Wall clock time and date at job start Tue Mar 31 2020 21:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50700 * 109.47204 * 120.00713 * 2 1 3 5 5 H 1.07996 * 120.00254 * 119.99661 * 4 2 1 6 6 C 1.37881 * 119.99589 * 299.99368 * 4 2 1 7 7 N 1.31510 * 120.00057 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99605 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47302 * 89.99980 * 8 6 4 10 10 H 1.48501 * 109.46715 * 210.00159 * 8 6 4 11 11 H 1.48500 * 109.47029 * 329.99832 * 8 6 4 12 12 C 1.50701 * 109.46714 * 240.00415 * 2 1 3 13 13 O 1.21284 * 120.00220 * 245.97818 * 12 2 1 14 14 N 1.34775 * 120.00262 * 65.97354 * 12 2 1 15 15 C 1.46922 * 120.62809 * 5.15956 * 14 12 2 16 16 C 1.53195 * 108.77640 * 126.37224 * 15 14 12 17 17 C 1.53035 * 109.31419 * 54.63010 * 16 15 14 18 18 C 1.53037 * 109.53956 * 298.63580 * 17 16 15 19 19 C 1.46932 * 120.63030 * 185.13394 * 14 12 2 20 20 H 1.08997 * 109.58144 * 113.70372 * 19 14 12 21 21 C 1.52994 * 109.58733 * 353.41880 * 19 14 12 22 22 O 1.45193 * 109.47380 * 294.53583 * 21 19 14 23 23 C 1.34638 * 117.00204 * 180.02562 * 22 21 19 24 24 O 1.21513 * 119.99844 * 359.97438 * 23 22 21 25 25 N 1.34781 * 120.00108 * 179.97438 * 23 22 21 26 26 C 1.47016 * 125.64676 * 359.68858 * 25 23 22 27 27 C 1.54322 * 107.27104 * 181.32179 * 26 25 23 28 28 C 1.55162 * 102.94096 * 22.19477 * 27 26 25 29 29 C 1.47425 * 125.64523 * 179.97438 * 25 23 22 30 30 H 1.09005 * 109.46714 * 295.04768 * 1 2 3 31 31 H 1.08999 * 109.47312 * 55.03878 * 1 2 3 32 32 H 1.08996 * 109.47505 * 175.05056 * 1 2 3 33 33 H 0.96998 * 119.99576 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.58529 * 246.15226 * 15 14 12 35 35 H 1.08992 * 109.59087 * 6.43803 * 15 14 12 36 36 H 1.08996 * 109.49697 * 174.58804 * 16 15 14 37 37 H 1.09010 * 109.49344 * 294.68181 * 16 15 14 38 38 H 1.09000 * 109.45997 * 58.66086 * 17 16 15 39 39 H 1.09008 * 109.45946 * 178.63441 * 17 16 15 40 40 H 1.09000 * 109.49994 * 301.41521 * 18 17 16 41 41 H 1.09000 * 109.50209 * 181.31474 * 18 17 16 42 42 H 1.09000 * 109.46894 * 174.53082 * 21 19 14 43 43 H 1.08999 * 109.47025 * 54.53668 * 21 19 14 44 44 H 1.08999 * 109.88203 * 300.73934 * 26 25 23 45 45 H 1.09001 * 109.88665 * 61.90663 * 26 25 23 46 46 H 1.08995 * 110.72577 * 263.83011 * 27 26 25 47 47 H 1.09003 * 110.71787 * 140.55091 * 27 26 25 48 48 H 1.09001 * 111.00116 * 206.42252 * 28 27 26 49 49 H 1.08997 * 111.03750 * 82.58485 * 28 27 26 50 50 H 1.08996 * 110.36993 * 274.44636 * 29 25 23 51 51 H 1.09002 * 110.36309 * 36.66548 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9437 0.8301 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3445 -0.9493 5.1121 11 1 2.4880 -2.5657 3.7119 12 6 2.0322 -0.7103 -1.2306 13 8 2.6375 -1.7558 -1.1227 14 7 1.8088 -0.1839 -2.4510 15 6 1.1775 1.1351 -2.5930 16 6 2.0708 2.0173 -3.4709 17 6 2.3404 1.3034 -4.7973 18 6 3.0743 -0.0127 -4.5303 19 6 2.1924 -0.9180 -3.6646 20 1 1.2975 -1.1990 -4.2197 21 6 2.9723 -2.1762 -3.2780 22 8 4.2293 -1.7954 -2.6591 23 6 5.0402 -2.7926 -2.2583 24 8 4.7063 -3.9496 -2.4208 25 7 6.2223 -2.5077 -1.6768 26 6 6.7507 -1.1589 -1.4260 27 6 8.1406 -1.3248 -0.7764 28 6 8.5607 -2.7528 -1.2144 29 6 7.2020 -3.4970 -1.1923 30 1 -0.3633 0.4351 0.9311 31 1 -0.3634 0.5889 -0.8422 32 1 -0.3634 -1.0238 -0.0887 33 1 0.7092 1.1612 3.4844 34 1 0.2000 1.0237 -3.0622 35 1 1.0612 1.5924 -1.6105 36 1 1.5690 2.9656 -3.6634 37 1 3.0151 2.2024 -2.9587 38 1 1.3942 1.0966 -5.2973 39 1 2.9559 1.9395 -5.4336 40 1 4.0091 0.1914 -4.0082 41 1 3.2867 -0.5095 -5.4770 42 1 3.1717 -2.7687 -4.1709 43 1 2.3849 -2.7659 -2.5743 44 1 6.8435 -0.6163 -2.3668 45 1 6.0871 -0.6206 -0.7492 46 1 8.0692 -1.2598 0.3093 47 1 8.8382 -0.5819 -1.1633 48 1 9.2578 -3.1912 -0.5004 49 1 8.9859 -2.7450 -2.2180 50 1 6.9564 -3.8084 -0.1770 51 1 7.2297 -4.3604 -1.8570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411372573.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:35 Heat of formation + Delta-G solvation = -119.887438 kcal Electronic energy + Delta-G solvation = -32460.061808 eV Core-core repulsion = 28359.212319 eV Total energy + Delta-G solvation = -4100.849490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.84535 -41.00855 -39.04144 -38.24130 -37.13187 -35.87085 -33.89319 -33.37881 -32.50413 -31.77169 -30.03926 -28.21095 -27.24365 -25.80887 -24.83217 -24.34684 -22.85670 -22.16990 -21.69556 -21.25275 -19.76048 -19.14842 -18.45298 -18.07341 -17.77163 -17.39074 -16.84207 -16.51116 -16.23994 -16.09753 -15.51416 -15.06565 -14.95831 -14.91506 -14.70015 -14.45157 -14.30924 -14.20678 -14.00950 -13.79970 -13.51971 -13.40810 -13.29438 -12.98923 -12.75426 -12.67709 -12.48800 -12.30668 -12.27034 -12.23628 -12.16334 -12.03816 -11.79986 -11.66244 -11.63202 -11.57363 -11.46031 -11.34252 -11.04647 -10.52755 -9.84361 -9.75646 -9.32337 -8.16697 -6.25581 1.18342 1.33513 1.35184 1.47026 1.87202 2.01567 2.18453 2.43019 2.99511 3.12320 3.58401 3.62394 3.69932 3.82082 3.99634 4.01267 4.17669 4.21908 4.22803 4.31382 4.33172 4.37892 4.41489 4.56481 4.62344 4.70756 4.75212 4.80428 4.83656 4.86942 4.94556 4.96143 4.99406 5.00565 5.04738 5.05927 5.15469 5.21418 5.23813 5.25428 5.33595 5.45743 5.47154 5.53733 5.71975 5.78402 5.98476 6.23028 6.41187 6.65431 6.82754 7.29178 7.40542 7.62547 8.88769 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007628 B = 0.005901 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.730535 B = 4744.164691 C = 7237.409143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.034 3.966 3 H 0.035 0.965 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.287 1.287 12 C 0.518 3.482 13 O -0.561 6.561 14 N -0.613 5.613 15 C 0.103 3.897 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.146 3.854 20 H 0.115 0.885 21 C 0.095 3.905 22 O -0.341 6.341 23 C 0.665 3.335 24 O -0.622 6.622 25 N -0.611 5.611 26 C 0.103 3.897 27 C -0.122 4.122 28 C -0.113 4.113 29 C 0.111 3.889 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 3.742 -15.424 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 H 0.053 0.947 4 C -0.558 4.558 5 H 0.056 0.944 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.773 3.227 9 H -0.197 1.197 10 H -0.197 1.197 11 H -0.213 1.213 12 C 0.309 3.691 13 O -0.440 6.440 14 N -0.348 5.348 15 C -0.019 4.019 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.160 4.160 19 C 0.044 3.956 20 H 0.133 0.867 21 C 0.020 3.980 22 O -0.253 6.253 23 C 0.421 3.579 24 O -0.515 6.515 25 N -0.353 5.353 26 C -0.020 4.020 27 C -0.159 4.159 28 C -0.151 4.151 29 C -0.009 4.009 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.110 0.890 50 H 0.076 0.924 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.572 2.990 -15.342 18.329 hybrid contribution -0.193 -0.811 1.379 1.611 sum 9.379 2.179 -13.964 16.962 Atomic orbital electron populations 1.21628 0.95394 0.98609 1.02273 1.18683 0.94903 0.95478 0.89625 0.94723 1.21196 1.31110 1.12181 0.91300 0.94379 1.25485 0.95327 0.95760 1.01014 1.69925 1.37179 1.23451 1.24152 0.85736 0.78696 0.78475 0.79791 1.19731 1.19663 1.21314 1.21474 0.77391 0.84962 0.85254 1.90526 1.41822 1.25541 1.86095 1.48224 1.61973 1.20215 1.04437 1.21997 0.96579 0.81726 1.01595 1.21914 0.99634 0.99133 0.96140 1.21480 1.01388 0.95072 0.96617 1.21889 0.98223 0.96739 0.99165 1.21573 0.97426 0.90390 0.86240 0.86737 1.23115 0.82183 0.97862 0.94812 1.86193 1.30501 1.35856 1.72747 1.17769 0.80403 0.82815 0.76930 1.90858 1.75846 1.21490 1.63337 1.47236 1.16346 1.10502 1.61243 1.22132 0.96428 0.82713 1.00689 1.22672 0.93423 0.98638 1.01209 1.22797 0.93849 0.94275 1.04192 1.22450 0.87756 0.91832 0.98887 0.91134 0.92560 0.96635 0.92614 0.89544 0.90490 0.88328 0.93438 0.89942 0.89940 0.93049 0.89135 0.91636 0.91998 0.90537 0.94140 0.90448 0.86760 0.86743 0.88985 0.92410 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.68 71.98 0.62 -5.05 16 2 C 0.03 1.75 1.79 -12.29 -0.02 1.73 16 3 H 0.04 1.85 7.15 -2.39 -0.02 1.83 16 4 C -0.52 -30.88 8.37 25.60 0.21 -30.67 16 5 H 0.04 2.48 6.77 -2.91 -0.02 2.46 16 6 C 0.02 1.33 5.29 84.66 0.45 1.78 16 7 N -0.91 -51.36 11.29 21.45 0.24 -51.12 16 8 Si 0.95 46.27 29.54 68.60 2.03 48.30 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 12 C 0.52 24.30 6.71 87.66 0.59 24.89 16 13 O -0.56 -30.10 9.42 20.55 0.19 -29.90 16 14 N -0.61 -21.42 2.97 -795.04 -2.36 -23.78 16 15 C 0.10 2.82 5.02 86.36 0.43 3.26 16 16 C -0.13 -2.75 6.08 30.67 0.19 -2.56 16 17 C -0.11 -1.86 5.88 30.62 0.18 -1.68 16 18 C -0.12 -2.76 5.25 30.67 0.16 -2.60 16 19 C 0.15 4.27 3.30 44.97 0.15 4.42 16 20 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 21 C 0.09 3.55 4.22 71.98 0.30 3.85 16 22 O -0.34 -14.15 6.79 -47.63 -0.32 -14.47 16 23 C 0.66 28.99 8.08 129.79 1.05 30.04 16 24 O -0.62 -30.61 16.38 19.80 0.32 -30.28 16 25 N -0.61 -21.73 3.33 -942.07 -3.13 -24.86 16 26 C 0.10 2.95 6.89 86.73 0.60 3.55 16 27 C -0.12 -2.27 6.95 31.78 0.22 -2.05 16 28 C -0.11 -1.90 7.09 31.99 0.23 -1.67 16 29 C 0.11 3.09 6.91 86.86 0.60 3.69 16 30 H 0.07 3.65 5.95 -2.38 -0.01 3.64 16 31 H 0.06 2.14 5.93 -2.39 -0.01 2.13 16 32 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.48 4.93 -2.39 -0.01 2.47 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.05 1.43 7.35 -2.39 -0.02 1.41 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.06 2.87 5.99 -4.57 -0.03 2.84 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -80.04 388.24 3.83 -76.22 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.90 Total: 18.98 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 5.96 Total: 30.93 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -5.25 Total: -99.76 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: 0.19 Total: -74.66 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.04 3.83 -76.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372573.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.672 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds