Wall clock time and date at job start Tue Mar 31 2020 21:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46799 * 2 1 4 4 C 1.50699 * 109.47035 * 120.00207 * 2 1 3 5 5 H 1.07994 * 119.99873 * 119.99712 * 4 2 1 6 6 C 1.37882 * 119.99454 * 300.00066 * 4 2 1 7 7 N 1.31511 * 120.00400 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99437 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46692 * 119.99976 * 8 6 4 11 11 H 1.48501 * 109.47151 * 239.99863 * 8 6 4 12 12 N 1.46499 * 109.47055 * 240.00095 * 2 1 3 13 13 C 1.34774 * 120.00142 * 84.99998 * 12 2 1 14 14 O 1.21285 * 119.99801 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00273 * 179.97438 * 13 12 2 16 16 C 1.53789 * 116.04826 * 281.75623 * 15 13 12 17 17 C 1.53728 * 87.32223 * 215.40014 * 16 15 13 18 18 C 1.53592 * 87.38533 * 25.44443 * 17 16 15 19 19 H 1.08996 * 116.04149 * 93.09730 * 18 17 16 20 20 C 1.53685 * 113.82596 * 231.10551 * 18 17 16 21 21 N 1.46740 * 106.79701 * 65.43320 * 20 18 17 22 22 C 1.34779 * 125.32643 * 198.06241 * 21 20 18 23 23 O 1.21508 * 119.99948 * 180.02562 * 22 21 20 24 24 O 1.34640 * 119.99808 * 0.04878 * 22 21 20 25 25 C 1.45198 * 116.99844 * 179.97438 * 24 22 21 26 26 C 1.52997 * 109.47051 * 59.99447 * 25 24 22 27 27 C 1.53001 * 109.47083 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.47161 * 299.99746 * 25 24 22 29 29 C 1.46641 * 109.35018 * 18.10738 * 21 20 18 30 30 H 1.09006 * 109.47092 * 59.99900 * 1 2 3 31 31 H 1.09005 * 109.47307 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47266 * 299.99973 * 1 2 3 33 33 H 0.97003 * 119.99902 * 180.02562 * 7 6 4 34 34 H 0.97001 * 120.00319 * 264.99919 * 12 2 1 35 35 H 1.08998 * 113.57666 * 100.79468 * 16 15 13 36 36 H 1.08999 * 113.64730 * 330.01906 * 16 15 13 37 37 H 1.09002 * 113.58083 * 140.08805 * 17 16 15 38 38 H 1.09000 * 113.57905 * 270.79892 * 17 16 15 39 39 H 1.09000 * 109.94609 * 306.12343 * 20 18 17 40 40 H 1.08998 * 110.06450 * 184.81026 * 20 18 17 41 41 H 1.09007 * 109.47318 * 60.00539 * 26 25 24 42 42 H 1.09004 * 109.47030 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.47948 * 299.99716 * 26 25 24 44 44 H 1.08998 * 109.47015 * 59.99754 * 27 25 24 45 45 H 1.09000 * 109.47004 * 179.97438 * 27 25 24 46 46 H 1.09001 * 109.46713 * 299.99471 * 27 25 24 47 47 H 1.09004 * 109.46952 * 59.99910 * 28 25 24 48 48 H 1.09000 * 109.47242 * 179.97438 * 28 25 24 49 49 H 1.08998 * 109.47103 * 300.00348 * 28 25 24 50 50 H 1.09000 * 109.75966 * 239.17242 * 29 21 20 51 51 H 1.08999 * 109.77862 * 118.44095 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.1464 -2.2871 3.6037 10 1 3.1465 -0.1874 4.8165 11 1 1.1659 -1.5868 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6500 -0.7285 -3.5875 16 6 4.1688 -0.9583 -3.6612 17 6 4.0570 -0.7303 -5.1774 18 6 2.7989 0.1021 -4.8883 19 1 2.9517 1.1748 -4.7697 20 6 1.5771 -0.3083 -5.7254 21 7 1.2158 -1.6684 -5.3097 22 6 0.4402 -2.5179 -6.0121 23 8 0.2019 -3.6261 -5.5744 24 8 -0.0701 -2.1386 -7.1989 25 6 -0.8960 -3.1051 -7.9004 26 6 -2.1017 -3.4709 -7.0324 27 6 -1.3822 -2.4991 -9.2185 28 6 -0.0750 -4.3634 -8.1892 29 6 1.8298 -1.9585 -4.0100 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7095 1.1618 3.4844 34 1 2.2491 -1.6318 -1.1527 35 1 4.4699 -1.9712 -3.3939 36 1 4.7520 -0.1943 -3.1473 37 1 4.8794 -0.1477 -5.5925 38 1 3.8570 -1.6411 -5.7417 39 1 1.8319 -0.2977 -6.7851 40 1 0.7475 0.3725 -5.5348 41 1 -2.6867 -2.5744 -6.8266 42 1 -2.7220 -4.1961 -7.5591 43 1 -1.7558 -3.9025 -6.0932 44 1 -0.5235 -2.2382 -9.8370 45 1 -2.0019 -3.2248 -9.7453 46 1 -1.9673 -1.6028 -9.0123 47 1 0.2710 -4.7950 -7.2499 48 1 -0.6952 -5.0891 -8.7153 49 1 0.7840 -4.1028 -8.8075 50 1 2.4843 -2.8258 -4.0970 51 1 1.0532 -2.1555 -3.2709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362273188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:05 Heat of formation + Delta-G solvation = -113.944976 kcal Electronic energy + Delta-G solvation = -31052.001729 eV Core-core repulsion = 26951.409924 eV Total energy + Delta-G solvation = -4100.591805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64379 -41.47035 -39.68999 -38.02205 -36.70008 -35.82243 -34.70757 -34.35288 -31.53986 -30.13451 -28.91870 -28.35853 -28.27751 -27.36789 -26.04220 -24.18000 -23.26037 -22.60498 -21.40343 -20.54362 -20.06408 -19.37856 -18.50875 -17.91643 -17.58094 -17.33288 -17.17164 -16.37522 -16.16335 -15.98385 -15.67159 -15.29451 -15.01506 -14.87644 -14.75359 -14.45514 -14.23183 -14.07542 -13.82567 -13.49673 -13.33521 -13.24346 -13.08714 -13.02864 -12.94268 -12.88446 -12.85812 -12.81327 -12.63187 -12.45006 -12.31761 -12.29006 -12.13529 -12.07410 -11.61118 -11.40044 -11.23417 -11.14759 -11.10759 -10.66895 -10.50715 -9.88376 -9.77646 -8.19058 -6.36400 0.95946 1.43537 1.44578 1.56696 1.66801 1.72763 2.32174 2.55037 2.82895 2.98130 3.11539 3.29361 3.53157 3.72867 3.75931 3.80626 3.88451 3.95481 4.12263 4.31463 4.40022 4.46646 4.53768 4.58140 4.62752 4.67892 4.70365 4.71727 4.77401 4.81299 4.85371 4.86790 4.89116 4.92862 5.00089 5.06040 5.10139 5.13233 5.19012 5.28951 5.34978 5.40074 5.41075 5.44675 5.59190 5.64927 5.86768 6.07137 6.31541 6.71424 6.92636 7.17948 7.30504 7.50481 8.87555 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002770 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.121317 B =10105.156782 C =10830.228210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H 0.001 0.999 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.701 5.701 13 C 0.525 3.475 14 O -0.593 6.593 15 C -0.131 4.131 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.089 4.089 19 H 0.122 0.878 20 C 0.114 3.886 21 N -0.598 5.598 22 C 0.666 3.334 23 O -0.588 6.588 24 O -0.363 6.363 25 C 0.123 3.877 26 C -0.182 4.182 27 C -0.134 4.134 28 C -0.177 4.177 29 C 0.157 3.843 30 H 0.008 0.992 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -8.884 -24.618 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.019 0.981 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.349 5.349 13 C 0.311 3.689 14 O -0.474 6.474 15 C -0.135 4.135 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.109 4.109 19 H 0.140 0.860 20 C -0.008 4.008 21 N -0.339 5.339 22 C 0.422 3.578 23 O -0.479 6.479 24 O -0.278 6.278 25 C 0.087 3.913 26 C -0.240 4.240 27 C -0.191 4.191 28 C -0.234 4.234 29 C 0.035 3.965 30 H 0.027 0.973 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.085 0.915 50 H 0.120 0.880 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.995 -8.368 -24.480 25.947 hybrid contribution -0.280 -0.293 1.572 1.624 sum 1.716 -8.661 -22.907 24.550 Atomic orbital electron populations 1.21905 0.98699 0.99173 0.99438 1.18330 0.90765 0.92026 0.81985 0.98086 1.21564 1.32500 1.13510 0.90717 0.90802 1.25807 0.94864 0.95578 1.02356 1.70056 1.37051 1.23965 1.24562 0.85291 0.78075 0.78572 0.78371 1.18278 1.20818 1.20607 1.46296 1.64681 1.14110 1.09804 1.20480 0.76937 0.86700 0.84755 1.90628 1.52755 1.18156 1.85860 1.22994 0.99304 0.97264 0.93912 1.22873 0.89226 1.04178 0.97832 1.22762 0.96365 1.00078 0.95340 1.23515 0.95535 1.00846 0.90971 0.85990 1.21841 0.96856 0.81425 1.00636 1.46872 1.50582 1.15650 1.20802 1.17518 0.77840 0.82315 0.80164 1.90903 1.63996 1.21240 1.71805 1.86326 1.63312 1.47340 1.30791 1.22480 0.88944 0.87834 0.92067 1.22497 0.97476 1.02636 1.01343 1.21878 1.02342 1.02322 0.92554 1.22456 1.00896 0.97005 1.03072 1.21326 0.96022 0.96293 0.82820 0.97292 0.94506 0.91336 0.92544 0.76245 0.88329 0.89341 0.88035 0.88901 0.87644 0.92449 0.92553 0.88733 0.92325 0.90767 0.87769 0.91602 0.92097 0.88967 0.91478 0.87973 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.31 16 2 C 0.27 14.27 2.56 44.25 0.11 14.38 16 3 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 4 C -0.54 -28.95 8.73 25.60 0.22 -28.73 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 8 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.70 -29.38 5.00 -446.10 -2.23 -31.61 16 13 C 0.52 20.71 6.97 87.66 0.61 21.32 16 14 O -0.59 -28.60 16.12 -3.04 -0.05 -28.65 16 15 C -0.13 -3.55 1.30 -51.70 -0.07 -3.62 16 16 C -0.10 -2.07 7.21 31.11 0.22 -1.84 16 17 C -0.11 -1.72 7.28 31.04 0.23 -1.49 16 18 C -0.09 -2.00 4.44 -9.66 -0.04 -2.04 16 19 H 0.12 2.95 7.95 -2.39 -0.02 2.93 16 20 C 0.11 2.60 6.37 86.56 0.55 3.15 16 21 N -0.60 -15.71 3.14 -948.38 -2.98 -18.70 16 22 C 0.67 18.83 7.91 129.79 1.03 19.86 16 23 O -0.59 -19.10 12.19 19.81 0.24 -18.85 16 24 O -0.36 -8.82 9.45 -55.49 -0.52 -9.34 16 25 C 0.12 2.32 1.13 -10.79 -0.01 2.31 16 26 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 27 C -0.13 -1.60 8.85 71.98 0.64 -0.97 16 28 C -0.18 -3.08 8.37 71.98 0.60 -2.48 16 29 C 0.16 4.17 5.72 86.61 0.50 4.66 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 33 H 0.27 14.45 8.31 -92.71 -0.77 13.67 16 34 H 0.40 14.52 8.54 -92.71 -0.79 13.73 16 35 H 0.10 1.61 7.97 -2.39 -0.02 1.59 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.38 7.70 -2.39 -0.02 1.36 16 39 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 48 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.10 2.29 7.72 -2.39 -0.02 2.27 16 51 H 0.05 1.71 7.84 -2.39 -0.02 1.69 16 Total: -1.00 -71.77 402.85 3.16 -68.61 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.13 Total: 30.77 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.31 Total: 16.31 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -4.97 Total: -103.05 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.33 Total: -56.84 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.77 3.16 -68.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362273188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.335 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds