Wall clock time and date at job start Tue Mar 31 2020 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.52997 * 109.47080 * 240.00183 * 2 1 3 5 5 O 1.42906 * 109.47074 * 304.99661 * 4 2 1 6 6 C 1.42897 * 114.00038 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47254 * 180.02562 * 6 5 4 8 8 C 1.53001 * 117.49842 * 243.74816 * 7 6 5 9 9 C 1.53000 * 117.49862 * 175.08983 * 7 6 5 10 10 N 1.46506 * 109.46972 * 120.00098 * 2 1 3 11 11 C 1.34776 * 119.99836 * 275.00043 * 10 2 1 12 12 O 1.21345 * 120.00056 * 0.02562 * 11 10 2 13 13 C 1.49450 * 119.99780 * 180.02562 * 11 10 2 14 14 O 1.21348 * 120.00377 * 6.39687 * 13 11 10 15 15 N 1.34780 * 120.00011 * 186.39522 * 13 11 10 16 16 C 1.46928 * 120.62876 * 7.07464 * 15 13 11 17 17 C 1.53188 * 108.77641 * 233.58599 * 16 15 13 18 18 C 1.53041 * 109.31364 * 305.36812 * 17 16 15 19 19 C 1.53038 * 109.53786 * 61.36669 * 18 17 16 20 20 H 1.09000 * 109.50177 * 58.58648 * 19 18 17 21 21 C 1.50705 * 109.49893 * 178.68297 * 19 18 17 22 22 H 1.07999 * 119.99393 * 34.61631 * 21 19 18 23 23 C 1.37868 * 119.99865 * 214.61709 * 21 19 18 24 24 N 1.31521 * 119.99881 * 175.10829 * 23 21 19 25 25 Si 1.86802 * 120.00327 * 355.10951 * 23 21 19 26 26 H 1.48503 * 109.46937 * 95.26480 * 25 23 21 27 27 H 1.48501 * 109.47105 * 215.26330 * 25 23 21 28 28 H 1.48502 * 109.46983 * 335.26395 * 25 23 21 29 29 C 1.46927 * 120.62915 * 186.80108 * 15 13 11 30 30 H 1.09005 * 109.47146 * 299.99914 * 1 2 3 31 31 H 1.08997 * 109.47049 * 59.99940 * 1 2 3 32 32 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47351 * 185.00273 * 4 2 1 34 34 H 1.08995 * 109.47436 * 65.00252 * 4 2 1 35 35 H 1.09002 * 109.47594 * 300.00796 * 6 5 4 36 36 H 1.09004 * 109.47221 * 60.00032 * 6 5 4 37 37 H 1.09000 * 115.55123 * 29.41539 * 7 6 5 38 38 H 1.09003 * 117.49850 * 359.97438 * 8 7 6 39 39 H 1.09004 * 117.49817 * 145.02112 * 8 7 6 40 40 H 1.08999 * 117.49726 * 214.98010 * 9 7 6 41 41 H 1.09005 * 117.50266 * 359.97438 * 9 7 6 42 42 H 0.96995 * 119.99665 * 94.99911 * 10 2 1 43 43 H 1.09004 * 109.58754 * 353.38021 * 16 15 13 44 44 H 1.09003 * 109.57941 * 113.65797 * 16 15 13 45 45 H 1.08999 * 109.49503 * 65.31839 * 17 16 15 46 46 H 1.09006 * 109.49519 * 185.41518 * 17 16 15 47 47 H 1.09002 * 109.45827 * 181.38356 * 18 17 16 48 48 H 1.08998 * 109.46017 * 301.35589 * 18 17 16 49 49 H 0.96997 * 119.99872 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.58133 * 246.19505 * 29 15 13 51 51 H 1.08993 * 109.59021 * 6.62354 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8844 -2.7929 -2.4447 7 6 1.2161 -4.1687 -2.4065 8 6 2.1243 -5.3915 -2.2625 9 6 1.4424 -5.0974 -3.6011 10 7 2.0183 -0.6907 1.1962 11 6 2.1470 -0.0183 2.3572 12 8 1.8579 1.1590 2.4118 13 6 2.6456 -0.7227 3.5773 14 8 3.0441 -1.8661 3.4976 15 7 2.6529 -0.0880 4.7662 16 6 2.0334 1.2364 4.9115 17 6 3.0612 2.1977 5.5167 18 6 3.5980 1.6081 6.8230 19 6 4.2937 0.2757 6.5353 20 1 5.1051 0.4348 5.8250 21 6 4.8502 -0.2883 7.8173 22 1 4.3217 -0.1385 8.7472 23 6 6.0336 -0.9954 7.8029 24 7 6.5689 -1.4047 8.9324 25 14 6.8770 -1.3720 6.1792 26 1 7.9086 -0.3393 5.9060 27 1 7.5215 -2.7077 6.2543 28 1 5.8714 -1.3683 5.0865 29 6 3.2750 -0.7099 5.9431 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.7517 -0.1583 -2.1369 35 1 1.5933 -2.2731 -3.3575 36 1 2.9676 -2.9141 -2.4254 37 1 0.2422 -4.2048 -1.9183 38 1 3.1980 -5.2159 -2.1954 39 1 1.7477 -6.2323 -1.6799 40 1 0.6176 -5.7449 -3.8986 41 1 2.0672 -4.7282 -4.4145 42 1 2.2489 -1.6318 1.1526 43 1 1.7214 1.6031 3.9336 44 1 1.1665 1.1641 5.5683 45 1 3.8841 2.3387 4.8160 46 1 2.5863 3.1578 5.7189 47 1 4.3114 2.3016 7.2682 48 1 2.7712 1.4441 7.5141 49 1 7.4013 -1.9025 8.9222 50 1 2.5088 -0.9370 6.6842 51 1 3.7825 -1.6276 5.6460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350878493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:25 Heat of formation + Delta-G solvation = -82.922413 kcal Electronic energy + Delta-G solvation = -30115.104253 eV Core-core repulsion = 26015.857687 eV Total energy + Delta-G solvation = -4099.246566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76875 -39.18271 -38.44743 -37.23541 -37.01934 -35.36063 -33.23846 -31.84954 -31.32116 -30.43199 -27.96753 -26.42562 -25.97028 -25.13282 -23.28714 -22.78471 -21.80989 -21.25680 -20.88188 -20.31516 -18.90425 -17.58989 -17.46034 -16.82724 -16.66313 -16.37284 -16.01576 -15.59650 -15.37649 -14.91954 -14.69834 -14.40938 -14.06856 -13.92997 -13.81056 -13.51634 -13.47797 -13.13723 -12.74197 -12.67344 -12.51841 -12.40914 -12.11526 -11.99573 -11.92167 -11.62234 -11.46554 -11.35240 -11.14448 -10.82270 -10.69766 -10.66274 -10.60960 -10.39048 -10.05979 -9.92242 -9.71112 -9.50220 -9.38369 -9.19428 -8.67452 -8.60487 -8.08912 -6.12178 -4.12567 1.61296 2.52261 3.01534 3.29724 3.39983 3.42999 3.47724 3.48800 3.77070 4.28971 4.41707 4.43407 4.46716 4.53975 4.62100 4.70384 4.86053 4.90218 5.04393 5.09400 5.16424 5.19389 5.21776 5.26341 5.40277 5.50215 5.53958 5.57441 5.67509 5.69420 5.77175 5.78486 5.94632 6.05249 6.10585 6.23810 6.27744 6.48347 6.54665 6.61164 6.67343 6.74954 6.83253 6.89382 7.13657 7.27803 7.36227 7.68771 7.76774 7.93163 8.30031 8.48630 8.93511 9.51198 11.00275 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.002752 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.415571 B =10170.386313 C =11766.715364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.105 0.895 4 C 0.053 3.947 5 O -0.380 6.380 6 C 0.094 3.906 7 C -0.154 4.154 8 C -0.176 4.176 9 C -0.175 4.175 10 N -0.694 5.694 11 C 0.514 3.486 12 O -0.513 6.513 13 C 0.494 3.506 14 O -0.532 6.532 15 N -0.569 5.569 16 C 0.051 3.949 17 C -0.131 4.131 18 C -0.106 4.106 19 C 0.008 3.992 20 H 0.034 0.966 21 C -0.512 4.512 22 H 0.076 0.924 23 C 0.075 3.925 24 N -0.895 5.895 25 Si 0.870 3.130 26 H -0.279 1.279 27 H -0.287 1.287 28 H -0.257 1.257 29 C 0.107 3.893 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.417 0.583 43 H 0.146 0.854 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.265 0.735 50 H 0.067 0.933 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 0.403 -25.647 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.122 0.878 4 C -0.024 4.024 5 O -0.299 6.299 6 C 0.017 3.983 7 C -0.172 4.172 8 C -0.213 4.213 9 C -0.212 4.212 10 N -0.348 5.348 11 C 0.296 3.704 12 O -0.391 6.391 13 C 0.276 3.724 14 O -0.409 6.409 15 N -0.301 5.301 16 C -0.070 4.070 17 C -0.169 4.169 18 C -0.144 4.144 19 C -0.012 4.012 20 H 0.053 0.947 21 C -0.550 4.550 22 H 0.094 0.906 23 C -0.128 4.128 24 N -0.532 5.532 25 Si 0.697 3.303 26 H -0.205 1.205 27 H -0.213 1.213 28 H -0.181 1.181 29 C -0.014 4.014 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.254 0.746 43 H 0.163 0.837 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.156 0.455 -25.410 28.172 hybrid contribution 0.916 -0.661 -0.833 1.404 sum -11.240 -0.206 -26.243 28.550 Atomic orbital electron populations 1.22083 0.94040 1.03238 1.02445 1.21147 0.95576 0.96785 0.82479 0.87751 1.22821 0.97780 0.84316 0.97508 1.87892 1.70180 1.26098 1.45740 1.22006 0.97547 0.90333 0.88366 1.22127 1.01493 0.90158 1.03437 1.23103 0.98889 0.99503 0.99806 1.22986 1.03633 1.02726 0.91879 1.45884 1.65055 1.15296 1.08576 1.20615 0.77839 0.86898 0.85031 1.90301 1.50065 1.15868 1.82887 1.19877 0.81360 0.86586 0.84585 1.90739 1.47966 1.16877 1.85364 1.48452 1.53551 1.19275 1.08833 1.23138 0.95253 0.81896 1.06761 1.21911 0.98623 0.97733 0.98618 1.21597 0.99622 0.98149 0.95043 1.19554 0.93344 0.91582 0.96701 0.94739 1.20904 1.06831 1.34347 0.92942 0.90601 1.25079 0.96778 0.94888 0.96048 1.69906 1.19556 1.37820 1.25908 0.86950 0.80199 0.77903 0.85264 1.20482 1.21266 1.18081 1.22799 0.96357 0.98654 0.83554 0.91886 0.91591 0.91232 0.92272 0.91427 0.92864 0.93037 0.86779 0.88560 0.88438 0.88400 0.88733 0.74554 0.83737 0.92325 0.92353 0.91803 0.92244 0.92820 0.92545 0.91510 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.29 37.16 0.35 -1.07 16 2 C 0.14 1.35 2.98 -67.93 -0.20 1.15 16 3 H 0.10 0.98 7.58 -51.93 -0.39 0.58 16 4 C 0.05 0.40 5.68 37.16 0.21 0.61 16 5 O -0.38 -3.34 9.19 -35.23 -0.32 -3.67 16 6 C 0.09 0.67 6.22 37.16 0.23 0.90 16 7 C -0.15 -1.12 6.05 -90.62 -0.55 -1.67 16 8 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 9 C -0.18 -1.02 10.25 -26.69 -0.27 -1.29 16 10 N -0.69 -8.56 5.05 -54.24 -0.27 -8.83 16 11 C 0.51 7.88 7.74 -11.59 -0.09 7.79 16 12 O -0.51 -8.04 12.76 5.50 0.07 -7.97 16 13 C 0.49 9.31 7.74 -11.58 -0.09 9.22 16 14 O -0.53 -11.25 15.94 5.50 0.09 -11.17 16 15 N -0.57 -11.01 2.97 -173.01 -0.51 -11.52 16 16 C 0.05 0.84 6.27 -3.71 -0.02 0.81 16 17 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 18 C -0.11 -2.11 5.15 -26.69 -0.14 -2.25 16 19 C 0.01 0.19 1.79 -91.42 -0.16 0.02 16 20 H 0.03 0.85 5.61 -51.93 -0.29 0.56 16 21 C -0.51 -14.13 8.86 -34.44 -0.31 -14.44 16 22 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 23 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -27.22 13.96 55.43 0.77 -26.44 16 25 Si 0.87 22.08 26.63 -169.99 -4.53 17.55 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 28 H -0.26 -6.50 5.97 56.52 0.34 -6.16 16 29 C 0.11 2.36 5.52 -3.48 -0.02 2.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.66 7.56 -51.93 -0.39 0.27 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.42 5.23 7.87 -40.82 -0.32 4.90 16 43 H 0.15 2.31 3.78 -56.76 -0.21 2.10 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 50 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 51 H 0.08 2.02 5.94 -51.93 -0.31 1.72 16 LS Contribution 404.70 15.07 6.10 6.10 Total: -1.00 -32.02 404.70 -8.92 -40.94 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.71 Total: 4.67 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.60 Total: 0.34 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.01 Total: -46.80 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.17 Total: -22.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.53 Total: 17.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.02 -8.92 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350878493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.983 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds