 0.90696 0.90695 0.89870 0.90740 0.89341 0.75968 0.93988 0.90394 0.92735 0.91596 0.89728 0.90274 0.91572 0.91283 0.88692 0.90406 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.74 37.16 0.32 -0.74 16 2 C -0.09 -0.64 2.21 -90.62 -0.20 -0.84 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.08 0.50 6.21 37.16 0.23 0.73 16 5 O -0.57 -4.33 13.19 -35.23 -0.46 -4.79 16 6 C -0.08 -0.58 1.74 -90.58 -0.16 -0.73 16 7 C -0.13 -1.09 5.04 -26.61 -0.13 -1.23 16 8 C 0.11 1.13 6.36 -3.71 -0.02 1.11 16 9 N -0.60 -7.74 2.97 -173.27 -0.52 -8.26 16 10 C 0.52 9.10 7.54 -11.59 -0.09 9.02 16 11 O -0.51 -10.54 16.53 5.50 0.09 -10.45 16 12 C 0.51 9.96 5.61 -11.58 -0.06 9.89 16 13 O -0.53 -11.85 17.08 5.50 0.09 -11.76 16 14 N -0.67 -13.23 5.35 -60.73 -0.33 -13.55 16 15 C 0.16 3.49 5.57 -4.04 -0.02 3.46 16 16 C 0.03 0.60 1.49 -155.66 -0.23 0.37 16 17 C -0.50 -12.82 8.25 -34.44 -0.28 -13.10 16 18 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 19 C 0.08 2.02 5.40 -17.82 -0.10 1.93 16 20 N -0.87 -24.17 12.90 55.43 0.72 -23.46 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.15 -3.20 9.44 -26.70 -0.25 -3.46 16 26 C -0.21 -4.13 9.93 -26.70 -0.27 -4.40 16 27 C 0.11 1.13 6.42 -3.71 -0.02 1.11 16 28 C -0.13 -1.06 5.05 -26.61 -0.13 -1.19 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 31 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.29 6.14 -51.93 -0.32 -0.03 16 34 H 0.38 1.21 9.12 45.56 0.42 1.62 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.59 6.36 -51.93 -0.33 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.09 6.30 -51.93 -0.33 0.76 16 40 H 0.41 7.49 8.14 -40.82 -0.33 7.16 16 41 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 46 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 50 H 0.08 0.48 6.25 -51.93 -0.32 0.15 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -32.22 407.54 -8.49 -40.71 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.78 Total: 7.65 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.42 Total: 1.92 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.13 Total: -45.26 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.28 Total: -27.00 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.22 -8.49 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349735414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.636 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds