Wall clock time and date at job start Tue Mar 31 2020 21:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46534 * 2 1 4 4 O 1.42904 * 109.47194 * 119.99960 * 2 1 3 5 5 C 1.52996 * 109.47450 * 240.00406 * 2 1 3 6 6 H 1.09005 * 109.46679 * 305.68481 * 5 2 1 7 7 N 1.46494 * 109.47177 * 185.68524 * 5 2 1 8 8 C 1.34774 * 120.00399 * 84.99925 * 7 5 2 9 9 O 1.21282 * 119.99902 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00187 * 179.97438 * 8 7 5 11 11 C 1.54263 * 110.03194 * 297.90463 * 10 8 7 12 12 C 1.54962 * 104.16093 * 217.13423 * 11 10 8 13 13 C 1.54895 * 102.77607 * 37.89006 * 12 11 10 14 14 C 1.53880 * 110.03233 * 180.68946 * 10 8 7 15 15 C 1.50700 * 109.47326 * 65.68071 * 5 2 1 16 16 O 1.21274 * 120.00127 * 100.24815 * 15 5 2 17 17 N 1.34783 * 120.00045 * 280.52475 * 15 5 2 18 18 C 1.46493 * 119.99998 * 185.16710 * 17 15 5 19 19 C 1.53004 * 109.46997 * 184.71373 * 18 17 15 20 20 C 1.50700 * 115.54894 * 305.97072 * 19 18 17 21 21 H 1.08005 * 119.99630 * 144.60678 * 20 19 18 22 22 C 1.37874 * 120.00297 * 324.61274 * 20 19 18 23 23 N 1.31523 * 119.99784 * 2.04545 * 22 20 19 24 24 Si 1.86800 * 120.00109 * 182.04269 * 22 20 19 25 25 H 1.48502 * 109.46870 * 59.99852 * 24 22 20 26 26 H 1.48498 * 109.47237 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47026 * 300.00197 * 24 22 20 28 28 C 1.53001 * 117.49784 * 160.30351 * 19 18 17 29 29 C 1.53001 * 117.49993 * 91.64575 * 19 18 17 30 30 H 1.09002 * 109.46887 * 175.00730 * 1 2 3 31 31 H 1.09000 * 109.47326 * 295.00456 * 1 2 3 32 32 H 1.08997 * 109.47073 * 55.01043 * 1 2 3 33 33 H 0.96702 * 113.99708 * 180.02562 * 4 2 1 34 34 H 0.97002 * 119.99869 * 264.99520 * 7 5 2 35 35 H 1.08994 * 110.01568 * 59.30055 * 10 8 7 36 36 H 1.08998 * 110.48933 * 335.78488 * 11 10 8 37 37 H 1.09005 * 110.48098 * 98.42884 * 11 10 8 38 38 H 1.09004 * 110.72569 * 279.57776 * 12 11 10 39 39 H 1.08996 * 110.92766 * 156.29574 * 12 11 10 40 40 H 1.08998 * 110.48504 * 203.40314 * 13 12 11 41 41 H 1.08997 * 110.59364 * 80.81567 * 13 12 11 42 42 H 1.09000 * 110.02988 * 238.57093 * 14 10 8 43 43 H 1.09007 * 110.03054 * 0.02562 * 14 10 8 44 44 H 0.97005 * 119.99933 * 5.17133 * 17 15 5 45 45 H 1.08999 * 109.47497 * 304.71076 * 18 17 15 46 46 H 1.08996 * 109.47261 * 64.71086 * 18 17 15 47 47 H 0.96997 * 119.99520 * 185.00876 * 23 22 20 48 48 H 1.08999 * 117.49771 * 0.02562 * 28 19 18 49 49 H 1.09000 * 117.49715 * 145.01545 * 28 19 18 50 50 H 1.08999 * 117.49730 * 214.98062 * 29 19 18 51 51 H 1.09004 * 117.49699 * 359.97438 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7211 -1.2492 6 1 1.5960 -1.7152 -1.3016 7 7 3.4986 -0.8407 -1.1827 8 6 4.0609 -1.8690 -0.5172 9 8 3.3593 -2.6952 0.0270 10 6 5.5613 -1.9923 -0.4494 11 6 6.1417 -2.1693 -1.8676 12 6 7.3118 -3.1671 -1.6767 13 6 6.7550 -4.1490 -0.6158 14 6 5.9513 -3.2503 0.3465 15 6 1.6559 0.0659 -2.4757 16 8 2.4722 0.7802 -3.0181 17 7 0.4036 -0.0198 -2.9665 18 6 0.0608 0.6544 -4.2211 19 6 -1.4372 0.4988 -4.4909 20 6 -1.9553 -0.9163 -4.4836 21 1 -2.9429 -1.1278 -4.1008 22 6 -1.1688 -1.9411 -4.9655 23 7 0.0489 -1.6895 -5.3943 24 14 -1.8325 -3.6866 -5.0093 25 1 -3.0460 -3.7334 -5.8640 26 1 -0.7991 -4.5953 -5.5675 27 1 -2.1803 -4.1186 -3.6318 28 6 -2.0853 1.4834 -5.4664 29 6 -2.3671 1.5944 -3.9659 30 1 -0.3633 -1.0238 -0.0894 31 1 -0.3634 0.4344 0.9313 32 1 -0.3633 0.5893 -0.8419 33 1 2.9704 -0.7115 1.2331 34 1 4.0598 -0.1798 -1.6178 35 1 5.9875 -1.1061 0.0207 36 1 5.3903 -2.5865 -2.5380 37 1 6.5097 -1.2174 -2.2507 38 1 8.1980 -2.6552 -1.3016 39 1 7.5340 -3.6893 -2.6072 40 1 7.5707 -4.6413 -0.0864 41 1 6.1031 -4.8877 -1.0819 42 1 6.5676 -2.9745 1.2022 43 1 5.0553 -3.7718 0.6832 44 1 -0.2708 -0.5279 -2.4890 45 1 0.3080 1.7132 -4.1439 46 1 0.6258 0.2081 -5.0395 47 1 0.5757 -2.3957 -5.8001 48 1 -1.4444 2.2417 -5.9161 49 1 -2.8867 1.1077 -6.1025 50 1 -3.3539 1.2917 -3.6155 51 1 -1.9118 2.4259 -3.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363114233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:03 Heat of formation + Delta-G solvation = -131.135107 kcal Electronic energy + Delta-G solvation = -31373.105946 eV Core-core repulsion = 27271.768721 eV Total energy + Delta-G solvation = -4101.337225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85913 -40.53682 -38.81389 -38.28088 -37.67151 -35.37928 -34.97992 -34.16592 -32.59061 -30.42477 -29.56280 -28.57253 -27.62821 -26.68992 -23.28365 -22.99886 -22.64242 -21.58949 -21.35923 -21.07386 -20.56183 -19.08824 -18.75917 -18.32172 -17.61665 -17.29826 -16.75761 -16.67164 -16.34535 -16.11487 -15.84500 -15.61017 -15.28834 -14.96183 -14.71811 -14.45315 -14.31488 -14.19843 -13.89125 -13.51018 -13.36693 -13.24282 -13.02459 -12.93739 -12.70940 -12.65630 -12.53384 -12.32566 -12.24967 -12.04021 -12.03116 -11.95914 -11.69285 -11.55152 -11.41758 -11.40298 -11.04161 -10.85673 -10.83414 -10.68054 -10.23177 -10.06250 -9.69488 -7.99966 -6.22611 1.39989 1.42409 1.44725 1.48491 1.63162 1.90368 2.38001 2.46233 3.01815 3.23028 3.46637 3.59701 3.61474 3.71443 3.75423 3.84101 3.88536 4.19103 4.25314 4.27374 4.41881 4.46395 4.52920 4.54190 4.55987 4.67035 4.74668 4.78107 4.78648 4.81490 4.89154 4.96412 4.98337 5.06946 5.10990 5.15233 5.20936 5.22657 5.24310 5.31080 5.43417 5.46810 5.52733 5.59935 5.76252 5.96072 6.35675 6.39015 6.54457 6.68768 6.86980 7.13439 7.31195 7.42617 8.87067 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.003608 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.100594 B = 7758.824742 C = 8559.625431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 H 0.072 0.928 4 O -0.554 6.554 5 C 0.102 3.898 6 H 0.091 0.909 7 N -0.708 5.708 8 C 0.510 3.490 9 O -0.559 6.559 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.126 4.126 14 C -0.118 4.118 15 C 0.508 3.492 16 O -0.582 6.582 17 N -0.671 5.671 18 C 0.176 3.824 19 C 0.007 3.993 20 C -0.503 4.503 21 H 0.058 0.942 22 C 0.040 3.960 23 N -0.890 5.890 24 Si 0.938 3.062 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.271 1.271 28 C -0.198 4.198 29 C -0.185 4.185 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.375 0.625 34 H 0.416 0.584 35 H 0.131 0.869 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.405 0.595 45 H 0.028 0.972 46 H 0.080 0.920 47 H 0.256 0.744 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 1.840 10.706 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.090 0.910 4 O -0.360 6.360 5 C -0.008 4.008 6 H 0.109 0.891 7 N -0.363 5.363 8 C 0.299 3.701 9 O -0.437 6.437 10 C -0.125 4.125 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.164 4.164 14 C -0.156 4.156 15 C 0.293 3.707 16 O -0.464 6.464 17 N -0.318 5.318 18 C 0.052 3.948 19 C 0.007 3.993 20 C -0.540 4.540 21 H 0.077 0.923 22 C -0.161 4.161 23 N -0.527 5.527 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.220 1.220 27 H -0.196 1.196 28 C -0.237 4.237 29 C -0.223 4.223 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.224 0.776 34 H 0.254 0.746 35 H 0.149 0.851 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.241 0.759 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.052 1.555 10.766 16.235 hybrid contribution -0.229 -0.982 -0.880 1.339 sum 11.823 0.573 9.886 15.422 Atomic orbital electron populations 1.21936 0.91682 1.03478 1.04181 1.21993 0.96223 0.94391 0.82561 0.91022 1.86552 1.27032 1.80271 1.42163 1.21518 0.83889 1.00776 0.94575 0.89093 1.45831 1.05470 1.29277 1.55715 1.21407 0.92342 0.79482 0.76895 1.90734 1.64893 1.41464 1.46628 1.22051 0.88495 1.02747 0.99236 1.22410 0.97976 1.01450 0.93851 1.22506 0.97517 0.96288 0.99122 1.22378 0.99356 0.97652 0.96968 1.22178 1.00727 0.94264 0.98439 1.20376 0.82715 0.82230 0.85399 1.90589 1.50911 1.42154 1.62783 1.45754 1.10484 1.51233 1.24303 1.20817 0.95430 0.92287 0.86232 1.19241 0.89954 0.90450 0.99695 1.20713 1.00915 0.90421 1.41966 0.92341 1.25477 0.94519 1.01371 0.94774 1.70010 1.09300 1.33465 1.39969 0.85916 0.77931 0.81029 0.78624 1.19885 1.22013 1.19597 1.22954 1.04149 1.04141 0.92408 1.22964 1.01287 1.02024 0.95979 0.91940 0.89520 0.90204 0.77622 0.74597 0.85118 0.93835 0.89085 0.89045 0.91255 0.89735 0.93485 0.89095 0.91879 0.75915 0.95430 0.90254 0.93369 0.90442 0.90593 0.89839 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 8.55 71.98 0.62 -3.63 16 2 C 0.11 3.11 3.39 30.59 0.10 3.22 16 3 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 4 O -0.55 -16.36 12.27 -132.19 -1.62 -17.98 16 5 C 0.10 3.34 2.33 44.25 0.10 3.45 16 6 H 0.09 3.44 7.58 -2.38 -0.02 3.42 16 7 N -0.71 -19.74 4.80 -446.11 -2.14 -21.88 16 8 C 0.51 13.81 5.43 87.66 0.48 14.28 16 9 O -0.56 -19.36 13.45 13.75 0.19 -19.17 16 10 C -0.10 -1.95 3.29 -10.81 -0.04 -1.99 16 11 C -0.12 -2.21 6.30 31.69 0.20 -2.01 16 12 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 13 C -0.13 -2.13 6.83 31.67 0.22 -1.92 16 14 C -0.12 -2.20 6.40 31.32 0.20 -2.00 16 15 C 0.51 19.51 6.71 87.66 0.59 20.10 16 16 O -0.58 -24.71 15.90 -3.01 -0.05 -24.76 16 17 N -0.67 -27.18 4.21 -463.07 -1.95 -29.13 16 18 C 0.18 7.90 4.63 86.38 0.40 8.30 16 19 C 0.01 0.32 2.06 -52.93 -0.11 0.21 16 20 C -0.50 -24.51 8.29 25.60 0.21 -24.29 16 21 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 22 C 0.04 2.01 5.29 84.65 0.45 2.46 16 23 N -0.89 -46.66 10.21 21.45 0.22 -46.44 16 24 Si 0.94 41.12 29.54 68.60 2.03 43.14 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 C -0.20 -8.06 9.96 30.62 0.30 -7.75 16 29 C -0.19 -6.97 9.92 30.62 0.30 -6.67 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.23 6.22 -2.39 -0.01 2.21 16 33 H 0.38 9.71 6.68 -74.06 -0.49 9.22 16 34 H 0.42 10.72 7.72 -92.71 -0.72 10.00 16 35 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.06 7.85 -2.39 -0.02 1.04 16 37 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.06 1.57 6.39 -2.38 -0.02 1.56 16 44 H 0.40 16.12 6.41 -92.70 -0.59 15.53 16 45 H 0.03 1.21 8.05 -2.39 -0.02 1.19 16 46 H 0.08 4.16 5.93 -2.39 -0.01 4.15 16 47 H 0.26 13.41 8.32 -92.71 -0.77 12.63 16 48 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 49 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 50 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 51 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -60.84 400.95 0.07 -60.77 By element: Atomic # 1 Polarization: 56.08 SS G_CDS: -0.85 Total: 55.22 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.25 Total: 0.23 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -3.87 Total: -97.45 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -1.48 Total: -61.91 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -60.84 0.07 -60.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363114233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.369 kcal (2) G-P(sol) polarization free energy of solvation -60.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds