Wall clock time and date at job start Tue Mar 31 2020 21:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47419 * 2 1 4 4 O 1.42904 * 109.46878 * 240.00655 * 2 1 3 5 5 C 1.52997 * 109.47807 * 120.00153 * 2 1 3 6 6 H 1.08998 * 109.47147 * 300.11045 * 5 2 1 7 7 N 1.46503 * 109.46623 * 60.10595 * 5 2 1 8 8 C 1.34774 * 120.00495 * 275.00295 * 7 5 2 9 9 O 1.21285 * 119.99870 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00551 * 180.02562 * 8 7 5 11 11 C 1.55245 * 110.57706 * 294.87309 * 10 8 7 12 12 C 1.54895 * 102.58774 * 203.33907 * 11 10 8 13 13 C 1.54266 * 104.31056 * 37.93053 * 12 11 10 14 14 C 1.53876 * 106.60197 * 336.32456 * 13 12 11 15 15 C 1.50699 * 109.47568 * 180.10599 * 5 2 1 16 16 O 1.21280 * 119.99917 * 264.30107 * 15 5 2 17 17 N 1.34774 * 119.99530 * 84.29960 * 15 5 2 18 18 C 1.46499 * 119.99640 * 184.95168 * 17 15 5 19 19 C 1.53004 * 109.47067 * 175.68267 * 18 17 15 20 20 C 1.50697 * 115.54693 * 64.37824 * 19 18 17 21 21 H 1.07994 * 120.00215 * 267.82358 * 20 19 18 22 22 C 1.37880 * 119.99881 * 87.82897 * 20 19 18 23 23 N 1.31519 * 119.99791 * 179.67802 * 22 20 19 24 24 Si 1.86799 * 120.00419 * 359.67772 * 22 20 19 25 25 H 1.48502 * 109.46633 * 89.89713 * 24 22 20 26 26 H 1.48497 * 109.47470 * 209.89941 * 24 22 20 27 27 H 1.48502 * 109.47021 * 329.90342 * 24 22 20 28 28 C 1.52993 * 117.49989 * 278.70564 * 19 18 17 29 29 C 1.53003 * 117.49774 * 210.04653 * 19 18 17 30 30 H 1.09007 * 109.46594 * 299.99187 * 1 2 3 31 31 H 1.08993 * 109.47784 * 59.99273 * 1 2 3 32 32 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 33 33 H 0.96698 * 113.99959 * 59.99371 * 4 2 1 34 34 H 0.97006 * 120.00302 * 95.00534 * 7 5 2 35 35 H 1.09001 * 110.43912 * 57.45186 * 10 8 7 36 36 H 1.08996 * 110.89697 * 85.04651 * 11 10 8 37 37 H 1.09003 * 110.76390 * 321.56489 * 11 10 8 38 38 H 1.08998 * 110.48193 * 279.18818 * 12 11 10 39 39 H 1.08994 * 110.48405 * 156.67477 * 12 11 10 40 40 H 1.09000 * 110.03178 * 95.61249 * 13 12 11 41 41 H 1.09004 * 110.02875 * 216.99400 * 13 12 11 42 42 H 1.08998 * 110.03400 * 119.28920 * 14 13 12 43 43 H 1.09001 * 110.03001 * 240.67106 * 14 13 12 44 44 H 0.96993 * 120.00100 * 4.95750 * 17 15 5 45 45 H 1.09007 * 109.47603 * 295.68522 * 18 17 15 46 46 H 1.09004 * 109.47154 * 55.68676 * 18 17 15 47 47 H 0.96997 * 120.00079 * 179.97438 * 23 22 20 48 48 H 1.09005 * 117.49855 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49666 * 145.01937 * 28 19 18 50 50 H 1.09005 * 117.49276 * 214.97965 * 29 19 18 51 51 H 1.08996 * 117.50172 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0401 -0.7212 1.2491 6 1 1.6753 -0.2086 2.1392 7 7 1.5539 -2.1032 1.2478 8 6 0.3320 -2.3883 1.7398 9 8 -0.3650 -1.5007 2.1842 10 6 -0.1680 -3.8099 1.7389 11 6 -0.3506 -4.3231 0.2852 12 6 -1.3859 -5.4624 0.4570 13 6 -2.3575 -4.9356 1.5332 14 6 -1.5832 -3.8850 2.3482 15 6 3.5471 -0.7189 1.2504 16 8 4.1553 -1.6750 0.8181 17 7 4.2189 0.3456 1.7320 18 6 5.6798 0.3952 1.6344 19 6 6.1800 1.7451 2.1526 20 6 5.9299 2.0133 3.6142 21 1 5.0320 2.5278 3.9229 22 6 6.8475 1.6019 4.5575 23 7 6.6323 1.8416 5.8326 24 14 8.3964 0.7040 4.0245 25 1 9.4754 1.6905 3.7637 26 1 8.8250 -0.2255 5.1004 27 1 8.1203 -0.0666 2.7854 28 6 6.1176 2.9365 1.1948 29 6 7.4672 2.3032 1.5420 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 1.7208 -0.2700 -1.9980 34 1 2.1114 -2.8133 0.8927 35 1 0.5183 -4.4551 2.2874 36 1 0.5879 -4.7105 -0.1112 37 1 -0.7462 -3.5353 -0.3559 38 1 -0.8962 -6.3744 0.7986 39 1 -1.9144 -5.6419 -0.4791 40 1 -3.2252 -4.4760 1.0601 41 1 -2.6750 -5.7524 2.1816 42 1 -2.0751 -2.9154 2.2706 43 1 -1.5250 -4.1913 3.3927 44 1 3.7351 1.0788 2.1432 45 1 6.1114 -0.4066 2.2336 46 1 5.9788 0.2722 0.5934 47 1 7.2776 1.5518 6.4963 48 1 5.7197 2.7588 0.1957 49 1 5.8959 3.9145 1.6220 50 1 8.1328 2.8647 2.1975 51 1 7.9578 1.7085 0.7715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363114226.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:00 Heat of formation + Delta-G solvation = -137.962063 kcal Electronic energy + Delta-G solvation = -30773.744817 eV Core-core repulsion = 26672.111553 eV Total energy + Delta-G solvation = -4101.633264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79149 -40.53786 -38.96224 -38.32372 -37.75922 -35.42359 -35.09085 -34.22661 -32.23917 -30.27405 -29.61179 -29.23439 -27.92510 -26.60976 -23.52601 -23.38527 -22.52875 -21.43362 -21.30188 -21.02505 -20.56817 -18.98763 -18.71165 -18.24441 -17.53243 -17.29275 -16.94216 -16.76183 -16.53687 -16.14127 -15.86959 -15.65723 -15.22401 -14.95975 -14.84099 -14.73202 -14.41120 -14.26839 -14.23672 -13.92583 -13.57358 -13.24358 -13.10637 -13.01006 -12.82749 -12.67936 -12.29734 -12.20254 -12.17386 -12.05575 -11.98535 -11.97323 -11.67156 -11.59587 -11.28546 -11.26153 -10.99656 -10.90156 -10.77638 -10.68456 -10.38307 -10.09063 -9.95260 -8.31039 -6.38046 1.32953 1.38955 1.45008 1.49150 1.62566 1.85235 2.35232 2.41202 3.04307 3.17222 3.21367 3.50841 3.60230 3.66818 3.79291 3.85728 4.00900 4.15954 4.18596 4.24244 4.35289 4.35861 4.40824 4.47278 4.51547 4.54027 4.60033 4.62129 4.80174 4.80449 4.83679 4.86676 4.92041 4.96853 5.09195 5.11131 5.18564 5.26292 5.28415 5.29253 5.31774 5.41714 5.46544 5.49389 5.51075 5.68786 6.26922 6.48131 6.56717 6.71867 6.84737 7.16439 7.18563 7.33103 8.83519 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002833 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.434158 B = 9882.650464 C =10495.476998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 H 0.080 0.920 4 O -0.569 6.569 5 C 0.137 3.863 6 H 0.115 0.885 7 N -0.699 5.699 8 C 0.521 3.479 9 O -0.566 6.566 10 C -0.113 4.113 11 C -0.108 4.108 12 C -0.119 4.119 13 C -0.121 4.121 14 C -0.112 4.112 15 C 0.513 3.487 16 O -0.570 6.570 17 N -0.698 5.698 18 C 0.167 3.833 19 C -0.040 4.040 20 C -0.481 4.481 21 H 0.046 0.954 22 C 0.025 3.975 23 N -0.944 5.944 24 Si 0.931 3.069 25 H -0.266 1.266 26 H -0.304 1.304 27 H -0.241 1.241 28 C -0.150 4.150 29 C -0.193 4.193 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.394 0.606 34 H 0.413 0.587 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.410 0.590 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.264 0.736 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 -10.344 -15.605 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.097 0.903 4 O -0.377 6.377 5 C 0.028 3.972 6 H 0.133 0.867 7 N -0.351 5.351 8 C 0.309 3.691 9 O -0.445 6.445 10 C -0.134 4.134 11 C -0.146 4.146 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.150 4.150 15 C 0.298 3.702 16 O -0.449 6.449 17 N -0.347 5.347 18 C 0.043 3.957 19 C -0.041 4.041 20 C -0.519 4.519 21 H 0.064 0.936 22 C -0.173 4.173 23 N -0.584 5.584 24 Si 0.757 3.243 25 H -0.191 1.191 26 H -0.231 1.231 27 H -0.164 1.164 28 C -0.187 4.187 29 C -0.231 4.231 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.244 0.756 34 H 0.250 0.750 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.246 0.754 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.122 0.878 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.204 -10.773 -14.982 23.910 hybrid contribution 0.848 0.352 0.433 1.015 sum -14.357 -10.421 -14.549 22.943 Atomic orbital electron populations 1.22418 0.94142 1.02639 1.03005 1.21999 0.94241 0.94885 0.84431 0.90253 1.86583 1.77059 1.57734 1.16318 1.20897 0.89876 0.86106 1.00360 0.86700 1.45653 1.17997 1.08457 1.63023 1.21016 0.80275 0.92135 0.75656 1.90674 1.56671 1.49464 1.47679 1.22305 0.99319 0.91413 1.00392 1.22529 1.00687 0.98484 0.92901 1.22355 0.96277 0.97673 0.99342 1.22138 0.98244 0.98025 0.97464 1.22062 0.93020 1.00337 0.99588 1.20661 0.89973 0.82414 0.77146 1.90622 1.70512 1.35201 1.48609 1.45806 1.07957 1.21682 1.59289 1.20892 0.79441 0.96824 0.98508 1.19436 0.99887 0.91569 0.93211 1.20383 1.06232 1.36608 0.88654 0.93586 1.25733 1.01170 0.95858 0.94520 1.70020 1.37847 1.48646 1.01860 0.86017 0.80492 0.79227 0.78604 1.19129 1.23145 1.16429 1.22878 0.99249 0.97325 0.99272 1.23024 0.91489 1.05165 1.03386 0.91745 0.90460 0.92927 0.75613 0.75033 0.87112 0.89995 0.91728 0.90394 0.90337 0.91572 0.90609 0.91766 0.91436 0.75405 0.94616 0.92087 0.92678 0.87775 0.89602 0.90368 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.06 71.98 0.58 -2.80 16 2 C 0.10 2.34 3.38 30.59 0.10 2.44 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 O -0.57 -12.58 12.81 -148.98 -1.91 -14.48 16 5 C 0.14 3.80 2.49 44.24 0.11 3.91 16 6 H 0.12 3.29 7.58 -2.39 -0.02 3.27 16 7 N -0.70 -18.12 4.79 -446.10 -2.14 -20.26 16 8 C 0.52 13.07 5.50 87.66 0.48 13.55 16 9 O -0.57 -17.10 12.55 -3.05 -0.04 -17.14 16 10 C -0.11 -2.12 3.25 -10.34 -0.03 -2.15 16 11 C -0.11 -1.62 6.34 32.01 0.20 -1.41 16 12 C -0.12 -1.39 6.82 31.67 0.22 -1.17 16 13 C -0.12 -1.60 6.80 31.32 0.21 -1.38 16 14 C -0.11 -2.03 6.18 31.32 0.19 -1.84 16 15 C 0.51 17.51 6.69 87.66 0.59 18.09 16 16 O -0.57 -22.65 16.00 -3.03 -0.05 -22.70 16 17 N -0.70 -24.71 5.47 -463.05 -2.53 -27.25 16 18 C 0.17 6.65 5.17 86.38 0.45 7.10 16 19 C -0.04 -1.66 0.85 -52.93 -0.05 -1.70 16 20 C -0.48 -25.14 9.16 25.60 0.23 -24.91 16 21 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 22 C 0.03 1.41 5.47 84.65 0.46 1.87 16 23 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16 24 Si 0.93 43.72 24.77 68.60 1.70 45.41 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.24 -10.57 5.87 99.48 0.58 -9.98 16 28 C -0.15 -5.16 9.96 30.62 0.30 -4.85 16 29 C -0.19 -7.22 7.53 30.62 0.23 -6.99 16 30 H 0.06 1.50 7.54 -2.38 -0.02 1.48 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.22 5.77 -2.39 -0.01 1.21 16 33 H 0.39 5.09 9.08 -74.06 -0.67 4.42 16 34 H 0.41 10.71 7.78 -92.70 -0.72 9.99 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.06 1.44 6.85 -2.39 -0.02 1.42 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.41 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.04 1.61 6.85 -2.38 -0.02 1.60 16 46 H 0.06 2.26 8.10 -2.38 -0.02 2.24 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 48 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 49 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 50 H 0.08 3.14 7.12 -2.38 -0.02 3.12 16 51 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -69.93 401.19 -1.71 -71.64 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -1.33 Total: 43.94 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.29 Total: -2.23 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.37 Total: -104.44 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -1.99 Total: -54.33 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.70 Total: 45.41 kcal Total: -69.93 -1.71 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363114226.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.323 kcal (2) G-P(sol) polarization free energy of solvation -69.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds