Wall clock time and date at job start Tue Mar 31 2020 21:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46799 * 2 1 4 4 C 1.50699 * 109.47035 * 120.00207 * 2 1 3 5 5 H 1.07994 * 119.99873 * 119.99712 * 4 2 1 6 6 C 1.37882 * 119.99454 * 300.00066 * 4 2 1 7 7 N 1.31511 * 120.00400 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99437 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46692 * 119.99976 * 8 6 4 11 11 H 1.48501 * 109.47151 * 239.99863 * 8 6 4 12 12 N 1.46499 * 109.47055 * 240.00095 * 2 1 3 13 13 C 1.34774 * 120.00142 * 84.99998 * 12 2 1 14 14 O 1.21285 * 119.99801 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00273 * 179.97438 * 13 12 2 16 16 C 1.53789 * 116.04826 * 281.75623 * 15 13 12 17 17 C 1.53728 * 87.32223 * 215.40014 * 16 15 13 18 18 C 1.53592 * 87.38533 * 25.44443 * 17 16 15 19 19 H 1.08996 * 116.04149 * 93.09730 * 18 17 16 20 20 C 1.53685 * 113.82596 * 231.10551 * 18 17 16 21 21 N 1.46740 * 106.79701 * 65.43320 * 20 18 17 22 22 C 1.34779 * 125.32643 * 198.06241 * 21 20 18 23 23 O 1.21508 * 119.99948 * 180.02562 * 22 21 20 24 24 O 1.34640 * 119.99808 * 0.04878 * 22 21 20 25 25 C 1.45198 * 116.99844 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47051 * 59.99447 * 25 24 22 27 27 C 1.53001 * 109.47083 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.47161 * 299.99746 * 25 24 22 29 29 C 1.46641 * 109.35018 * 18.10738 * 21 20 18 30 30 H 1.09006 * 109.47092 * 59.99900 * 1 2 3 31 31 H 1.09005 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47266 * 299.99973 * 1 2 3 33 33 H 0.97003 * 119.99902 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00319 * 264.99919 * 12 2 1 35 35 H 1.08998 * 113.57666 * 100.79468 * 16 15 13 36 36 H 1.08999 * 113.64730 * 330.01906 * 16 15 13 37 37 H 1.09002 * 113.58083 * 140.08805 * 17 16 15 38 38 H 1.09000 * 113.57905 * 270.79892 * 17 16 15 39 39 H 1.09000 * 109.94609 * 306.12343 * 20 18 17 40 40 H 1.08998 * 110.06450 * 184.81026 * 20 18 17 41 41 H 1.09007 * 109.47318 * 60.00539 * 26 25 24 42 42 H 1.09004 * 109.47030 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47948 * 299.99716 * 26 25 24 44 44 H 1.08998 * 109.47015 * 59.99754 * 27 25 24 45 45 H 1.09000 * 109.47004 * 179.97438 * 27 25 24 46 46 H 1.09001 * 109.46713 * 299.99471 * 27 25 24 47 47 H 1.09004 * 109.46952 * 59.99910 * 28 25 24 48 48 H 1.09000 * 109.47242 * 179.97438 * 28 25 24 49 49 H 1.08998 * 109.47103 * 300.00348 * 28 25 24 50 50 H 1.09000 * 109.75966 * 239.17242 * 29 21 20 51 51 H 1.08999 * 109.77862 * 118.44095 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.1464 -2.2871 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1659 -1.5868 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6500 -0.7285 -3.5875 16 6 4.1688 -0.9583 -3.6612 17 6 4.0570 -0.7303 -5.1774 18 6 2.7989 0.1021 -4.8883 19 1 2.9517 1.1748 -4.7697 20 6 1.5771 -0.3083 -5.7254 21 7 1.2158 -1.6684 -5.3097 22 6 0.4402 -2.5179 -6.0121 23 8 0.2019 -3.6261 -5.5744 24 8 -0.0701 -2.1386 -7.1989 25 6 -0.8960 -3.1051 -7.9004 26 6 -2.1017 -3.4709 -7.0324 27 6 -1.3822 -2.4991 -9.2185 28 6 -0.0750 -4.3634 -8.1892 29 6 1.8298 -1.9585 -4.0100 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.2491 -1.6318 -1.1527 35 1 4.4699 -1.9712 -3.3939 36 1 4.7520 -0.1943 -3.1473 37 1 4.8794 -0.1477 -5.5925 38 1 3.8570 -1.6411 -5.7417 39 1 1.8319 -0.2977 -6.7851 40 1 0.7475 0.3725 -5.5348 41 1 -2.6867 -2.5744 -6.8266 42 1 -2.7220 -4.1961 -7.5591 43 1 -1.7558 -3.9025 -6.0932 44 1 -0.5235 -2.2382 -9.8370 45 1 -2.0019 -3.2248 -9.7453 46 1 -1.9673 -1.6028 -9.0123 47 1 0.2710 -4.7950 -7.2499 48 1 -0.6952 -5.0891 -8.7153 49 1 0.7840 -4.1028 -8.8075 50 1 2.4843 -2.8258 -4.0970 51 1 1.0532 -2.1555 -3.2709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362273188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:05 Heat of formation + Delta-G solvation = -94.225460 kcal Electronic energy + Delta-G solvation = -31051.146627 eV Core-core repulsion = 26951.409924 eV Total energy + Delta-G solvation = -4099.736703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55626 -40.42326 -38.14688 -37.00694 -34.88606 -34.69550 -33.84416 -32.42701 -30.04152 -28.67864 -27.82815 -27.63235 -27.56975 -25.27615 -24.84692 -23.21355 -21.80235 -21.45234 -19.83990 -19.48785 -18.81280 -18.13165 -17.27836 -16.67014 -16.50555 -15.86152 -15.40749 -15.18126 -14.97302 -14.53102 -14.46196 -14.28586 -14.03068 -13.73464 -13.34570 -13.15156 -13.02354 -12.75237 -12.55657 -12.47670 -12.34841 -12.20202 -12.11049 -12.03895 -11.81873 -11.66072 -11.53992 -11.44794 -11.18598 -11.03362 -10.97284 -10.77372 -10.60848 -10.52844 -10.33180 -10.27407 -10.22018 -10.13419 -9.05950 -8.99762 -8.78271 -8.56310 -7.94373 -6.13350 -4.22546 1.94743 2.75732 3.23040 3.25015 3.31297 3.33981 3.73634 3.91499 4.07252 4.30558 4.38993 4.49539 4.52321 4.54548 4.63537 4.68399 5.07913 5.19297 5.21670 5.22878 5.28704 5.31613 5.32718 5.43480 5.45533 5.50935 5.55355 5.61681 5.64917 5.66314 5.74796 5.77785 5.82393 5.84952 6.01798 6.07885 6.11532 6.18042 6.31380 6.33374 6.81497 6.95652 7.13897 7.37135 7.42712 7.54361 7.68425 7.89817 8.13620 8.24194 8.63797 8.76405 9.07948 9.45054 10.92658 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002770 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.121317 B =10105.156782 C =10830.228210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.528 3.472 14 O -0.549 6.549 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.092 4.092 19 H 0.129 0.871 20 C 0.113 3.887 21 N -0.596 5.596 22 C 0.669 3.331 23 O -0.566 6.566 24 O -0.361 6.361 25 C 0.135 3.865 26 C -0.185 4.185 27 C -0.140 4.140 28 C -0.183 4.183 29 C 0.153 3.847 30 H 0.013 0.987 31 H 0.026 0.974 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.389 0.611 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -7.009 -22.611 23.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.311 3.689 14 O -0.427 6.427 15 C -0.131 4.131 16 C -0.147 4.147 17 C -0.169 4.169 18 C -0.111 4.111 19 H 0.147 0.853 20 C -0.010 4.010 21 N -0.337 5.337 22 C 0.425 3.575 23 O -0.456 6.456 24 O -0.276 6.276 25 C 0.099 3.901 26 C -0.242 4.242 27 C -0.197 4.197 28 C -0.240 4.240 29 C 0.031 3.969 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.077 0.923 50 H 0.099 0.901 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.640 -6.469 -22.434 23.357 hybrid contribution 0.221 -0.923 0.985 1.368 sum 0.861 -7.392 -21.449 22.703 Atomic orbital electron populations 1.22079 0.98458 0.99148 1.00872 1.18761 0.91006 0.93954 0.79971 0.93351 1.21251 1.32387 1.13202 0.90275 0.91977 1.24891 0.94801 0.94950 0.99082 1.69913 1.35925 1.22470 1.23782 0.86396 0.78617 0.79536 0.82571 1.19703 1.20889 1.20876 1.46526 1.64453 1.13558 1.10443 1.19573 0.78395 0.87076 0.83817 1.90656 1.51135 1.15935 1.85022 1.23014 0.97411 0.96799 0.95916 1.22818 0.92247 1.03144 0.96447 1.22846 0.97337 1.00103 0.96579 1.23429 0.94138 1.00975 0.92537 0.85312 1.21793 0.97380 0.82566 0.99212 1.46806 1.50678 1.15227 1.20995 1.17373 0.77924 0.82532 0.79717 1.90908 1.63282 1.20222 1.71150 1.86310 1.63206 1.46461 1.31574 1.22072 0.89374 0.87459 0.91235 1.22526 0.96949 1.02412 1.02286 1.21851 1.01782 1.01870 0.94187 1.22514 1.00301 0.96992 1.04181 1.21407 0.96473 0.95933 0.83101 0.96749 0.95463 0.89106 0.92626 0.77871 0.90330 0.88741 0.90454 0.89876 0.90150 0.90808 0.92092 0.91187 0.89285 0.91527 0.90180 0.91418 0.89338 0.91197 0.92253 0.90077 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.68 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.70 -14.38 5.00 -54.93 -0.27 -14.66 16 13 C 0.53 10.15 6.97 -10.99 -0.08 10.07 16 14 O -0.55 -12.66 16.12 5.55 0.09 -12.57 16 15 C -0.13 -1.77 1.30 -153.77 -0.20 -1.97 16 16 C -0.11 -1.22 7.21 -25.94 -0.19 -1.40 16 17 C -0.13 -1.26 7.28 -26.05 -0.19 -1.45 16 18 C -0.09 -1.09 4.44 -88.87 -0.40 -1.48 16 19 H 0.13 1.59 7.95 -51.93 -0.41 1.18 16 20 C 0.11 1.34 6.37 -3.56 -0.02 1.32 16 21 N -0.60 -8.07 3.14 -178.29 -0.56 -8.63 16 22 C 0.67 9.63 7.91 54.06 0.43 10.06 16 23 O -0.57 -9.15 12.19 -19.28 -0.23 -9.38 16 24 O -0.36 -4.57 9.45 -40.32 -0.38 -4.95 16 25 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 26 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 27 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 28 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 29 C 0.15 2.08 5.72 -3.57 -0.02 2.06 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16 35 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 39 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.99 7.72 -51.93 -0.40 0.59 16 51 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -31.59 402.85 -8.46 -40.05 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.74 Total: 7.45 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.04 Total: 5.24 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.21 Total: -47.49 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.53 Total: -26.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.59 -8.46 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362273188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.171 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds