Wall clock time and date at job start Tue Mar 31 2020 21:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46534 * 2 1 4 4 O 1.42904 * 109.47194 * 119.99960 * 2 1 3 5 5 C 1.52996 * 109.47450 * 240.00406 * 2 1 3 6 6 H 1.09005 * 109.46679 * 305.68481 * 5 2 1 7 7 N 1.46494 * 109.47177 * 185.68524 * 5 2 1 8 8 C 1.34774 * 120.00399 * 84.99925 * 7 5 2 9 9 O 1.21282 * 119.99902 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00187 * 179.97438 * 8 7 5 11 11 C 1.54263 * 110.03194 * 297.90463 * 10 8 7 12 12 C 1.54962 * 104.16093 * 217.13423 * 11 10 8 13 13 C 1.54895 * 102.77607 * 37.89006 * 12 11 10 14 14 C 1.53880 * 110.03233 * 180.68946 * 10 8 7 15 15 C 1.50700 * 109.47326 * 65.68071 * 5 2 1 16 16 O 1.21274 * 120.00127 * 100.24815 * 15 5 2 17 17 N 1.34783 * 120.00045 * 280.52475 * 15 5 2 18 18 C 1.46493 * 119.99998 * 185.16710 * 17 15 5 19 19 C 1.53004 * 109.46997 * 184.71373 * 18 17 15 20 20 C 1.50700 * 115.54894 * 305.97072 * 19 18 17 21 21 H 1.08005 * 119.99630 * 144.60678 * 20 19 18 22 22 C 1.37874 * 120.00297 * 324.61274 * 20 19 18 23 23 N 1.31523 * 119.99784 * 2.04545 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 182.04269 * 22 20 19 25 25 H 1.48502 * 109.46870 * 59.99852 * 24 22 20 26 26 H 1.48498 * 109.47237 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47026 * 300.00197 * 24 22 20 28 28 C 1.53001 * 117.49784 * 160.30351 * 19 18 17 29 29 C 1.53001 * 117.49993 * 91.64575 * 19 18 17 30 30 H 1.09002 * 109.46887 * 175.00730 * 1 2 3 31 31 H 1.09000 * 109.47326 * 295.00456 * 1 2 3 32 32 H 1.08997 * 109.47073 * 55.01043 * 1 2 3 33 33 H 0.96702 * 113.99708 * 180.02562 * 4 2 1 34 34 H 0.97002 * 119.99869 * 264.99520 * 7 5 2 35 35 H 1.08994 * 110.01568 * 59.30055 * 10 8 7 36 36 H 1.08998 * 110.48933 * 335.78488 * 11 10 8 37 37 H 1.09005 * 110.48098 * 98.42884 * 11 10 8 38 38 H 1.09004 * 110.72569 * 279.57776 * 12 11 10 39 39 H 1.08996 * 110.92766 * 156.29574 * 12 11 10 40 40 H 1.08998 * 110.48504 * 203.40314 * 13 12 11 41 41 H 1.08997 * 110.59364 * 80.81567 * 13 12 11 42 42 H 1.09000 * 110.02988 * 238.57093 * 14 10 8 43 43 H 1.09007 * 110.03054 * 0.02562 * 14 10 8 44 44 H 0.97005 * 119.99933 * 5.17133 * 17 15 5 45 45 H 1.08999 * 109.47497 * 304.71076 * 18 17 15 46 46 H 1.08996 * 109.47261 * 64.71086 * 18 17 15 47 47 H 0.96997 * 119.99520 * 185.00876 * 23 22 20 48 48 H 1.08999 * 117.49771 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49715 * 145.01545 * 28 19 18 50 50 H 1.08999 * 117.49730 * 214.98062 * 29 19 18 51 51 H 1.09004 * 117.49699 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7211 -1.2492 6 1 1.5960 -1.7152 -1.3016 7 7 3.4986 -0.8407 -1.1827 8 6 4.0609 -1.8690 -0.5172 9 8 3.3593 -2.6952 0.0270 10 6 5.5613 -1.9923 -0.4494 11 6 6.1417 -2.1693 -1.8676 12 6 7.3118 -3.1671 -1.6767 13 6 6.7550 -4.1490 -0.6158 14 6 5.9513 -3.2503 0.3465 15 6 1.6559 0.0659 -2.4757 16 8 2.4722 0.7802 -3.0181 17 7 0.4036 -0.0198 -2.9665 18 6 0.0608 0.6544 -4.2211 19 6 -1.4372 0.4988 -4.4909 20 6 -1.9553 -0.9163 -4.4836 21 1 -2.9429 -1.1278 -4.1008 22 6 -1.1688 -1.9411 -4.9655 23 7 0.0489 -1.6895 -5.3943 24 14 -1.8325 -3.6866 -5.0093 25 1 -3.0460 -3.7334 -5.8640 26 1 -0.7991 -4.5953 -5.5675 27 1 -2.1803 -4.1186 -3.6318 28 6 -2.0853 1.4834 -5.4664 29 6 -2.3671 1.5944 -3.9659 30 1 -0.3633 -1.0238 -0.0894 31 1 -0.3634 0.4344 0.9313 32 1 -0.3633 0.5893 -0.8419 33 1 2.9704 -0.7115 1.2331 34 1 4.0598 -0.1798 -1.6178 35 1 5.9875 -1.1061 0.0207 36 1 5.3903 -2.5865 -2.5380 37 1 6.5097 -1.2174 -2.2507 38 1 8.1980 -2.6552 -1.3016 39 1 7.5340 -3.6893 -2.6072 40 1 7.5707 -4.6413 -0.0864 41 1 6.1031 -4.8877 -1.0819 42 1 6.5676 -2.9745 1.2022 43 1 5.0553 -3.7718 0.6832 44 1 -0.2708 -0.5279 -2.4890 45 1 0.3080 1.7132 -4.1439 46 1 0.6258 0.2081 -5.0395 47 1 0.5757 -2.3957 -5.8001 48 1 -1.4444 2.2417 -5.9161 49 1 -2.8867 1.1077 -6.1025 50 1 -3.3539 1.2917 -3.6155 51 1 -1.9118 2.4259 -3.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363114233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:04 Heat of formation + Delta-G solvation = -113.766326 kcal Electronic energy + Delta-G solvation = -31372.352779 eV Core-core repulsion = 27271.768721 eV Total energy + Delta-G solvation = -4100.584058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63030 -39.17763 -37.55368 -36.75825 -36.55388 -34.12771 -33.37146 -32.28927 -31.33478 -29.52522 -28.79113 -27.19359 -25.84507 -25.09325 -22.21339 -21.51078 -21.25944 -20.83453 -19.95975 -19.51154 -19.22298 -17.86490 -17.56123 -16.80942 -16.29411 -15.91166 -15.65201 -15.00890 -14.96614 -14.81725 -14.55710 -14.21022 -13.95023 -13.57236 -13.47765 -13.28501 -13.16877 -12.73960 -12.40872 -12.10327 -11.90575 -11.85959 -11.76640 -11.50929 -11.48800 -11.27969 -11.26401 -11.22178 -11.11063 -10.93245 -10.84039 -10.65667 -10.57721 -10.33338 -10.21019 -9.83503 -9.70507 -9.39814 -9.09010 -8.95241 -8.82197 -8.36295 -7.99637 -6.10373 -4.28739 2.59479 2.96965 3.19827 3.24427 3.27586 3.29075 3.89332 4.24077 4.30934 4.40407 4.43808 4.59918 4.85126 4.93780 5.03471 5.09597 5.17637 5.27162 5.29669 5.37229 5.40420 5.44649 5.45568 5.50519 5.69849 5.72333 5.77300 5.90543 5.92944 5.94210 6.00855 6.06209 6.15195 6.20617 6.22433 6.31052 6.43020 6.45159 6.54516 6.62436 6.81637 6.99785 7.18855 7.40002 7.49701 7.52745 7.66765 7.85973 8.21526 8.22355 8.37463 8.73024 8.91031 9.35441 10.80260 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003608 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.100594 B = 7758.824742 C = 8559.625431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.103 3.897 3 H 0.059 0.941 4 O -0.547 6.547 5 C 0.092 3.908 6 H 0.114 0.886 7 N -0.712 5.712 8 C 0.511 3.489 9 O -0.523 6.523 10 C -0.111 4.111 11 C -0.117 4.117 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.119 4.119 15 C 0.507 3.493 16 O -0.562 6.562 17 N -0.671 5.671 18 C 0.163 3.837 19 C 0.035 3.965 20 C -0.498 4.498 21 H 0.062 0.938 22 C 0.075 3.925 23 N -0.871 5.871 24 Si 0.892 3.108 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.274 1.274 28 C -0.197 4.197 29 C -0.211 4.211 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.368 0.632 34 H 0.410 0.590 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.403 0.597 45 H 0.026 0.974 46 H 0.114 0.886 47 H 0.264 0.736 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 0.938 9.446 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.076 0.924 4 O -0.352 6.352 5 C -0.017 4.017 6 H 0.132 0.868 7 N -0.367 5.367 8 C 0.297 3.703 9 O -0.399 6.399 10 C -0.133 4.133 11 C -0.155 4.155 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.156 4.156 15 C 0.290 3.710 16 O -0.442 6.442 17 N -0.318 5.318 18 C 0.041 3.959 19 C 0.035 3.965 20 C -0.535 4.535 21 H 0.080 0.920 22 C -0.130 4.130 23 N -0.507 5.507 24 Si 0.720 3.280 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.236 4.236 29 C -0.249 4.249 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.215 0.785 34 H 0.247 0.753 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.239 0.761 45 H 0.044 0.956 46 H 0.132 0.868 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.122 0.647 9.501 14.642 hybrid contribution 0.077 -0.712 -0.470 0.857 sum 11.199 -0.065 9.030 14.387 Atomic orbital electron populations 1.21943 0.92059 1.03937 1.03468 1.22009 0.95915 0.94225 0.83649 0.92353 1.86565 1.26220 1.80096 1.42311 1.21716 0.82458 1.02470 0.95090 0.86803 1.45815 1.06457 1.28822 1.55573 1.20728 0.90890 0.80598 0.78097 1.90745 1.63671 1.40346 1.45102 1.21949 0.91475 1.01173 0.98669 1.22391 0.98105 1.00343 0.94673 1.22504 0.97488 0.96856 0.99209 1.22366 0.99202 0.97871 0.96800 1.22172 1.01447 0.94533 0.97497 1.19977 0.83409 0.82641 0.84999 1.90608 1.50526 1.41159 1.61953 1.45811 1.09933 1.51229 1.24869 1.21161 0.95803 0.92533 0.86446 1.19212 0.89542 0.90526 0.97265 1.20511 1.01186 0.89201 1.42597 0.91987 1.24990 0.94320 0.99001 0.94643 1.69846 1.08586 1.33330 1.38949 0.86639 0.78727 0.83941 0.78725 1.20128 1.21184 1.19925 1.22938 1.04413 1.04622 0.91602 1.22967 1.01815 1.03230 0.96865 0.91045 0.91162 0.89900 0.78465 0.75284 0.88406 0.90847 0.90681 0.91345 0.91326 0.91628 0.91484 0.91490 0.89030 0.76081 0.95619 0.86826 0.92591 0.91453 0.90166 0.90534 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.55 37.16 0.32 -1.89 16 2 C 0.10 1.51 3.39 -26.73 -0.09 1.42 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 O -0.55 -8.34 12.27 -52.79 -0.65 -8.99 16 5 C 0.09 1.50 2.33 -69.09 -0.16 1.34 16 6 H 0.11 2.08 7.58 -51.93 -0.39 1.69 16 7 N -0.71 -10.03 4.80 -54.94 -0.26 -10.29 16 8 C 0.51 6.98 5.43 -10.99 -0.06 6.92 16 9 O -0.52 -8.90 13.45 -12.00 -0.16 -9.06 16 10 C -0.11 -1.13 3.29 -90.65 -0.30 -1.43 16 11 C -0.12 -1.16 6.30 -25.03 -0.16 -1.32 16 12 C -0.12 -1.05 6.91 -24.70 -0.17 -1.22 16 13 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 14 C -0.12 -1.19 6.40 -25.61 -0.16 -1.35 16 15 C 0.51 9.67 6.71 -10.98 -0.07 9.60 16 16 O -0.56 -11.91 15.90 5.56 0.09 -11.82 16 17 N -0.67 -13.50 4.21 -60.30 -0.25 -13.75 16 18 C 0.16 3.65 4.63 -4.04 -0.02 3.63 16 19 C 0.04 0.79 2.06 -155.66 -0.32 0.47 16 20 C -0.50 -12.17 8.29 -34.44 -0.29 -12.45 16 21 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 22 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 23 N -0.87 -22.34 10.21 55.43 0.57 -21.78 16 24 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 28 C -0.20 -4.13 9.96 -26.69 -0.27 -4.40 16 29 C -0.21 -4.19 9.92 -26.69 -0.26 -4.45 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.19 6.22 -51.93 -0.32 0.87 16 33 H 0.37 4.97 6.68 45.56 0.30 5.27 16 34 H 0.41 5.45 7.72 -40.82 -0.32 5.13 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.14 6.39 -51.93 -0.33 0.81 16 44 H 0.40 7.95 6.41 -40.82 -0.26 7.69 16 45 H 0.03 0.56 8.05 -51.93 -0.42 0.15 16 46 H 0.11 2.91 5.93 -51.93 -0.31 2.60 16 47 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 48 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 50 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 51 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -28.16 400.95 -9.85 -38.01 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -7.92 Total: 21.49 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.28 Total: -4.71 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.05 Total: -45.82 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.72 Total: -29.88 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.16 -9.85 -38.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363114233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.757 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds