Wall clock time and date at job start Tue Mar 31 2020 21:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46531 * 2 1 4 4 C 1.50702 * 109.47094 * 119.99736 * 2 1 3 5 5 H 1.07995 * 119.99663 * 120.00617 * 4 2 1 6 6 C 1.37874 * 120.00040 * 300.00050 * 4 2 1 7 7 N 1.31520 * 120.00009 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00013 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47285 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47518 * 120.00548 * 8 6 4 11 11 H 1.48510 * 109.47378 * 240.00518 * 8 6 4 12 12 C 1.50697 * 109.47589 * 240.00227 * 2 1 3 13 13 O 1.21284 * 120.00032 * 239.99816 * 12 2 1 14 14 N 1.34777 * 119.99818 * 59.99340 * 12 2 1 15 15 C 1.47802 * 135.01469 * 0.03485 * 14 12 2 16 16 C 1.54655 * 85.79330 * 153.78613 * 15 14 12 17 17 H 1.09001 * 115.01920 * 139.91366 * 16 15 14 18 18 C 1.53018 * 110.83689 * 270.22822 * 16 15 14 19 19 C 1.53100 * 109.44534 * 143.89264 * 18 16 15 20 20 N 1.46624 * 108.00702 * 301.02057 * 19 18 16 21 21 C 1.34777 * 119.89054 * 237.30091 * 20 19 18 22 22 O 1.21507 * 120.00243 * 180.02562 * 21 20 19 23 23 O 1.34644 * 119.99827 * 0.02562 * 21 20 19 24 24 C 1.45196 * 116.99750 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47120 * 60.00078 * 24 23 21 26 26 C 1.52998 * 109.47070 * 179.97438 * 24 23 21 27 27 C 1.53002 * 109.47463 * 300.00089 * 24 23 21 28 28 C 1.45674 * 120.21942 * 57.58202 * 20 19 18 29 29 C 1.46817 * 135.00717 * 180.02562 * 14 12 2 30 30 H 1.08998 * 110.91461 * 94.56833 * 29 14 12 31 31 H 1.08994 * 109.47329 * 60.00736 * 1 2 3 32 32 H 1.09002 * 109.46531 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47244 * 299.99652 * 1 2 3 34 34 H 0.97007 * 119.99866 * 179.97438 * 7 6 4 35 35 H 1.08998 * 113.82298 * 39.56367 * 15 14 12 36 36 H 1.09001 * 113.81817 * 267.99865 * 15 14 12 37 37 H 1.09005 * 109.47336 * 23.90329 * 18 16 15 38 38 H 1.08993 * 109.47330 * 263.88630 * 18 16 15 39 39 H 1.08999 * 109.75224 * 181.39748 * 19 18 16 40 40 H 1.08995 * 109.79881 * 60.67633 * 19 18 16 41 41 H 1.09004 * 109.47306 * 59.99657 * 25 24 23 42 42 H 1.09003 * 109.47378 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47255 * 299.99726 * 25 24 23 44 44 H 1.08999 * 109.47084 * 60.00195 * 26 24 23 45 45 H 1.09003 * 109.46954 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47592 * 300.00297 * 26 24 23 47 47 H 1.09005 * 109.46853 * 59.99673 * 27 24 23 48 48 H 1.08994 * 109.47198 * 179.97438 * 27 24 23 49 49 H 1.08999 * 109.46961 * 299.99970 * 27 24 23 50 50 H 1.09005 * 108.71527 * 81.49250 * 28 20 19 51 51 H 1.09000 * 108.71585 * 199.51191 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0079 9 1 3.1485 -2.2855 3.6038 10 1 3.1472 -0.1855 4.8162 11 1 1.1678 -1.5866 4.8165 12 6 2.0325 -0.7103 -1.2304 13 8 2.7298 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4545 15 6 0.9067 0.8824 -2.9668 16 6 1.8010 0.7968 -4.2256 17 1 1.2797 0.9398 -5.1721 18 6 3.0403 1.6815 -4.0741 19 6 4.2386 0.9981 -4.7382 20 7 4.4366 -0.3014 -4.0888 21 6 5.6211 -0.5921 -3.5151 22 8 5.7875 -1.6686 -2.9768 23 8 6.6199 0.3105 -3.5386 24 6 7.8675 -0.0703 -2.9007 25 6 8.4273 -1.3209 -3.5814 26 6 8.8754 1.0736 -3.0283 27 6 7.6145 -0.3652 -1.4208 28 6 3.3594 -1.2818 -4.0669 29 6 2.0000 -0.6651 -3.8319 30 1 1.2049 -1.2988 -4.2248 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7081 1.1610 3.4844 35 1 1.0335 1.8038 -2.3984 36 1 -0.1385 0.6347 -3.1517 37 1 3.2501 1.8347 -3.0154 38 1 2.8601 2.6442 -4.5521 39 1 5.1299 1.6128 -4.6116 40 1 4.0391 0.8529 -5.7998 41 1 8.6076 -1.1109 -4.6357 42 1 9.3641 -1.6066 -3.1029 43 1 7.7094 -2.1362 -3.4909 44 1 8.4768 1.9648 -2.5436 45 1 9.8118 0.7879 -2.5490 46 1 9.0556 1.2833 -4.0826 47 1 6.8965 -1.1804 -1.3304 48 1 8.5509 -0.6515 -0.9421 49 1 7.2156 0.5258 -0.9359 50 1 3.3476 -1.8098 -5.0204 51 1 3.5583 -2.0024 -3.2736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363448877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:01 Heat of formation + Delta-G solvation = -101.307105 kcal Electronic energy + Delta-G solvation = -32216.398703 eV Core-core repulsion = 28116.354917 eV Total energy + Delta-G solvation = -4100.043786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33472 -41.44056 -39.33564 -38.25929 -36.63843 -35.81479 -34.91946 -32.97426 -32.67698 -30.43366 -28.67989 -28.43496 -28.31589 -27.27896 -25.39611 -24.67313 -23.85340 -22.70551 -21.26847 -20.48818 -19.32576 -18.74169 -18.38550 -17.81490 -17.45051 -17.28204 -17.06541 -16.70218 -16.16044 -16.10680 -15.55420 -15.35595 -15.01344 -14.82244 -14.68772 -14.53736 -14.35555 -14.27395 -13.58039 -13.44804 -13.39990 -13.18512 -13.08169 -12.99932 -12.94484 -12.89170 -12.82627 -12.61987 -12.57432 -12.51051 -12.31774 -12.26376 -12.09198 -12.02662 -11.79820 -11.51324 -11.41983 -11.08413 -11.05721 -10.61506 -10.13639 -9.79586 -9.44281 -8.21485 -6.31644 1.10333 1.31401 1.32509 1.47286 1.78555 1.95065 2.06484 2.39453 2.85717 3.06918 3.26353 3.71005 3.72068 3.75468 3.83821 3.90717 3.94639 4.15164 4.22360 4.32633 4.46550 4.50060 4.54674 4.55908 4.60867 4.65722 4.69160 4.70897 4.75246 4.78052 4.82739 4.84459 4.85298 4.91316 4.93945 5.00868 5.07887 5.14150 5.23409 5.25002 5.30833 5.41926 5.45062 5.51053 5.59006 5.67385 5.92817 6.19375 6.30195 6.72514 6.91692 7.30442 7.35760 7.55960 8.84522 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.004527 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.307663 B = 6183.445895 C = 8033.710698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.035 3.965 3 H 0.026 0.974 4 C -0.529 4.529 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.286 1.286 10 H -0.271 1.271 11 H -0.267 1.267 12 C 0.537 3.463 13 O -0.588 6.588 14 N -0.653 5.653 15 C 0.099 3.901 16 C -0.086 4.086 17 H 0.154 0.846 18 C -0.118 4.118 19 C 0.110 3.890 20 N -0.585 5.585 21 C 0.638 3.362 22 O -0.597 6.597 23 O -0.362 6.362 24 C 0.126 3.874 25 C -0.175 4.175 26 C -0.130 4.130 27 C -0.182 4.182 28 C 0.121 3.879 29 C 0.114 3.886 30 H 0.120 0.880 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.093 0.907 49 H 0.048 0.952 50 H 0.101 0.899 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 7.082 -21.965 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.014 3.986 3 H 0.044 0.956 4 C -0.568 4.568 5 H 0.056 0.944 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.212 1.212 10 H -0.196 1.196 11 H -0.192 1.192 12 C 0.329 3.671 13 O -0.467 6.467 14 N -0.390 5.390 15 C -0.022 4.022 16 C -0.105 4.105 17 H 0.172 0.828 18 C -0.156 4.156 19 C -0.011 4.011 20 N -0.326 5.326 21 C 0.393 3.607 22 O -0.488 6.488 23 O -0.277 6.277 24 C 0.090 3.910 25 C -0.232 4.232 26 C -0.187 4.187 27 C -0.239 4.239 28 C -0.002 4.002 29 C 0.011 3.989 30 H 0.138 0.862 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.063 0.937 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.119 0.881 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.118 6.297 -21.369 23.387 hybrid contribution 0.234 -1.024 1.853 2.130 sum 7.352 5.273 -19.516 21.511 Atomic orbital electron populations 1.21508 0.94778 0.99045 1.01737 1.18656 0.95454 0.94988 0.89476 0.95645 1.21271 1.31477 1.12515 0.91487 0.94391 1.25553 0.95154 0.95759 1.01202 1.69949 1.37111 1.23436 1.24269 0.85605 0.78573 0.78530 0.79552 1.21185 1.19588 1.19181 1.21238 0.78352 0.83225 0.84314 1.90548 1.40391 1.28975 1.86831 1.50246 1.52367 1.32631 1.03770 1.23773 0.96863 0.89131 0.92465 1.22965 0.96489 0.91270 0.99767 0.82812 1.21811 0.93412 1.00034 1.00316 1.21917 0.99620 0.81615 0.97945 1.46564 1.09158 1.19384 1.57466 1.18324 0.82210 0.82237 0.77924 1.90922 1.82384 1.26279 1.49202 1.86246 1.22897 1.44362 1.74146 1.22385 0.80023 0.97570 0.91026 1.22428 1.02281 0.97081 1.01409 1.21851 0.96778 0.95698 1.04345 1.22474 1.03530 1.01845 0.96089 1.20883 0.85384 0.90634 1.03252 1.22656 0.95953 0.99168 0.81132 0.86228 0.92640 0.96360 0.91186 0.92476 0.90522 0.87223 0.95125 0.85849 0.88918 0.87027 0.90754 0.89121 0.92914 0.91663 0.87990 0.89946 0.93708 0.88850 0.93319 0.88094 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.43 8.85 71.98 0.64 -4.79 16 2 C 0.04 1.93 2.49 -12.29 -0.03 1.90 16 3 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.53 -33.18 8.37 25.60 0.21 -32.97 16 5 H 0.04 2.61 6.75 -2.91 -0.02 2.59 16 6 C 0.02 1.33 5.30 84.65 0.45 1.78 16 7 N -0.91 -53.02 11.32 21.45 0.24 -52.77 16 8 Si 0.95 47.66 29.54 68.60 2.03 49.69 16 9 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.54 27.25 7.31 87.66 0.64 27.89 16 13 O -0.59 -35.35 14.60 -3.04 -0.04 -35.39 16 14 N -0.65 -23.41 3.30 -822.13 -2.71 -26.12 16 15 C 0.10 2.32 6.23 86.34 0.54 2.86 16 16 C -0.09 -1.41 4.39 -10.30 -0.05 -1.46 16 17 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 18 C -0.12 -2.11 5.66 30.63 0.17 -1.94 16 19 C 0.11 2.06 6.40 86.39 0.55 2.62 16 20 N -0.59 -17.40 2.98 -957.36 -2.85 -20.25 16 21 C 0.64 23.35 7.70 129.79 1.00 24.35 16 22 O -0.60 -26.91 11.27 19.82 0.22 -26.69 16 23 O -0.36 -11.16 8.44 -55.54 -0.47 -11.63 16 24 C 0.13 3.39 1.13 -10.79 -0.01 3.38 16 25 C -0.17 -4.34 8.37 71.98 0.60 -3.74 16 26 C -0.13 -2.28 8.85 71.98 0.64 -1.64 16 27 C -0.18 -5.92 8.37 71.98 0.60 -5.32 16 28 C 0.12 3.68 6.04 85.92 0.52 4.20 16 29 C 0.11 2.91 4.23 43.86 0.19 3.10 16 30 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 2.13 6.23 -2.39 -0.01 2.12 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 34 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 35 H 0.08 1.92 7.97 -2.39 -0.02 1.91 16 36 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 37 H 0.03 0.84 7.69 -2.38 -0.02 0.82 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.77 6.83 -2.39 -0.02 1.75 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.72 5.88 -2.38 -0.01 1.71 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.04 1.90 5.88 -2.38 -0.01 1.88 16 48 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 51 H 0.06 2.54 5.53 -2.39 -0.01 2.53 16 Total: -1.00 -89.13 391.67 4.00 -85.13 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.92 Total: 17.82 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 6.66 Total: 20.22 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.32 Total: -99.15 kcal Atomic # 8 Polarization: -73.42 SS G_CDS: -0.29 Total: -73.71 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -89.13 4.00 -85.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363448877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.177 kcal (2) G-P(sol) polarization free energy of solvation -89.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds