Wall clock time and date at job start Tue Mar 31 2020 21:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.50710 * 109.46961 * 240.00160 * 2 1 3 5 5 H 1.07997 * 119.99875 * 335.25260 * 4 2 1 6 6 C 1.37878 * 120.00029 * 155.25798 * 4 2 1 7 7 N 1.31516 * 119.99788 * 355.15123 * 6 4 2 8 8 Si 1.86790 * 120.00017 * 175.15298 * 6 4 2 9 9 H 1.48494 * 109.47432 * 89.99888 * 8 6 4 10 10 H 1.48499 * 109.47076 * 329.99700 * 8 6 4 11 11 H 1.48504 * 109.46932 * 209.99845 * 8 6 4 12 12 N 1.46501 * 109.47343 * 120.00445 * 2 1 3 13 13 C 1.34776 * 119.99478 * 275.00017 * 12 2 1 14 14 O 1.21283 * 120.00171 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99839 * 179.97438 * 13 12 2 16 16 C 1.52993 * 119.29824 * 109.04830 * 15 13 12 17 17 C 1.53870 * 121.33123 * 180.88367 * 15 13 12 18 18 H 1.09000 * 121.32915 * 0.56629 * 17 15 13 19 19 C 1.54267 * 106.59842 * 138.05996 * 17 15 13 20 20 C 1.54885 * 104.19890 * 336.39088 * 19 17 15 21 21 H 1.09000 * 110.91928 * 156.32791 * 20 19 17 22 22 N 1.46505 * 110.75564 * 279.62997 * 20 19 17 23 23 C 1.34780 * 119.99599 * 268.32433 * 22 20 19 24 24 O 1.21508 * 119.99869 * 0.02562 * 23 22 20 25 25 O 1.34639 * 119.99673 * 179.97438 * 23 22 20 26 26 C 1.45202 * 116.99598 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.46924 * 60.00483 * 26 25 23 28 28 C 1.53004 * 109.46875 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47414 * 300.00043 * 26 25 23 30 30 C 1.54267 * 117.40914 * 314.70451 * 15 13 12 31 31 H 1.08998 * 109.47034 * 295.02940 * 1 2 3 32 32 H 1.09005 * 109.47060 * 55.02943 * 1 2 3 33 33 H 1.08998 * 109.47200 * 175.02897 * 1 2 3 34 34 H 0.97002 * 120.00361 * 5.12274 * 7 6 4 35 35 H 0.96997 * 120.00271 * 94.99707 * 12 2 1 36 36 H 1.09007 * 117.45908 * 218.90567 * 16 15 13 37 37 H 1.08998 * 117.46462 * 3.70673 * 16 15 13 38 38 H 1.09000 * 110.48576 * 217.70916 * 19 17 15 39 39 H 1.09005 * 110.48535 * 95.06812 * 19 17 15 40 40 H 0.96994 * 120.00113 * 88.32402 * 22 20 19 41 41 H 1.08993 * 109.47417 * 60.00051 * 27 26 25 42 42 H 1.09004 * 109.46817 * 179.97438 * 27 26 25 43 43 H 1.09002 * 109.47111 * 299.99684 * 27 26 25 44 44 H 1.09005 * 109.46790 * 59.99906 * 28 26 25 45 45 H 1.08991 * 109.46994 * 180.02562 * 28 26 25 46 46 H 1.09002 * 109.46997 * 300.00348 * 28 26 25 47 47 H 1.09002 * 109.46881 * 60.00157 * 29 26 25 48 48 H 1.08991 * 109.47187 * 180.02562 * 29 26 25 49 49 H 1.09005 * 109.47204 * 300.00678 * 29 26 25 50 50 H 1.09001 * 110.48987 * 2.31396 * 30 15 13 51 51 H 1.09001 * 110.48617 * 124.95468 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 1.4115 -1.4456 -1.7209 6 6 3.2845 -0.4219 -1.7303 7 7 4.0020 0.5396 -1.1914 8 14 3.9619 -1.3965 -3.1727 9 1 3.5744 -0.7336 -4.4437 10 1 3.4072 -2.7737 -3.1435 11 1 5.4426 -1.4571 -3.0774 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4114 15 6 2.6489 -0.7289 3.5877 16 6 4.0472 -0.4084 4.1194 17 6 2.7886 0.0037 4.9336 18 1 2.5199 1.0550 5.0372 19 6 2.2697 -0.9635 6.0177 20 6 1.3197 -1.9177 5.2523 21 1 1.2153 -2.8670 5.7777 22 7 0.0103 -1.2929 5.0481 23 6 -0.9728 -1.4779 5.9513 24 8 -0.7730 -2.1625 6.9351 25 8 -2.1759 -0.9034 5.7639 26 6 -3.1870 -1.1454 6.7775 27 6 -2.6896 -0.6265 8.1281 28 6 -4.4773 -0.4176 6.3948 29 6 -3.4598 -2.6476 6.8773 30 6 2.0501 -2.1157 3.9008 31 1 -0.3633 0.4348 0.9311 32 1 -0.3633 0.5890 -0.8422 33 1 -0.3633 -1.0238 -0.0890 34 1 3.6831 0.9958 -0.3970 35 1 2.2491 -1.6318 1.1525 36 1 4.6413 -1.2378 4.5033 37 1 4.6091 0.3774 3.6145 38 1 1.7235 -0.4170 6.7865 39 1 3.0961 -1.5209 6.4587 40 1 -0.1490 -0.7462 4.2629 41 1 -2.4953 0.4436 8.0570 42 1 -3.4488 -0.8078 8.8890 43 1 -1.7705 -1.1454 8.4006 44 1 -4.8314 -0.7877 5.4326 45 1 -5.2361 -0.5989 7.1559 46 1 -4.2832 0.6526 6.3233 47 1 -2.5408 -3.1664 7.1497 48 1 -4.2191 -2.8292 7.6379 49 1 -3.8142 -3.0173 5.9150 50 1 1.3435 -2.4102 3.1248 51 1 2.8409 -2.8592 4.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362272374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:21 Heat of formation + Delta-G solvation = -130.430103 kcal Electronic energy + Delta-G solvation = -30973.613691 eV Core-core repulsion = 26872.307037 eV Total energy + Delta-G solvation = -4101.306654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06291 -41.33926 -39.51583 -38.07354 -36.80989 -35.61267 -34.77233 -34.13608 -31.56160 -31.07580 -29.29911 -28.35527 -28.31040 -26.79091 -24.91019 -24.26814 -23.09354 -22.23215 -21.22204 -20.91783 -20.28599 -19.24919 -19.09559 -17.95054 -17.74898 -17.18085 -16.89812 -16.44610 -15.80813 -15.72857 -15.60344 -15.47045 -15.41056 -15.21257 -14.86097 -14.45158 -14.26179 -13.91816 -13.77649 -13.35499 -13.30777 -13.12525 -13.06270 -12.91786 -12.89680 -12.87497 -12.77577 -12.68470 -12.65366 -12.37716 -12.29363 -12.09203 -12.04408 -11.87483 -11.39261 -11.37055 -11.12804 -11.09745 -10.80615 -10.54568 -10.52123 -10.19798 -9.68585 -8.70895 -6.52338 1.17994 1.56232 1.61708 1.67483 1.73853 1.81340 2.40530 2.54640 2.64267 3.11000 3.24018 3.39352 3.51163 3.72813 3.74711 3.79976 3.94489 3.99967 4.09790 4.29857 4.32724 4.44533 4.46784 4.56015 4.61851 4.63972 4.68052 4.68453 4.70482 4.76039 4.76614 4.82363 4.86730 4.86903 4.90469 5.00590 5.05711 5.11671 5.18102 5.21217 5.28293 5.28409 5.31188 5.43118 5.56580 5.73798 5.96723 6.11299 6.32977 6.44305 7.00190 7.29533 7.37137 7.53227 8.64284 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.002913 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.852504 B = 9610.069481 C =10545.153587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.237 3.763 3 H 0.004 0.996 4 C -0.613 4.613 5 H 0.063 0.937 6 C -0.017 4.017 7 N -0.920 5.920 8 Si 1.121 2.879 9 H -0.278 1.278 10 H -0.261 1.261 11 H -0.287 1.287 12 N -0.694 5.694 13 C 0.531 3.469 14 O -0.609 6.609 15 C -0.187 4.187 16 C -0.109 4.109 17 C -0.128 4.128 18 H 0.092 0.908 19 C -0.093 4.093 20 C 0.160 3.840 21 H 0.117 0.883 22 N -0.699 5.699 23 C 0.650 3.350 24 O -0.584 6.584 25 O -0.379 6.379 26 C 0.122 3.878 27 C -0.178 4.178 28 C -0.138 4.138 29 C -0.177 4.177 30 C -0.084 4.084 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.257 0.743 35 H 0.397 0.603 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.403 0.597 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -9.311 17.996 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.135 3.865 3 H 0.022 0.978 4 C -0.651 4.651 5 H 0.081 0.919 6 C -0.219 4.219 7 N -0.556 5.556 8 Si 0.942 3.058 9 H -0.204 1.204 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.342 5.342 13 C 0.318 3.682 14 O -0.492 6.492 15 C -0.190 4.190 16 C -0.146 4.146 17 C -0.147 4.147 18 H 0.110 0.890 19 C -0.131 4.131 20 C 0.057 3.943 21 H 0.135 0.865 22 N -0.357 5.357 23 C 0.404 3.596 24 O -0.475 6.475 25 O -0.294 6.294 26 C 0.086 3.914 27 C -0.235 4.235 28 C -0.195 4.195 29 C -0.234 4.234 30 C -0.121 4.121 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.237 0.763 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.112 0.888 49 H 0.077 0.923 50 H 0.095 0.905 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.501 -8.928 17.483 21.392 hybrid contribution -1.232 0.896 0.318 1.557 sum -9.733 -8.032 17.800 21.820 Atomic orbital electron populations 1.21863 0.96486 1.01002 0.99356 1.18623 0.91457 0.92607 0.83803 0.97844 1.22382 1.03863 1.26903 1.11941 0.91881 1.27464 0.94583 0.95719 1.04120 1.70870 1.41904 1.21208 1.21583 0.82895 0.75484 0.75263 0.72153 1.20362 1.18477 1.21234 1.47124 1.64048 1.13967 1.09062 1.20181 0.76871 0.86292 0.84843 1.90598 1.54070 1.18345 1.86235 1.22515 1.03857 0.98884 0.93755 1.23536 0.88348 1.03361 0.99353 1.23661 1.01534 0.99016 0.90464 0.89019 1.22404 0.99122 0.96031 0.95576 1.22165 0.79436 0.96648 0.96054 0.86497 1.44898 1.11125 1.54380 1.25250 1.18173 0.80655 0.78385 0.82416 1.90859 1.82826 1.43782 1.30052 1.86355 1.21159 1.69743 1.52124 1.22447 0.85806 0.97017 0.86138 1.22460 1.03687 1.01208 0.96128 1.21905 0.93561 1.00493 1.03578 1.22458 1.03786 0.94032 1.03156 1.22308 1.00366 0.93377 0.96095 0.95087 0.93123 0.92264 0.93302 0.76788 0.84209 0.90252 0.91395 0.86695 0.76322 0.92562 0.88785 0.91480 0.91582 0.87516 0.91790 0.91473 0.88822 0.92322 0.90460 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 9.46 71.98 0.68 -4.92 16 2 C 0.24 11.89 2.28 44.25 0.10 11.99 16 3 H 0.00 0.21 6.11 -2.39 -0.01 0.20 16 4 C -0.61 -32.03 8.50 25.60 0.22 -31.81 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 7 N -0.92 -55.03 13.63 21.45 0.29 -54.74 16 8 Si 1.12 46.83 29.91 68.60 2.05 48.88 16 9 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.69 -29.85 4.90 -446.07 -2.18 -32.03 16 13 C 0.53 22.11 7.38 87.66 0.65 22.75 16 14 O -0.61 -30.90 16.45 -3.04 -0.05 -30.95 16 15 C -0.19 -5.49 2.54 -52.21 -0.13 -5.62 16 16 C -0.11 -2.81 10.00 31.44 0.31 -2.49 16 17 C -0.13 -3.39 6.62 -9.22 -0.06 -3.45 16 18 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 19 C -0.09 -1.89 6.33 31.67 0.20 -1.68 16 20 C 0.16 3.38 3.30 46.28 0.15 3.54 16 21 H 0.12 2.26 7.55 -2.39 -0.02 2.24 16 22 N -0.70 -18.00 5.14 -563.96 -2.90 -20.89 16 23 C 0.65 17.83 8.06 129.79 1.05 18.88 16 24 O -0.58 -16.86 11.52 19.82 0.23 -16.63 16 25 O -0.38 -10.10 9.94 -55.48 -0.55 -10.65 16 26 C 0.12 2.47 1.13 -10.79 -0.01 2.46 16 27 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 28 C -0.14 -2.08 8.85 71.98 0.64 -1.44 16 29 C -0.18 -3.30 8.37 71.98 0.60 -2.69 16 30 C -0.08 -1.79 5.77 31.67 0.18 -1.61 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.26 16.18 6.66 -92.71 -0.62 15.56 16 35 H 0.40 15.37 8.11 -92.71 -0.75 14.61 16 36 H 0.14 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.40 11.52 8.72 -92.71 -0.81 10.71 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.07 1.59 5.88 -2.39 -0.01 1.57 16 44 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.56 5.88 -2.39 -0.01 1.54 16 48 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 50 H 0.08 1.79 7.61 -2.39 -0.02 1.77 16 51 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.74 409.79 2.06 -69.68 By element: Atomic # 1 Polarization: 47.15 SS G_CDS: -0.47 Total: 46.68 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.64 Total: 0.65 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.79 Total: -107.66 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -0.37 Total: -58.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.05 Total: 48.88 kcal Total: -71.74 2.06 -69.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362272374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.751 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds