Wall clock time and date at job start Tue Mar 31 2020 21:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00713 * 2 1 3 5 5 H 1.07996 * 120.00254 * 119.99661 * 4 2 1 6 6 C 1.37881 * 119.99589 * 299.99368 * 4 2 1 7 7 N 1.31510 * 120.00057 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99605 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47302 * 89.99980 * 8 6 4 10 10 H 1.48501 * 109.46715 * 210.00159 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99832 * 8 6 4 12 12 C 1.50701 * 109.46714 * 240.00415 * 2 1 3 13 13 O 1.21284 * 120.00220 * 245.97818 * 12 2 1 14 14 N 1.34775 * 120.00262 * 65.97354 * 12 2 1 15 15 C 1.46922 * 120.62809 * 5.15956 * 14 12 2 16 16 C 1.53195 * 108.77640 * 126.37224 * 15 14 12 17 17 C 1.53035 * 109.31419 * 54.63010 * 16 15 14 18 18 C 1.53037 * 109.53956 * 298.63580 * 17 16 15 19 19 C 1.46932 * 120.63030 * 185.13394 * 14 12 2 20 20 H 1.08997 * 109.58144 * 113.70372 * 19 14 12 21 21 C 1.52994 * 109.58733 * 353.41880 * 19 14 12 22 22 O 1.45193 * 109.47380 * 294.53583 * 21 19 14 23 23 C 1.34638 * 117.00204 * 180.02562 * 22 21 19 24 24 O 1.21513 * 119.99844 * 359.97438 * 23 22 21 25 25 N 1.34781 * 120.00108 * 179.97438 * 23 22 21 26 26 C 1.47016 * 125.64676 * 359.68858 * 25 23 22 27 27 C 1.54322 * 107.27104 * 181.32179 * 26 25 23 28 28 C 1.55162 * 102.94096 * 22.19477 * 27 26 25 29 29 C 1.47425 * 125.64523 * 179.97438 * 25 23 22 30 30 H 1.09005 * 109.46714 * 295.04768 * 1 2 3 31 31 H 1.08999 * 109.47312 * 55.03878 * 1 2 3 32 32 H 1.08996 * 109.47505 * 175.05056 * 1 2 3 33 33 H 0.96998 * 119.99576 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.58529 * 246.15226 * 15 14 12 35 35 H 1.08992 * 109.59087 * 6.43803 * 15 14 12 36 36 H 1.08996 * 109.49697 * 174.58804 * 16 15 14 37 37 H 1.09010 * 109.49344 * 294.68181 * 16 15 14 38 38 H 1.09000 * 109.45997 * 58.66086 * 17 16 15 39 39 H 1.09008 * 109.45946 * 178.63441 * 17 16 15 40 40 H 1.09000 * 109.49994 * 301.41521 * 18 17 16 41 41 H 1.09000 * 109.50209 * 181.31474 * 18 17 16 42 42 H 1.09000 * 109.46894 * 174.53082 * 21 19 14 43 43 H 1.08999 * 109.47025 * 54.53668 * 21 19 14 44 44 H 1.08999 * 109.88203 * 300.73934 * 26 25 23 45 45 H 1.09001 * 109.88665 * 61.90663 * 26 25 23 46 46 H 1.08995 * 110.72577 * 263.83011 * 27 26 25 47 47 H 1.09003 * 110.71787 * 140.55091 * 27 26 25 48 48 H 1.09001 * 111.00116 * 206.42252 * 28 27 26 49 49 H 1.08997 * 111.03750 * 82.58485 * 28 27 26 50 50 H 1.08996 * 110.36993 * 274.44636 * 29 25 23 51 51 H 1.09002 * 110.36309 * 36.66548 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3445 -0.9493 5.1121 11 1 2.4880 -2.5657 3.7119 12 6 2.0322 -0.7103 -1.2306 13 8 2.6375 -1.7558 -1.1227 14 7 1.8088 -0.1839 -2.4510 15 6 1.1775 1.1351 -2.5930 16 6 2.0708 2.0173 -3.4709 17 6 2.3404 1.3034 -4.7973 18 6 3.0743 -0.0127 -4.5303 19 6 2.1924 -0.9180 -3.6646 20 1 1.2975 -1.1990 -4.2197 21 6 2.9723 -2.1762 -3.2780 22 8 4.2293 -1.7954 -2.6591 23 6 5.0402 -2.7926 -2.2583 24 8 4.7063 -3.9496 -2.4208 25 7 6.2223 -2.5077 -1.6768 26 6 6.7507 -1.1589 -1.4260 27 6 8.1406 -1.3248 -0.7764 28 6 8.5607 -2.7528 -1.2144 29 6 7.2020 -3.4970 -1.1923 30 1 -0.3633 0.4351 0.9311 31 1 -0.3634 0.5889 -0.8422 32 1 -0.3634 -1.0238 -0.0887 33 1 0.7092 1.1612 3.4844 34 1 0.2000 1.0237 -3.0622 35 1 1.0612 1.5924 -1.6105 36 1 1.5690 2.9656 -3.6634 37 1 3.0151 2.2024 -2.9587 38 1 1.3942 1.0966 -5.2973 39 1 2.9559 1.9395 -5.4336 40 1 4.0091 0.1914 -4.0082 41 1 3.2867 -0.5095 -5.4770 42 1 3.1717 -2.7687 -4.1709 43 1 2.3849 -2.7659 -2.5743 44 1 6.8435 -0.6163 -2.3668 45 1 6.0871 -0.6206 -0.7492 46 1 8.0692 -1.2598 0.3093 47 1 8.8382 -0.5819 -1.1633 48 1 9.2578 -3.1912 -0.5004 49 1 8.9859 -2.7450 -2.2180 50 1 6.9564 -3.8084 -0.1770 51 1 7.2297 -4.3604 -1.8570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411372573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:36 Heat of formation + Delta-G solvation = -99.490466 kcal Electronic energy + Delta-G solvation = -32459.177329 eV Core-core repulsion = 28359.212319 eV Total energy + Delta-G solvation = -4099.965010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36033 -39.56415 -37.76966 -36.80182 -35.57604 -33.90344 -32.40538 -32.08665 -31.28829 -29.98498 -28.96998 -26.91488 -25.14917 -24.46379 -23.62371 -22.72805 -21.53654 -21.19978 -20.41779 -19.86085 -18.24416 -17.79528 -16.80645 -16.29792 -16.23129 -15.93701 -15.16588 -15.10060 -14.67496 -14.53281 -14.32857 -13.79147 -13.72971 -13.59929 -13.42077 -13.27442 -12.85582 -12.81251 -12.68208 -12.27390 -12.16120 -12.00045 -11.67850 -11.36718 -11.29926 -11.27950 -11.17036 -10.98095 -10.80265 -10.78882 -10.69064 -10.62839 -10.46981 -10.30316 -10.28564 -10.01635 -9.96598 -9.80460 -8.94934 -8.47105 -8.39977 -8.10269 -7.82280 -6.01413 -4.03676 2.54446 3.33180 3.39216 3.43781 3.46688 3.61389 3.76516 4.25295 4.47734 4.57939 4.65436 4.85581 4.86432 4.90849 4.98854 5.25118 5.28570 5.31847 5.35010 5.36778 5.47645 5.59937 5.64868 5.66042 5.70177 5.80104 5.86184 5.86795 5.91658 5.94505 5.99465 6.01740 6.13433 6.15486 6.23141 6.26178 6.31537 6.44180 6.51532 6.65182 6.85913 6.93915 6.96612 7.17626 7.47530 7.78579 7.85848 8.01658 8.15551 8.42900 8.83550 9.05108 9.31042 9.61530 11.05934 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005901 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.730535 B = 4744.164691 C = 7237.409143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.048 0.952 4 C -0.494 4.494 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.525 6.525 14 N -0.621 5.621 15 C 0.111 3.889 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.129 4.129 19 C 0.148 3.852 20 H 0.084 0.916 21 C 0.096 3.904 22 O -0.338 6.338 23 C 0.680 3.320 24 O -0.583 6.583 25 N -0.608 5.608 26 C 0.108 3.892 27 C -0.132 4.132 28 C -0.133 4.133 29 C 0.126 3.874 30 H 0.094 0.906 31 H 0.017 0.983 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 2.018 -13.503 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.066 0.934 4 C -0.532 4.532 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.315 3.685 13 O -0.400 6.400 14 N -0.358 5.358 15 C -0.012 4.012 16 C -0.174 4.174 17 C -0.153 4.153 18 C -0.168 4.168 19 C 0.044 3.956 20 H 0.101 0.899 21 C 0.022 3.978 22 O -0.250 6.250 23 C 0.436 3.564 24 O -0.474 6.474 25 N -0.351 5.351 26 C -0.015 4.015 27 C -0.170 4.170 28 C -0.171 4.171 29 C 0.004 3.996 30 H 0.112 0.888 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.087 0.913 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.661 1.198 -13.402 16.002 hybrid contribution 0.120 -0.286 0.799 0.857 sum 8.781 0.912 -12.603 15.388 Atomic orbital electron populations 1.21831 0.96610 0.99055 1.01949 1.18823 0.93995 0.96550 0.89349 0.93449 1.21130 1.30575 1.12546 0.88988 0.91023 1.24917 0.95209 0.95089 0.98976 1.69859 1.37255 1.23160 1.23402 0.86513 0.78418 0.80345 0.82313 1.20774 1.21307 1.19831 1.21917 0.77162 0.85402 0.84053 1.90504 1.40183 1.24144 1.85200 1.48321 1.63054 1.19253 1.05185 1.21744 0.94710 0.83064 1.01660 1.21943 1.00984 0.98353 0.96146 1.21486 1.00225 0.96406 0.97218 1.21934 0.99757 0.95889 0.99197 1.21255 0.96113 0.91282 0.86990 0.89854 1.23076 0.82894 0.96346 0.95532 1.86190 1.30150 1.36007 1.72655 1.17328 0.79467 0.83052 0.76544 1.90915 1.74752 1.20171 1.61516 1.46879 1.17069 1.08386 1.62728 1.21950 0.94872 0.84258 1.00431 1.22650 0.95649 0.97163 1.01522 1.22798 0.96218 0.95781 1.02303 1.22126 0.86025 0.91618 0.99824 0.88781 0.96358 0.95373 0.93051 0.92356 0.88275 0.91191 0.91436 0.92127 0.92141 0.90662 0.91622 0.93345 0.87740 0.91815 0.90667 0.90244 0.90063 0.89661 0.90678 0.91304 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.68 37.16 0.32 -2.81 16 2 C 0.03 0.83 1.79 -92.92 -0.17 0.66 16 3 H 0.05 1.21 7.15 -51.93 -0.37 0.84 16 4 C -0.49 -13.95 8.37 -34.44 -0.29 -14.24 16 5 H 0.07 2.18 6.77 -52.49 -0.36 1.82 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 7 N -0.90 -25.01 11.29 55.43 0.63 -24.38 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 11.73 6.71 -10.99 -0.07 11.65 16 13 O -0.52 -13.15 9.42 -19.12 -0.18 -13.33 16 14 N -0.62 -10.91 2.97 -165.22 -0.49 -11.40 16 15 C 0.11 1.63 5.02 -3.71 -0.02 1.61 16 16 C -0.14 -1.63 6.08 -26.61 -0.16 -1.79 16 17 C -0.12 -1.24 5.88 -26.69 -0.16 -1.40 16 18 C -0.13 -1.63 5.25 -26.61 -0.14 -1.77 16 19 C 0.15 2.24 3.30 -67.60 -0.22 2.02 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.10 1.74 4.22 37.15 0.16 1.90 16 22 O -0.34 -6.66 6.79 -48.52 -0.33 -6.99 16 23 C 0.68 13.99 8.08 54.06 0.44 14.43 16 24 O -0.58 -13.49 16.38 -19.28 -0.32 -13.80 16 25 N -0.61 -10.35 3.33 -176.29 -0.59 -10.93 16 26 C 0.11 1.52 6.89 -3.07 -0.02 1.50 16 27 C -0.13 -1.35 6.95 -24.89 -0.17 -1.52 16 28 C -0.13 -1.27 7.09 -24.57 -0.17 -1.44 16 29 C 0.13 1.71 6.91 -2.52 -0.02 1.69 16 30 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 31 H 0.02 0.34 5.93 -51.93 -0.31 0.04 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.63 4.93 -51.93 -0.26 1.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.07 1.09 7.35 -51.93 -0.38 0.71 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 2.26 5.99 -52.07 -0.31 1.95 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.08 1.05 8.03 -51.93 -0.42 0.64 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -33.65 388.24 -9.85 -43.50 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.61 Total: 2.46 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -0.79 Total: 12.01 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.45 Total: -46.71 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.83 Total: -34.13 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.65 -9.85 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.990 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds