Wall clock time and date at job start Tue Mar 31 2020 21:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47419 * 2 1 4 4 O 1.42904 * 109.46878 * 240.00655 * 2 1 3 5 5 C 1.52997 * 109.47807 * 120.00153 * 2 1 3 6 6 H 1.08998 * 109.47147 * 300.11045 * 5 2 1 7 7 N 1.46503 * 109.46623 * 60.10595 * 5 2 1 8 8 C 1.34774 * 120.00495 * 275.00295 * 7 5 2 9 9 O 1.21285 * 119.99870 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00551 * 180.02562 * 8 7 5 11 11 C 1.55245 * 110.57706 * 294.87309 * 10 8 7 12 12 C 1.54895 * 102.58774 * 203.33907 * 11 10 8 13 13 C 1.54266 * 104.31056 * 37.93053 * 12 11 10 14 14 C 1.53876 * 106.60197 * 336.32456 * 13 12 11 15 15 C 1.50699 * 109.47568 * 180.10599 * 5 2 1 16 16 O 1.21280 * 119.99917 * 264.30107 * 15 5 2 17 17 N 1.34774 * 119.99530 * 84.29960 * 15 5 2 18 18 C 1.46499 * 119.99640 * 184.95168 * 17 15 5 19 19 C 1.53004 * 109.47067 * 175.68267 * 18 17 15 20 20 C 1.50697 * 115.54693 * 64.37824 * 19 18 17 21 21 H 1.07994 * 120.00215 * 267.82358 * 20 19 18 22 22 C 1.37880 * 119.99881 * 87.82897 * 20 19 18 23 23 N 1.31519 * 119.99791 * 179.67802 * 22 20 19 24 24 Si 1.86799 * 120.00419 * 359.67772 * 22 20 19 25 25 H 1.48502 * 109.46633 * 89.89713 * 24 22 20 26 26 H 1.48497 * 109.47470 * 209.89941 * 24 22 20 27 27 H 1.48502 * 109.47021 * 329.90342 * 24 22 20 28 28 C 1.52993 * 117.49989 * 278.70564 * 19 18 17 29 29 C 1.53003 * 117.49774 * 210.04653 * 19 18 17 30 30 H 1.09007 * 109.46594 * 299.99187 * 1 2 3 31 31 H 1.08993 * 109.47784 * 59.99273 * 1 2 3 32 32 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 33 33 H 0.96698 * 113.99959 * 59.99371 * 4 2 1 34 34 H 0.97006 * 120.00302 * 95.00534 * 7 5 2 35 35 H 1.09001 * 110.43912 * 57.45186 * 10 8 7 36 36 H 1.08996 * 110.89697 * 85.04651 * 11 10 8 37 37 H 1.09003 * 110.76390 * 321.56489 * 11 10 8 38 38 H 1.08998 * 110.48193 * 279.18818 * 12 11 10 39 39 H 1.08994 * 110.48405 * 156.67477 * 12 11 10 40 40 H 1.09000 * 110.03178 * 95.61249 * 13 12 11 41 41 H 1.09004 * 110.02875 * 216.99400 * 13 12 11 42 42 H 1.08998 * 110.03400 * 119.28920 * 14 13 12 43 43 H 1.09001 * 110.03001 * 240.67106 * 14 13 12 44 44 H 0.96993 * 120.00100 * 4.95750 * 17 15 5 45 45 H 1.09007 * 109.47603 * 295.68522 * 18 17 15 46 46 H 1.09004 * 109.47154 * 55.68676 * 18 17 15 47 47 H 0.96997 * 120.00079 * 179.97438 * 23 22 20 48 48 H 1.09005 * 117.49855 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49666 * 145.01937 * 28 19 18 50 50 H 1.09005 * 117.49276 * 214.97965 * 29 19 18 51 51 H 1.08996 * 117.50172 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7212 1.2491 6 1 1.6753 -0.2086 2.1392 7 7 1.5539 -2.1032 1.2478 8 6 0.3320 -2.3883 1.7398 9 8 -0.3650 -1.5007 2.1842 10 6 -0.1680 -3.8099 1.7389 11 6 -0.3506 -4.3231 0.2852 12 6 -1.3859 -5.4624 0.4570 13 6 -2.3575 -4.9356 1.5332 14 6 -1.5832 -3.8850 2.3482 15 6 3.5471 -0.7189 1.2504 16 8 4.1553 -1.6750 0.8181 17 7 4.2189 0.3456 1.7320 18 6 5.6798 0.3952 1.6344 19 6 6.1800 1.7451 2.1526 20 6 5.9299 2.0133 3.6142 21 1 5.0320 2.5278 3.9229 22 6 6.8475 1.6019 4.5575 23 7 6.6323 1.8416 5.8326 24 14 8.3964 0.7040 4.0245 25 1 9.4754 1.6905 3.7637 26 1 8.8250 -0.2255 5.1004 27 1 8.1203 -0.0666 2.7854 28 6 6.1176 2.9365 1.1948 29 6 7.4672 2.3032 1.5420 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 1.7208 -0.2700 -1.9980 34 1 2.1114 -2.8133 0.8927 35 1 0.5183 -4.4551 2.2874 36 1 0.5879 -4.7105 -0.1112 37 1 -0.7462 -3.5353 -0.3559 38 1 -0.8962 -6.3744 0.7986 39 1 -1.9144 -5.6419 -0.4791 40 1 -3.2252 -4.4760 1.0601 41 1 -2.6750 -5.7524 2.1816 42 1 -2.0751 -2.9154 2.2706 43 1 -1.5250 -4.1913 3.3927 44 1 3.7351 1.0788 2.1432 45 1 6.1114 -0.4066 2.2336 46 1 5.9788 0.2722 0.5934 47 1 7.2776 1.5518 6.4963 48 1 5.7197 2.7588 0.1957 49 1 5.8959 3.9145 1.6220 50 1 8.1328 2.8647 2.1975 51 1 7.9578 1.7085 0.7715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363114226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:01 Heat of formation + Delta-G solvation = -113.405907 kcal Electronic energy + Delta-G solvation = -30772.679983 eV Core-core repulsion = 26672.111553 eV Total energy + Delta-G solvation = -4100.568429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69232 -39.29337 -37.73681 -37.03668 -36.82738 -34.33221 -33.57566 -32.17028 -31.27611 -29.45773 -28.91952 -28.02802 -26.22401 -24.97302 -22.63895 -21.84585 -21.44506 -20.68582 -20.06997 -19.72027 -19.22601 -17.87195 -17.59759 -16.76222 -16.25780 -16.11552 -15.73542 -15.49795 -15.13555 -15.02596 -14.68811 -14.25524 -14.06906 -13.88089 -13.70164 -13.59971 -13.22358 -12.85190 -12.57443 -12.48210 -12.33861 -12.15951 -12.10641 -11.88548 -11.52679 -11.41051 -11.34878 -11.29121 -11.20420 -10.99520 -10.85053 -10.64864 -10.54709 -10.23752 -10.20977 -9.78948 -9.75758 -9.53237 -9.23413 -9.03728 -8.71480 -8.60836 -8.38523 -6.19656 -4.25106 2.56000 2.82373 3.05669 3.25344 3.36005 3.40383 3.68065 4.09691 4.25010 4.33438 4.36103 4.50731 4.72008 4.82476 4.92175 4.99182 5.09057 5.11347 5.14734 5.20129 5.24767 5.27848 5.32338 5.39708 5.41543 5.60453 5.63092 5.67821 5.68696 5.80877 5.83517 5.92866 5.96969 6.01728 6.05033 6.13110 6.18640 6.20314 6.34083 6.37946 6.46159 6.65803 6.92564 7.00265 7.04472 7.50725 7.54214 7.63263 8.01022 8.20237 8.36338 8.59980 8.80122 9.43079 10.91502 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002833 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.434158 B = 9882.650464 C =10495.476998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 H 0.068 0.932 4 O -0.554 6.554 5 C 0.136 3.864 6 H 0.120 0.880 7 N -0.699 5.699 8 C 0.522 3.478 9 O -0.540 6.540 10 C -0.114 4.114 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.112 4.112 15 C 0.510 3.490 16 O -0.542 6.542 17 N -0.697 5.697 18 C 0.158 3.842 19 C -0.016 4.016 20 C -0.494 4.494 21 H 0.079 0.921 22 C 0.080 3.920 23 N -0.894 5.894 24 Si 0.880 3.120 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.258 1.258 28 C -0.178 4.178 29 C -0.193 4.193 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.375 0.625 34 H 0.412 0.588 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.406 0.594 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.266 0.734 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 -9.510 -12.840 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.038 3.962 3 H 0.086 0.914 4 O -0.359 6.359 5 C 0.026 3.974 6 H 0.138 0.862 7 N -0.352 5.352 8 C 0.309 3.691 9 O -0.417 6.417 10 C -0.135 4.135 11 C -0.150 4.150 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.150 4.150 15 C 0.294 3.706 16 O -0.420 6.420 17 N -0.347 5.347 18 C 0.034 3.966 19 C -0.017 4.017 20 C -0.531 4.531 21 H 0.097 0.903 22 C -0.123 4.123 23 N -0.530 5.530 24 Si 0.708 3.292 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.182 1.182 28 C -0.215 4.215 29 C -0.231 4.231 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.221 0.779 34 H 0.249 0.751 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.241 0.759 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.902 -9.953 -12.173 21.664 hybrid contribution 0.840 0.036 -0.422 0.941 sum -14.062 -9.917 -12.595 21.324 Atomic orbital electron populations 1.22535 0.94956 1.03293 1.02449 1.22088 0.93870 0.94940 0.85347 0.91423 1.86628 1.76779 1.57096 1.15376 1.20903 0.92372 0.85091 0.98997 0.86241 1.45620 1.17799 1.08888 1.62923 1.20496 0.80853 0.91143 0.76608 1.90685 1.56093 1.48367 1.46572 1.22223 0.99083 0.93298 0.98906 1.22540 0.99895 0.98248 0.94330 1.22355 0.96793 0.98000 0.98984 1.22150 0.98350 0.98343 0.97375 1.22069 0.93134 1.00675 0.99074 1.20178 0.88741 0.83352 0.78326 1.90642 1.69575 1.34345 1.47449 1.45822 1.08684 1.21114 1.59058 1.21164 0.78273 0.98659 0.98485 1.19613 0.97318 0.89674 0.95116 1.20188 1.08052 1.38774 0.86060 0.90314 1.24979 0.98051 0.94668 0.94598 1.69884 1.36437 1.46100 1.00569 0.86846 0.83534 0.80102 0.78730 1.20367 1.22065 1.18203 1.22847 1.00818 0.98957 0.98876 1.22955 0.91566 1.05247 1.03310 0.90479 0.92922 0.91686 0.77868 0.75069 0.88126 0.90654 0.90962 0.91373 0.91472 0.91767 0.91773 0.89695 0.91467 0.75929 0.91794 0.93508 0.92421 0.90911 0.89361 0.89106 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.06 37.16 0.30 -1.62 16 2 C 0.10 1.17 3.38 -26.73 -0.09 1.08 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 O -0.55 -6.72 12.81 -35.23 -0.45 -7.17 16 5 C 0.14 1.92 2.49 -69.08 -0.17 1.75 16 6 H 0.12 1.70 7.58 -51.93 -0.39 1.30 16 7 N -0.70 -9.21 4.79 -54.93 -0.26 -9.47 16 8 C 0.52 6.60 5.50 -10.99 -0.06 6.54 16 9 O -0.54 -8.06 12.55 5.55 0.07 -7.99 16 10 C -0.11 -1.11 3.25 -89.92 -0.29 -1.40 16 11 C -0.11 -0.92 6.34 -24.54 -0.16 -1.08 16 12 C -0.12 -0.86 6.82 -25.07 -0.17 -1.03 16 13 C -0.12 -0.93 6.80 -25.61 -0.17 -1.10 16 14 C -0.11 -1.04 6.18 -25.61 -0.16 -1.20 16 15 C 0.51 8.90 6.69 -10.99 -0.07 8.82 16 16 O -0.54 -10.99 16.00 5.56 0.09 -10.90 16 17 N -0.70 -12.62 5.47 -60.29 -0.33 -12.95 16 18 C 0.16 3.24 5.17 -4.04 -0.02 3.22 16 19 C -0.02 -0.34 0.85 -155.66 -0.13 -0.48 16 20 C -0.49 -12.75 9.16 -34.44 -0.32 -13.06 16 21 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 23 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 24 Si 0.88 21.20 24.77 -169.99 -4.21 16.99 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.26 -5.96 5.87 56.52 0.33 -5.63 16 28 C -0.18 -3.32 9.96 -26.70 -0.27 -3.58 16 29 C -0.19 -3.88 7.53 -26.69 -0.20 -4.09 16 30 H 0.08 0.92 7.54 -51.93 -0.39 0.53 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.79 5.77 -51.93 -0.30 0.49 16 33 H 0.37 2.93 9.08 45.56 0.41 3.35 16 34 H 0.41 5.46 7.78 -40.82 -0.32 5.15 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.94 6.85 -51.93 -0.36 0.58 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.41 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.06 1.47 6.85 -51.92 -0.36 1.11 16 46 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 50 H 0.09 1.92 7.12 -51.93 -0.37 1.55 16 51 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -31.91 401.19 -8.31 -40.22 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.95 Total: 15.79 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.08 Total: -5.12 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.18 Total: -47.86 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.29 Total: -26.06 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.21 Total: 16.99 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.91 -8.31 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363114226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.185 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds