Wall clock time and date at job start Tue Mar 31 2020 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47162 * 2 1 4 4 C 1.52997 * 109.47080 * 240.00183 * 2 1 3 5 5 O 1.42906 * 109.47074 * 304.99661 * 4 2 1 6 6 C 1.42897 * 114.00038 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47254 * 180.02562 * 6 5 4 8 8 C 1.53001 * 117.49842 * 243.74816 * 7 6 5 9 9 C 1.53000 * 117.49862 * 175.08983 * 7 6 5 10 10 N 1.46506 * 109.46972 * 120.00098 * 2 1 3 11 11 C 1.34776 * 119.99836 * 275.00043 * 10 2 1 12 12 O 1.21345 * 120.00056 * 0.02562 * 11 10 2 13 13 C 1.49450 * 119.99780 * 180.02562 * 11 10 2 14 14 O 1.21348 * 120.00377 * 6.39687 * 13 11 10 15 15 N 1.34780 * 120.00011 * 186.39522 * 13 11 10 16 16 C 1.46928 * 120.62876 * 7.07464 * 15 13 11 17 17 C 1.53188 * 108.77641 * 233.58599 * 16 15 13 18 18 C 1.53041 * 109.31364 * 305.36812 * 17 16 15 19 19 C 1.53038 * 109.53786 * 61.36669 * 18 17 16 20 20 H 1.09000 * 109.50177 * 58.58648 * 19 18 17 21 21 C 1.50705 * 109.49893 * 178.68297 * 19 18 17 22 22 H 1.07999 * 119.99393 * 34.61631 * 21 19 18 23 23 C 1.37868 * 119.99865 * 214.61709 * 21 19 18 24 24 N 1.31521 * 119.99881 * 175.10829 * 23 21 19 25 25 Si 1.86802 * 120.00327 * 355.10951 * 23 21 19 26 26 H 1.48503 * 109.46937 * 95.26480 * 25 23 21 27 27 H 1.48501 * 109.47105 * 215.26330 * 25 23 21 28 28 H 1.48502 * 109.46983 * 335.26395 * 25 23 21 29 29 C 1.46927 * 120.62915 * 186.80108 * 15 13 11 30 30 H 1.09005 * 109.47146 * 299.99914 * 1 2 3 31 31 H 1.08997 * 109.47049 * 59.99940 * 1 2 3 32 32 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47351 * 185.00273 * 4 2 1 34 34 H 1.08995 * 109.47436 * 65.00252 * 4 2 1 35 35 H 1.09002 * 109.47594 * 300.00796 * 6 5 4 36 36 H 1.09004 * 109.47221 * 60.00032 * 6 5 4 37 37 H 1.09000 * 115.55123 * 29.41539 * 7 6 5 38 38 H 1.09003 * 117.49850 * 359.97438 * 8 7 6 39 39 H 1.09004 * 117.49817 * 145.02112 * 8 7 6 40 40 H 1.08999 * 117.49726 * 214.98010 * 9 7 6 41 41 H 1.09005 * 117.50266 * 359.97438 * 9 7 6 42 42 H 0.96995 * 119.99665 * 94.99911 * 10 2 1 43 43 H 1.09004 * 109.58754 * 353.38021 * 16 15 13 44 44 H 1.09003 * 109.57941 * 113.65797 * 16 15 13 45 45 H 1.08999 * 109.49503 * 65.31839 * 17 16 15 46 46 H 1.09006 * 109.49519 * 185.41518 * 17 16 15 47 47 H 1.09002 * 109.45827 * 181.38356 * 18 17 16 48 48 H 1.08998 * 109.46017 * 301.35589 * 18 17 16 49 49 H 0.96997 * 119.99872 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.58133 * 246.19505 * 29 15 13 51 51 H 1.08993 * 109.59021 * 6.62354 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0304 -1.3094 6 6 1.8844 -2.7929 -2.4447 7 6 1.2161 -4.1687 -2.4065 8 6 2.1243 -5.3915 -2.2625 9 6 1.4424 -5.0974 -3.6011 10 7 2.0183 -0.6907 1.1962 11 6 2.1470 -0.0183 2.3572 12 8 1.8579 1.1590 2.4118 13 6 2.6456 -0.7227 3.5773 14 8 3.0441 -1.8661 3.4976 15 7 2.6529 -0.0880 4.7662 16 6 2.0334 1.2364 4.9115 17 6 3.0612 2.1977 5.5167 18 6 3.5980 1.6081 6.8230 19 6 4.2937 0.2757 6.5353 20 1 5.1051 0.4348 5.8250 21 6 4.8502 -0.2883 7.8173 22 1 4.3217 -0.1385 8.7472 23 6 6.0336 -0.9954 7.8029 24 7 6.5689 -1.4047 8.9324 25 14 6.8770 -1.3720 6.1792 26 1 7.9086 -0.3393 5.9060 27 1 7.5215 -2.7077 6.2543 28 1 5.8714 -1.3683 5.0865 29 6 3.2750 -0.7099 5.9431 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1263 -0.7995 -1.2056 34 1 1.7517 -0.1583 -2.1369 35 1 1.5933 -2.2731 -3.3575 36 1 2.9676 -2.9141 -2.4254 37 1 0.2422 -4.2048 -1.9183 38 1 3.1980 -5.2159 -2.1954 39 1 1.7477 -6.2323 -1.6799 40 1 0.6176 -5.7449 -3.8986 41 1 2.0672 -4.7282 -4.4145 42 1 2.2489 -1.6318 1.1526 43 1 1.7214 1.6031 3.9336 44 1 1.1665 1.1641 5.5683 45 1 3.8841 2.3387 4.8160 46 1 2.5863 3.1578 5.7189 47 1 4.3114 2.3016 7.2682 48 1 2.7712 1.4441 7.5141 49 1 7.4013 -1.9025 8.9222 50 1 2.5088 -0.9370 6.6842 51 1 3.7825 -1.6276 5.6460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350878493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:25 Heat of formation + Delta-G solvation = -104.010315 kcal Electronic energy + Delta-G solvation = -30116.018693 eV Core-core repulsion = 26015.857687 eV Total energy + Delta-G solvation = -4100.161006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07237 -40.19703 -39.37541 -38.63595 -37.84470 -36.27994 -35.14676 -33.58081 -32.23587 -32.16606 -28.53458 -27.77261 -26.98827 -26.75260 -24.61494 -23.43564 -23.26749 -22.09572 -21.61624 -21.54105 -20.51179 -19.21856 -18.59557 -18.28464 -17.77097 -17.16982 -16.93720 -16.80008 -16.50170 -16.34976 -15.70414 -15.54153 -15.41477 -15.34694 -15.02339 -14.82906 -14.50339 -14.45817 -14.26479 -14.01867 -13.74558 -13.38964 -13.30796 -13.11399 -13.01737 -12.64026 -12.60335 -12.40610 -12.32255 -12.10548 -12.04382 -11.97130 -11.68888 -11.65687 -11.33106 -11.27009 -11.18903 -11.15656 -10.80819 -10.45790 -10.37509 -10.03749 -9.69069 -8.36133 -6.38757 0.28288 1.23923 1.28363 1.32353 1.43420 2.07554 2.27706 2.41731 2.54358 2.94730 3.01444 3.24882 3.69137 3.89989 3.95523 4.02178 4.04914 4.13019 4.15745 4.22566 4.34635 4.37519 4.44763 4.44807 4.48037 4.54867 4.60741 4.66031 4.71970 4.74165 4.77027 4.82099 4.92350 4.94284 5.00721 5.00951 5.08712 5.21108 5.21684 5.24363 5.29392 5.36392 5.47929 5.55492 5.60723 5.65654 5.97643 6.20960 6.25188 6.32819 6.65655 6.72371 6.89595 7.27535 8.80233 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.002752 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.415571 B =10170.386313 C =11766.715364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.111 0.889 4 C 0.055 3.945 5 O -0.399 6.399 6 C 0.093 3.907 7 C -0.166 4.166 8 C -0.190 4.190 9 C -0.160 4.160 10 N -0.681 5.681 11 C 0.522 3.478 12 O -0.515 6.515 13 C 0.487 3.513 14 O -0.562 6.562 15 N -0.575 5.575 16 C 0.050 3.950 17 C -0.122 4.122 18 C -0.103 4.103 19 C 0.007 3.993 20 H 0.024 0.976 21 C -0.510 4.510 22 H 0.044 0.956 23 C 0.022 3.978 24 N -0.940 5.940 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.285 1.285 28 H -0.259 1.259 29 C 0.117 3.883 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.417 0.583 43 H 0.159 0.841 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.267 0.733 50 H 0.068 0.932 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 1.847 -28.998 31.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.129 0.871 4 C -0.022 4.022 5 O -0.319 6.319 6 C 0.017 3.983 7 C -0.184 4.184 8 C -0.227 4.227 9 C -0.197 4.197 10 N -0.333 5.333 11 C 0.303 3.697 12 O -0.394 6.394 13 C 0.270 3.730 14 O -0.441 6.441 15 N -0.307 5.307 16 C -0.069 4.069 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.013 4.013 20 H 0.042 0.958 21 C -0.548 4.548 22 H 0.062 0.938 23 C -0.176 4.176 24 N -0.580 5.580 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.183 1.183 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.254 0.746 43 H 0.175 0.825 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.257 1.922 -28.802 31.765 hybrid contribution 1.163 -1.128 0.215 1.635 sum -12.093 0.794 -28.587 31.050 Atomic orbital electron populations 1.22029 0.93418 1.02789 1.02943 1.21449 0.96004 0.97071 0.81766 0.87115 1.22860 0.97775 0.84112 0.97407 1.87868 1.70540 1.26776 1.46690 1.22092 0.97607 0.90134 0.88495 1.22164 1.01072 0.90575 1.04566 1.23152 0.98896 0.99523 1.01107 1.23064 1.03499 1.01706 0.91463 1.45951 1.63646 1.15223 1.08518 1.19852 0.78469 0.86679 0.84690 1.90278 1.50724 1.15609 1.82777 1.20559 0.80604 0.86386 0.85479 1.90717 1.49137 1.18331 1.85962 1.48452 1.53629 1.20307 1.08284 1.23373 0.95384 0.80247 1.07939 1.21863 0.98669 0.99132 0.96307 1.21507 0.99377 0.96050 0.97131 1.19507 0.93726 0.93680 0.94338 0.95764 1.21162 1.06417 1.33548 0.93669 0.93776 1.25800 0.97816 0.95148 0.98868 1.70022 1.20470 1.39551 1.27910 0.85984 0.79198 0.77877 0.81363 1.19280 1.21148 1.18313 1.22287 0.96111 0.97230 0.84897 0.93284 0.89167 0.92121 0.92095 0.88571 0.91166 0.92875 0.87802 0.88653 0.88822 0.87641 0.87516 0.74648 0.82456 0.90813 0.92826 0.88213 0.92708 0.92501 0.92386 0.91403 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.29 71.98 0.67 -1.66 16 2 C 0.14 2.25 2.98 44.99 0.13 2.38 16 3 H 0.11 1.71 7.58 -2.39 -0.02 1.69 16 4 C 0.06 0.67 5.68 71.98 0.41 1.07 16 5 O -0.40 -6.20 9.19 -148.98 -1.37 -7.57 16 6 C 0.09 1.13 6.22 71.98 0.45 1.58 16 7 C -0.17 -2.20 6.05 -10.79 -0.07 -2.27 16 8 C -0.19 -2.51 10.18 30.62 0.31 -2.20 16 9 C -0.16 -1.59 10.25 30.62 0.31 -1.28 16 10 N -0.68 -15.60 5.05 -443.87 -2.24 -17.84 16 11 C 0.52 15.09 7.74 87.27 0.68 15.77 16 12 O -0.52 -14.78 12.76 -3.23 -0.04 -14.82 16 13 C 0.49 17.94 7.74 87.27 0.68 18.61 16 14 O -0.56 -23.82 15.94 -3.24 -0.05 -23.87 16 15 N -0.58 -21.66 2.97 -819.64 -2.43 -24.09 16 16 C 0.05 1.54 6.27 86.36 0.54 2.08 16 17 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 18 C -0.10 -3.97 5.15 30.62 0.16 -3.81 16 19 C 0.01 0.34 1.79 -11.31 -0.02 0.32 16 20 H 0.02 1.18 5.61 -2.39 -0.01 1.17 16 21 C -0.51 -28.87 8.86 25.60 0.23 -28.65 16 22 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 23 C 0.02 1.30 5.47 84.65 0.46 1.76 16 24 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 25 Si 0.93 46.62 26.63 68.60 1.83 48.44 16 26 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.26 -12.95 5.97 99.48 0.59 -12.36 16 29 C 0.12 5.19 5.52 86.51 0.48 5.67 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.62 7.88 -2.39 -0.02 0.60 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 39 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.42 9.94 7.87 -92.71 -0.73 9.21 16 43 H 0.16 4.55 3.78 -78.85 -0.30 4.25 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 47 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 50 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 51 H 0.06 2.81 5.94 -2.39 -0.01 2.80 16 Total: -1.00 -70.68 404.70 1.39 -69.29 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -0.21 Total: 23.17 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.60 Total: 5.82 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.37 Total: -100.47 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.46 Total: -46.26 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.83 Total: 48.44 kcal Total: -70.68 1.39 -69.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350878493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.721 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds