Wall clock time and date at job start Tue Mar 31 2020 21:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.50710 * 109.46961 * 240.00160 * 2 1 3 5 5 H 1.07997 * 119.99875 * 335.25260 * 4 2 1 6 6 C 1.37878 * 120.00029 * 155.25798 * 4 2 1 7 7 N 1.31516 * 119.99788 * 355.15123 * 6 4 2 8 8 Si 1.86790 * 120.00017 * 175.15298 * 6 4 2 9 9 H 1.48494 * 109.47432 * 89.99888 * 8 6 4 10 10 H 1.48499 * 109.47076 * 329.99700 * 8 6 4 11 11 H 1.48504 * 109.46932 * 209.99845 * 8 6 4 12 12 N 1.46501 * 109.47343 * 120.00445 * 2 1 3 13 13 C 1.34776 * 119.99478 * 275.00017 * 12 2 1 14 14 O 1.21283 * 120.00171 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99839 * 179.97438 * 13 12 2 16 16 C 1.52993 * 119.29824 * 109.04830 * 15 13 12 17 17 C 1.53870 * 121.33123 * 180.88367 * 15 13 12 18 18 H 1.09000 * 121.32915 * 0.56629 * 17 15 13 19 19 C 1.54267 * 106.59842 * 138.05996 * 17 15 13 20 20 C 1.54885 * 104.19890 * 336.39088 * 19 17 15 21 21 H 1.09000 * 110.91928 * 156.32791 * 20 19 17 22 22 N 1.46505 * 110.75564 * 279.62997 * 20 19 17 23 23 C 1.34780 * 119.99599 * 268.32433 * 22 20 19 24 24 O 1.21508 * 119.99869 * 0.02562 * 23 22 20 25 25 O 1.34639 * 119.99673 * 179.97438 * 23 22 20 26 26 C 1.45202 * 116.99598 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.46924 * 60.00483 * 26 25 23 28 28 C 1.53004 * 109.46875 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47414 * 300.00043 * 26 25 23 30 30 C 1.54267 * 117.40914 * 314.70451 * 15 13 12 31 31 H 1.08998 * 109.47034 * 295.02940 * 1 2 3 32 32 H 1.09005 * 109.47060 * 55.02943 * 1 2 3 33 33 H 1.08998 * 109.47200 * 175.02897 * 1 2 3 34 34 H 0.97002 * 120.00361 * 5.12274 * 7 6 4 35 35 H 0.96997 * 120.00271 * 94.99707 * 12 2 1 36 36 H 1.09007 * 117.45908 * 218.90567 * 16 15 13 37 37 H 1.08998 * 117.46462 * 3.70673 * 16 15 13 38 38 H 1.09000 * 110.48576 * 217.70916 * 19 17 15 39 39 H 1.09005 * 110.48535 * 95.06812 * 19 17 15 40 40 H 0.96994 * 120.00113 * 88.32402 * 22 20 19 41 41 H 1.08993 * 109.47417 * 60.00051 * 27 26 25 42 42 H 1.09004 * 109.46817 * 179.97438 * 27 26 25 43 43 H 1.09002 * 109.47111 * 299.99684 * 27 26 25 44 44 H 1.09005 * 109.46790 * 59.99906 * 28 26 25 45 45 H 1.08991 * 109.46994 * 180.02562 * 28 26 25 46 46 H 1.09002 * 109.46997 * 300.00348 * 28 26 25 47 47 H 1.09002 * 109.46881 * 60.00157 * 29 26 25 48 48 H 1.08991 * 109.47187 * 180.02562 * 29 26 25 49 49 H 1.09005 * 109.47204 * 300.00678 * 29 26 25 50 50 H 1.09001 * 110.48987 * 2.31396 * 30 15 13 51 51 H 1.09001 * 110.48617 * 124.95468 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 1.4115 -1.4456 -1.7209 6 6 3.2845 -0.4219 -1.7303 7 7 4.0020 0.5396 -1.1914 8 14 3.9619 -1.3965 -3.1727 9 1 3.5744 -0.7336 -4.4437 10 1 3.4072 -2.7737 -3.1435 11 1 5.4426 -1.4571 -3.0774 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4114 15 6 2.6489 -0.7289 3.5877 16 6 4.0472 -0.4084 4.1194 17 6 2.7886 0.0037 4.9336 18 1 2.5199 1.0550 5.0372 19 6 2.2697 -0.9635 6.0177 20 6 1.3197 -1.9177 5.2523 21 1 1.2153 -2.8670 5.7777 22 7 0.0103 -1.2929 5.0481 23 6 -0.9728 -1.4779 5.9513 24 8 -0.7730 -2.1625 6.9351 25 8 -2.1759 -0.9034 5.7639 26 6 -3.1870 -1.1454 6.7775 27 6 -2.6896 -0.6265 8.1281 28 6 -4.4773 -0.4176 6.3948 29 6 -3.4598 -2.6476 6.8773 30 6 2.0501 -2.1157 3.9008 31 1 -0.3633 0.4348 0.9311 32 1 -0.3633 0.5890 -0.8422 33 1 -0.3633 -1.0238 -0.0890 34 1 3.6831 0.9958 -0.3970 35 1 2.2491 -1.6318 1.1525 36 1 4.6413 -1.2378 4.5033 37 1 4.6091 0.3774 3.6145 38 1 1.7235 -0.4170 6.7865 39 1 3.0961 -1.5209 6.4587 40 1 -0.1490 -0.7462 4.2629 41 1 -2.4953 0.4436 8.0570 42 1 -3.4488 -0.8078 8.8890 43 1 -1.7705 -1.1454 8.4006 44 1 -4.8314 -0.7877 5.4326 45 1 -5.2361 -0.5989 7.1559 46 1 -4.2832 0.6526 6.3233 47 1 -2.5408 -3.1664 7.1497 48 1 -4.2191 -2.8292 7.6379 49 1 -3.8142 -3.0173 5.9150 50 1 1.3435 -2.4102 3.1248 51 1 2.8409 -2.8592 4.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362272374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:22 Heat of formation + Delta-G solvation = -109.995322 kcal Electronic energy + Delta-G solvation = -30972.727573 eV Core-core repulsion = 26872.307037 eV Total energy + Delta-G solvation = -4100.420535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01201 -40.12584 -38.05735 -36.99882 -34.96616 -34.54228 -33.84205 -32.17959 -30.09943 -29.77469 -28.14879 -27.60667 -27.57209 -24.77128 -23.63084 -23.07551 -21.82400 -20.61628 -20.28582 -19.83112 -18.69998 -18.25139 -17.42311 -16.78650 -16.38602 -16.19290 -15.66555 -15.02125 -14.63092 -14.56218 -14.27658 -13.93778 -13.87370 -13.77128 -13.59841 -13.40526 -12.98607 -12.80485 -12.67375 -12.42884 -12.16460 -12.08669 -12.07009 -11.89665 -11.81475 -11.58602 -11.47392 -11.44347 -11.25206 -11.03488 -10.99341 -10.88808 -10.50601 -10.26032 -10.20236 -10.12646 -10.07769 -9.71278 -9.23812 -9.16702 -8.74930 -8.49267 -7.85910 -6.56762 -4.37689 2.10514 2.77185 3.18078 3.32844 3.34852 3.51649 3.77778 4.02127 4.12168 4.37031 4.44667 4.51959 4.55857 4.58531 4.70465 4.79706 5.16100 5.17377 5.25633 5.30026 5.32549 5.36237 5.38841 5.46328 5.48248 5.53909 5.59008 5.59802 5.65222 5.77110 5.79267 5.81333 5.91460 6.00761 6.08363 6.10395 6.16101 6.30965 6.33893 6.38402 6.48418 6.51286 6.57784 7.01653 7.22820 7.39674 7.64696 7.87336 8.23649 8.33552 8.59091 8.77876 9.19811 9.42837 10.80005 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.002913 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.852504 B = 9610.069481 C =10545.153587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.235 3.765 3 H 0.053 0.947 4 C -0.609 4.609 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.889 5.889 8 Si 1.072 2.928 9 H -0.285 1.285 10 H -0.286 1.286 11 H -0.283 1.283 12 N -0.697 5.697 13 C 0.535 3.465 14 O -0.563 6.563 15 C -0.175 4.175 16 C -0.120 4.120 17 C -0.136 4.136 18 H 0.118 0.882 19 C -0.105 4.105 20 C 0.160 3.840 21 H 0.103 0.897 22 N -0.696 5.696 23 C 0.653 3.347 24 O -0.574 6.574 25 O -0.364 6.364 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.142 4.142 29 C -0.183 4.183 30 C -0.096 4.096 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.277 0.723 35 H 0.386 0.614 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.410 0.590 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -6.600 16.938 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.135 3.865 3 H 0.071 0.929 4 C -0.647 4.647 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.523 5.523 8 Si 0.899 3.101 9 H -0.212 1.212 10 H -0.212 1.212 11 H -0.209 1.209 12 N -0.345 5.345 13 C 0.320 3.680 14 O -0.444 6.444 15 C -0.179 4.179 16 C -0.157 4.157 17 C -0.154 4.154 18 H 0.136 0.864 19 C -0.144 4.144 20 C 0.056 3.944 21 H 0.121 0.879 22 N -0.355 5.355 23 C 0.406 3.594 24 O -0.464 6.464 25 O -0.278 6.278 26 C 0.099 3.901 27 C -0.240 4.240 28 C -0.199 4.199 29 C -0.240 4.240 30 C -0.134 4.134 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.220 0.780 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.245 0.755 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.017 -6.186 16.402 19.277 hybrid contribution -1.286 -0.041 0.602 1.421 sum -9.304 -6.227 17.004 20.359 Atomic orbital electron populations 1.21989 0.98536 0.99875 0.99369 1.18871 0.89886 0.94993 0.82700 0.92950 1.22131 1.03880 1.27309 1.11393 0.92548 1.26017 0.93957 0.95824 1.02017 1.70719 1.41017 1.19225 1.21314 0.83515 0.76254 0.75338 0.74987 1.21191 1.21211 1.20899 1.47608 1.63814 1.13649 1.09436 1.19415 0.78100 0.86769 0.83740 1.90626 1.52315 1.16072 1.85357 1.22620 1.02368 0.97086 0.95812 1.23419 0.88865 1.02941 1.00472 1.23658 1.01641 0.99725 0.90399 0.86438 1.22422 0.98464 0.96689 0.96818 1.22033 0.80140 0.96186 0.96067 0.87869 1.44740 1.10535 1.54538 1.25674 1.18065 0.80396 0.78435 0.82467 1.90867 1.82560 1.43277 1.29710 1.86347 1.20891 1.69687 1.50906 1.22050 0.85595 0.96125 0.86321 1.22511 1.03910 1.01868 0.95709 1.21867 0.94203 1.01091 1.02736 1.22514 1.04162 0.94845 1.02486 1.22278 0.99784 0.94977 0.96328 0.95031 0.93078 0.94163 0.91087 0.78041 0.88254 0.87799 0.90634 0.89870 0.75468 0.92177 0.91272 0.89344 0.91399 0.90224 0.91409 0.89354 0.91264 0.92170 0.89804 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.46 37.16 0.35 -2.65 16 2 C 0.24 5.74 2.28 -69.08 -0.16 5.58 16 3 H 0.05 1.48 6.11 -51.93 -0.32 1.17 16 4 C -0.61 -15.85 8.50 -34.44 -0.29 -16.14 16 5 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 6 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 7 N -0.89 -25.77 13.63 55.43 0.76 -25.02 16 8 Si 1.07 23.57 29.91 -169.99 -5.08 18.49 16 9 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 N -0.70 -14.72 4.90 -54.92 -0.27 -14.99 16 13 C 0.54 10.83 7.38 -10.98 -0.08 10.74 16 14 O -0.56 -13.52 16.45 5.56 0.09 -13.43 16 15 C -0.18 -2.64 2.54 -154.54 -0.39 -3.03 16 16 C -0.12 -1.63 10.00 -25.43 -0.25 -1.88 16 17 C -0.14 -1.85 6.62 -88.19 -0.58 -2.43 16 18 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 19 C -0.11 -1.19 6.33 -25.07 -0.16 -1.35 16 20 C 0.16 1.86 3.30 -65.94 -0.22 1.64 16 21 H 0.10 1.16 7.55 -51.93 -0.39 0.77 16 22 N -0.70 -9.16 5.14 -56.78 -0.29 -9.45 16 23 C 0.65 9.09 8.06 54.06 0.44 9.53 16 24 O -0.57 -8.50 11.52 -19.28 -0.22 -8.72 16 25 O -0.36 -4.87 9.94 -40.32 -0.40 -5.27 16 26 C 0.14 1.45 1.13 -90.62 -0.10 1.35 16 27 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 28 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 29 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 30 C -0.10 -1.14 5.77 -25.07 -0.14 -1.29 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.28 8.28 6.66 -40.82 -0.27 8.01 16 35 H 0.39 7.53 8.11 -40.82 -0.33 7.20 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.41 5.80 8.72 -40.82 -0.36 5.44 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 51 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -31.24 409.79 -8.63 -39.87 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -8.64 Total: 15.45 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.74 Total: -3.10 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.19 Total: -49.46 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.53 Total: -27.42 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.49 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.24 -8.63 -39.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362272374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.125 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds