Wall clock time and date at job start Tue Mar 31 2020 21:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46531 * 2 1 4 4 C 1.50702 * 109.47094 * 119.99736 * 2 1 3 5 5 H 1.07995 * 119.99663 * 120.00617 * 4 2 1 6 6 C 1.37874 * 120.00040 * 300.00050 * 4 2 1 7 7 N 1.31520 * 120.00009 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00013 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47285 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47518 * 120.00548 * 8 6 4 11 11 H 1.48510 * 109.47378 * 240.00518 * 8 6 4 12 12 C 1.50697 * 109.47589 * 240.00227 * 2 1 3 13 13 O 1.21284 * 120.00032 * 239.99816 * 12 2 1 14 14 N 1.34777 * 119.99818 * 59.99340 * 12 2 1 15 15 C 1.47802 * 135.01469 * 0.03485 * 14 12 2 16 16 C 1.54655 * 85.79330 * 153.78613 * 15 14 12 17 17 H 1.09001 * 115.01920 * 139.91366 * 16 15 14 18 18 C 1.53018 * 110.83689 * 270.22822 * 16 15 14 19 19 C 1.53100 * 109.44534 * 143.89264 * 18 16 15 20 20 N 1.46624 * 108.00702 * 301.02057 * 19 18 16 21 21 C 1.34777 * 119.89054 * 237.30091 * 20 19 18 22 22 O 1.21507 * 120.00243 * 180.02562 * 21 20 19 23 23 O 1.34644 * 119.99827 * 0.02562 * 21 20 19 24 24 C 1.45196 * 116.99750 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47120 * 60.00078 * 24 23 21 26 26 C 1.52998 * 109.47070 * 179.97438 * 24 23 21 27 27 C 1.53002 * 109.47463 * 300.00089 * 24 23 21 28 28 C 1.45674 * 120.21942 * 57.58202 * 20 19 18 29 29 C 1.46817 * 135.00717 * 180.02562 * 14 12 2 30 30 H 1.08998 * 110.91461 * 94.56833 * 29 14 12 31 31 H 1.08994 * 109.47329 * 60.00736 * 1 2 3 32 32 H 1.09002 * 109.46531 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47244 * 299.99652 * 1 2 3 34 34 H 0.97007 * 119.99866 * 179.97438 * 7 6 4 35 35 H 1.08998 * 113.82298 * 39.56367 * 15 14 12 36 36 H 1.09001 * 113.81817 * 267.99865 * 15 14 12 37 37 H 1.09005 * 109.47336 * 23.90329 * 18 16 15 38 38 H 1.08993 * 109.47330 * 263.88630 * 18 16 15 39 39 H 1.08999 * 109.75224 * 181.39748 * 19 18 16 40 40 H 1.08995 * 109.79881 * 60.67633 * 19 18 16 41 41 H 1.09004 * 109.47306 * 59.99657 * 25 24 23 42 42 H 1.09003 * 109.47378 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47255 * 299.99726 * 25 24 23 44 44 H 1.08999 * 109.47084 * 60.00195 * 26 24 23 45 45 H 1.09003 * 109.46954 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47592 * 300.00297 * 26 24 23 47 47 H 1.09005 * 109.46853 * 59.99673 * 27 24 23 48 48 H 1.08994 * 109.47198 * 179.97438 * 27 24 23 49 49 H 1.08999 * 109.46961 * 299.99970 * 27 24 23 50 50 H 1.09005 * 108.71527 * 81.49250 * 28 20 19 51 51 H 1.09000 * 108.71585 * 199.51191 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0079 9 1 3.1485 -2.2855 3.6038 10 1 3.1472 -0.1855 4.8162 11 1 1.1678 -1.5866 4.8165 12 6 2.0325 -0.7103 -1.2304 13 8 2.7298 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 0.9067 0.8824 -2.9668 16 6 1.8010 0.7968 -4.2256 17 1 1.2797 0.9398 -5.1721 18 6 3.0403 1.6815 -4.0741 19 6 4.2386 0.9981 -4.7382 20 7 4.4366 -0.3014 -4.0888 21 6 5.6211 -0.5921 -3.5151 22 8 5.7875 -1.6686 -2.9768 23 8 6.6199 0.3105 -3.5386 24 6 7.8675 -0.0703 -2.9007 25 6 8.4273 -1.3209 -3.5814 26 6 8.8754 1.0736 -3.0283 27 6 7.6145 -0.3652 -1.4208 28 6 3.3594 -1.2818 -4.0669 29 6 2.0000 -0.6651 -3.8319 30 1 1.2049 -1.2988 -4.2248 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7081 1.1610 3.4844 35 1 1.0335 1.8038 -2.3984 36 1 -0.1385 0.6347 -3.1517 37 1 3.2501 1.8347 -3.0154 38 1 2.8601 2.6442 -4.5521 39 1 5.1299 1.6128 -4.6116 40 1 4.0391 0.8529 -5.7998 41 1 8.6076 -1.1109 -4.6357 42 1 9.3641 -1.6066 -3.1029 43 1 7.7094 -2.1362 -3.4909 44 1 8.4768 1.9648 -2.5436 45 1 9.8118 0.7879 -2.5490 46 1 9.0556 1.2833 -4.0826 47 1 6.8965 -1.1804 -1.3304 48 1 8.5509 -0.6515 -0.9421 49 1 7.2156 0.5258 -0.9359 50 1 3.3476 -1.8098 -5.0204 51 1 3.5583 -2.0024 -3.2736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363448877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:02 Heat of formation + Delta-G solvation = -77.261151 kcal Electronic energy + Delta-G solvation = -32215.355992 eV Core-core repulsion = 28116.354917 eV Total energy + Delta-G solvation = -4099.001075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12999 -40.18147 -37.73084 -36.94073 -35.34670 -33.84716 -33.65742 -31.81686 -30.77754 -29.00079 -27.48557 -27.41014 -27.27130 -25.12372 -24.14590 -23.52281 -22.17515 -21.59480 -19.92191 -19.24550 -18.09424 -17.54876 -16.52758 -16.21150 -16.14342 -15.82023 -15.61114 -15.17177 -14.95662 -14.51044 -14.28262 -13.97312 -13.81663 -13.59385 -13.43997 -13.09137 -12.97141 -12.61557 -12.54300 -12.21507 -12.14742 -12.02201 -11.88710 -11.79530 -11.58454 -11.53919 -11.30481 -11.20334 -11.00113 -10.96580 -10.88005 -10.74991 -10.59417 -10.33634 -10.25074 -10.21239 -9.91072 -9.77681 -8.91045 -8.66509 -8.47127 -8.23716 -8.02076 -5.99711 -4.02030 2.24574 3.07794 3.34537 3.38402 3.42246 3.53461 3.78796 3.90275 4.27289 4.49690 4.69050 4.74783 4.77915 4.89189 4.93715 5.02919 5.21320 5.24133 5.32145 5.36218 5.42752 5.47972 5.49617 5.52575 5.59311 5.66032 5.67146 5.77607 5.78691 5.82020 5.84406 5.92803 5.99639 6.01029 6.18254 6.29722 6.32795 6.51340 6.55546 6.63002 6.66493 6.74656 6.90855 7.00803 7.49775 7.53450 7.79680 8.06410 8.25294 8.53777 8.55989 9.07839 9.32518 9.63361 11.07970 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.004527 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.307663 B = 6183.445895 C = 8033.710698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.038 3.962 3 H 0.047 0.953 4 C -0.497 4.497 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.542 3.458 13 O -0.533 6.533 14 N -0.647 5.647 15 C 0.110 3.890 16 C -0.119 4.119 17 H 0.094 0.906 18 C -0.118 4.118 19 C 0.114 3.886 20 N -0.585 5.585 21 C 0.651 3.349 22 O -0.553 6.553 23 O -0.366 6.366 24 C 0.137 3.863 25 C -0.182 4.182 26 C -0.139 4.139 27 C -0.185 4.185 28 C 0.122 3.878 29 C 0.123 3.877 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 4.819 -18.858 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.017 3.983 3 H 0.065 0.935 4 C -0.535 4.535 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.335 3.665 13 O -0.407 6.407 14 N -0.386 5.386 15 C -0.014 4.014 16 C -0.138 4.138 17 H 0.112 0.888 18 C -0.156 4.156 19 C -0.009 4.009 20 N -0.325 5.325 21 C 0.406 3.594 22 O -0.441 6.441 23 O -0.281 6.281 24 C 0.100 3.900 25 C -0.239 4.239 26 C -0.196 4.196 27 C -0.242 4.242 28 C -0.001 4.001 29 C 0.018 3.982 30 H 0.108 0.892 31 H 0.032 0.968 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.700 3.945 -18.197 20.149 hybrid contribution 0.057 -0.361 0.927 0.996 sum 7.756 3.584 -17.270 19.269 Atomic orbital electron populations 1.21741 0.96627 0.99634 1.00889 1.18788 0.94049 0.96545 0.88945 0.93544 1.21206 1.30630 1.12699 0.88980 0.90800 1.24932 0.95165 0.95084 0.99044 1.69890 1.37339 1.23225 1.23307 0.86428 0.78642 0.79867 0.82534 1.19530 1.21073 1.21037 1.21769 0.78357 0.83840 0.82514 1.90574 1.37950 1.26680 1.85527 1.50263 1.52832 1.31641 1.03911 1.23312 0.95231 0.91137 0.91696 1.22986 0.97290 0.94836 0.98727 0.88790 1.21753 0.93360 0.97870 1.02640 1.21576 0.99365 0.83768 0.96175 1.46313 1.10221 1.17942 1.58049 1.17919 0.81112 0.82388 0.77987 1.90934 1.81454 1.24327 1.47394 1.86237 1.22606 1.45031 1.74216 1.22028 0.79919 0.95332 0.92733 1.22505 1.02459 0.98766 1.00159 1.21840 0.97343 0.97549 1.02837 1.22519 1.03684 1.04326 0.93694 1.20902 0.84493 0.90973 1.03691 1.22146 0.96115 0.95941 0.84000 0.89187 0.96754 0.95260 0.88988 0.93116 0.89918 0.90216 0.90594 0.90141 0.88917 0.91179 0.92496 0.91325 0.89334 0.91460 0.90305 0.91745 0.88976 0.91406 0.91995 0.91487 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.85 37.16 0.33 -2.77 16 2 C 0.04 0.98 2.49 -92.92 -0.23 0.75 16 3 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.50 -14.63 8.37 -34.44 -0.29 -14.91 16 5 H 0.07 2.33 6.75 -52.49 -0.35 1.98 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.10 16 8 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 9 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 C 0.54 13.00 7.31 -10.99 -0.08 12.92 16 13 O -0.53 -14.69 14.60 5.55 0.08 -14.61 16 14 N -0.65 -11.63 3.30 -173.79 -0.57 -12.20 16 15 C 0.11 1.45 6.23 -3.00 -0.02 1.43 16 16 C -0.12 -1.26 4.39 -89.95 -0.40 -1.65 16 17 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 18 C -0.12 -1.26 5.66 -26.67 -0.15 -1.41 16 19 C 0.11 1.24 6.40 -3.92 -0.03 1.21 16 20 N -0.58 -8.72 2.98 -181.12 -0.54 -9.26 16 21 C 0.65 11.29 7.70 54.06 0.42 11.70 16 22 O -0.55 -11.33 11.27 -19.28 -0.22 -11.55 16 23 O -0.37 -5.51 8.44 -40.34 -0.34 -5.85 16 24 C 0.14 1.81 1.13 -90.62 -0.10 1.71 16 25 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 26 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 27 C -0.19 -2.80 8.37 37.16 0.31 -2.49 16 28 C 0.12 1.85 6.04 -5.44 -0.03 1.82 16 29 C 0.12 1.70 4.23 -69.41 -0.29 1.41 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.01 0.27 6.23 -51.93 -0.32 -0.05 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 36 H 0.08 0.92 8.05 -51.93 -0.42 0.51 16 37 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.99 6.83 -51.93 -0.35 0.63 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 1.75 5.88 -51.93 -0.31 1.44 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.12 2.34 5.53 -51.93 -0.29 2.05 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -35.27 391.67 -8.63 -43.90 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.53 Total: 2.94 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.02 Total: 8.33 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.49 Total: -46.57 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.48 Total: -32.00 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.27 -8.63 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363448877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.364 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds