Wall clock time and date at job start Tue Mar 31 2020 21:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46912 * 2 1 4 4 C 1.50698 * 109.47192 * 120.00257 * 2 1 3 5 5 H 1.07997 * 120.00069 * 120.27616 * 4 2 1 6 6 C 1.37878 * 119.99824 * 300.00165 * 4 2 1 7 7 N 1.31524 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47005 * 120.00027 * 8 6 4 11 11 H 1.48504 * 109.46920 * 239.99929 * 8 6 4 12 12 C 1.50699 * 109.47387 * 240.00522 * 2 1 3 13 13 O 1.21284 * 119.99846 * 243.90531 * 12 2 1 14 14 N 1.34771 * 120.00456 * 63.89779 * 12 2 1 15 15 C 1.46931 * 120.62829 * 4.03802 * 14 12 2 16 16 C 1.52763 * 109.00741 * 233.58204 * 15 14 12 17 17 C 1.53043 * 109.38424 * 305.58668 * 16 15 14 18 18 C 1.53045 * 109.53381 * 61.24098 * 17 16 15 19 19 C 1.46926 * 120.63216 * 184.31732 * 14 12 2 20 20 H 1.09001 * 109.58324 * 246.15760 * 19 14 12 21 21 C 1.52999 * 109.58694 * 6.44086 * 19 14 12 22 22 O 1.45195 * 109.47268 * 62.57062 * 21 19 14 23 23 C 1.34638 * 116.99908 * 180.02562 * 22 21 19 24 24 O 1.21513 * 119.99983 * 359.97438 * 23 22 21 25 25 N 1.34781 * 119.99797 * 179.97438 * 23 22 21 26 26 C 1.47020 * 125.64894 * 359.68799 * 25 23 22 27 27 C 1.54307 * 107.27485 * 180.96903 * 26 25 23 28 28 C 1.55150 * 102.86560 * 22.52662 * 27 26 25 29 29 C 1.47415 * 125.64600 * 179.97438 * 25 23 22 30 30 H 1.08997 * 109.47523 * 305.91548 * 1 2 3 31 31 H 1.09010 * 109.47063 * 65.91218 * 1 2 3 32 32 H 1.08996 * 109.47307 * 185.90838 * 1 2 3 33 33 H 0.96998 * 120.00227 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.58497 * 353.41850 * 15 14 12 35 35 H 1.09000 * 109.58400 * 113.84125 * 15 14 12 36 36 H 1.09000 * 109.56165 * 185.55594 * 16 15 14 37 37 H 1.08999 * 109.38764 * 65.51602 * 16 15 14 38 38 H 1.08999 * 109.46164 * 301.22102 * 17 16 15 39 39 H 1.08991 * 109.44786 * 181.25160 * 17 16 15 40 40 H 1.09006 * 109.49255 * 178.68287 * 18 17 16 41 41 H 1.08995 * 109.49886 * 58.59106 * 18 17 16 42 42 H 1.08999 * 109.46594 * 182.57207 * 21 19 14 43 43 H 1.09003 * 109.46713 * 302.56765 * 21 19 14 44 44 H 1.08999 * 109.88327 * 300.51888 * 26 25 23 45 45 H 1.09003 * 109.88014 * 61.67894 * 26 25 23 46 46 H 1.09000 * 110.92641 * 264.11180 * 27 26 25 47 47 H 1.08998 * 110.74229 * 140.85726 * 27 26 25 48 48 H 1.09003 * 111.00516 * 206.23137 * 28 27 26 49 49 H 1.09001 * 111.03877 * 82.38816 * 28 27 26 50 50 H 1.09004 * 110.36636 * 274.66811 * 29 25 23 51 51 H 1.08999 * 110.37085 * 36.99109 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6569 -1.5859 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1471 -0.1858 4.8160 11 1 1.1677 -1.5868 4.8164 12 6 2.0324 -0.7103 -1.2305 13 8 2.6701 -1.7361 -1.1207 14 7 1.7729 -0.2058 -2.4530 15 6 1.0785 1.0807 -2.6000 16 6 -0.1307 0.8917 -3.5142 17 6 0.3241 0.2680 -4.8357 18 6 0.9473 -1.1037 -4.5664 19 6 2.1737 -0.9347 -3.6641 20 1 2.9415 -0.3701 -4.1931 21 6 2.7228 -2.3094 -3.2773 22 8 1.6777 -3.0843 -2.6329 23 6 1.9999 -4.3272 -2.2277 24 8 3.1236 -4.7528 -2.4081 25 7 1.0759 -5.0992 -1.6220 26 6 -0.3126 -4.7093 -1.3364 27 6 -0.9832 -5.8976 -0.6157 28 6 0.2257 -6.6698 -0.0245 29 6 1.2920 -6.4723 -1.1310 30 1 -0.3634 0.6028 0.8322 31 1 -0.3634 0.4195 -0.9383 32 1 -0.3634 -1.0222 0.1058 33 1 0.7088 1.1613 3.4844 34 1 0.7450 1.4296 -1.6227 35 1 1.7552 1.8129 -3.0404 36 1 -0.5955 1.8582 -3.7091 37 1 -0.8511 0.2327 -3.0297 38 1 1.0625 0.9159 -5.3080 39 1 -0.5344 0.1532 -5.4972 40 1 1.2497 -1.5574 -5.5103 41 1 0.2172 -1.7442 -4.0718 42 1 3.0617 -2.8302 -4.1728 43 1 3.5599 -2.1859 -2.5901 44 1 -0.3257 -3.8286 -0.6943 45 1 -0.8377 -4.4991 -2.2681 46 1 -1.5316 -6.5216 -1.3214 47 1 -1.6417 -5.5457 0.1783 48 1 -0.0111 -7.7258 0.1056 49 1 0.5515 -6.2258 0.9162 50 1 1.1410 -7.1913 -1.9362 51 1 2.2942 -6.5729 -0.7143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411372585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:42 Heat of formation + Delta-G solvation = -97.270145 kcal Electronic energy + Delta-G solvation = -32761.873919 eV Core-core repulsion = 28662.005188 eV Total energy + Delta-G solvation = -4099.868730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37581 -39.56902 -37.75901 -36.78922 -35.59139 -33.93575 -32.39178 -32.10154 -31.28978 -29.94602 -28.93789 -26.97971 -25.13208 -24.45347 -23.58984 -22.69162 -21.45790 -21.15881 -20.53868 -19.91271 -18.15401 -17.78256 -16.63533 -16.58944 -16.07953 -15.94188 -15.36550 -15.02942 -14.54840 -14.37113 -14.29764 -14.00917 -13.72437 -13.55650 -13.43593 -13.31094 -12.93774 -12.79955 -12.52730 -12.43211 -12.11279 -11.93284 -11.52678 -11.35357 -11.30381 -11.23201 -11.11242 -10.98345 -10.90035 -10.74094 -10.67794 -10.65815 -10.45477 -10.23470 -10.19196 -10.01875 -9.99558 -9.84325 -8.92178 -8.46350 -8.42523 -8.01931 -7.87160 -6.01840 -4.03121 2.54384 3.31682 3.39500 3.43000 3.47843 3.60295 3.79252 4.27787 4.47909 4.61740 4.69634 4.85772 4.90874 4.92733 5.00146 5.25402 5.30993 5.32171 5.37231 5.39415 5.48243 5.61415 5.67273 5.71589 5.73161 5.82384 5.86264 5.90572 5.92454 5.94549 5.99379 6.04606 6.14940 6.19135 6.22975 6.27042 6.33812 6.45431 6.51387 6.68879 6.86615 6.92946 6.97285 7.17015 7.50275 7.76442 7.86027 8.02078 8.13436 8.43122 8.83027 9.05998 9.32461 9.62035 11.06298 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.006505 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.414522 B = 4303.400299 C = 6801.725758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.033 3.967 3 H 0.047 0.953 4 C -0.494 4.494 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.527 3.473 13 O -0.528 6.528 14 N -0.621 5.621 15 C 0.105 3.895 16 C -0.135 4.135 17 C -0.115 4.115 18 C -0.130 4.130 19 C 0.148 3.852 20 H 0.083 0.917 21 C 0.091 3.909 22 O -0.341 6.341 23 C 0.680 3.320 24 O -0.583 6.583 25 N -0.607 5.607 26 C 0.108 3.892 27 C -0.131 4.131 28 C -0.135 4.135 29 C 0.127 3.873 30 H 0.087 0.913 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.259 0.741 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -5.411 -12.928 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.533 4.533 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.319 3.681 13 O -0.404 6.404 14 N -0.358 5.358 15 C -0.018 4.018 16 C -0.174 4.174 17 C -0.153 4.153 18 C -0.168 4.168 19 C 0.044 3.956 20 H 0.101 0.899 21 C 0.017 3.983 22 O -0.253 6.253 23 C 0.436 3.564 24 O -0.473 6.473 25 N -0.350 5.350 26 C -0.015 4.015 27 C -0.169 4.169 28 C -0.173 4.173 29 C 0.005 3.995 30 H 0.105 0.895 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.643 -5.854 -12.846 15.203 hybrid contribution 0.248 -0.227 0.763 0.834 sum -5.395 -6.081 -12.083 14.563 Atomic orbital electron populations 1.21879 0.96490 1.00724 1.00035 1.18829 0.94093 0.96502 0.89416 0.93543 1.21166 1.30479 1.12653 0.88967 0.90941 1.24916 0.95218 0.95047 0.98966 1.69893 1.37425 1.23118 1.23275 0.86472 0.78623 0.79877 0.82746 1.19659 1.21099 1.21119 1.21891 0.77515 0.84666 0.84037 1.90480 1.39660 1.24913 1.85359 1.48312 1.60400 1.21912 1.05154 1.21750 0.93061 0.85089 1.01945 1.21863 0.98404 1.01151 0.95951 1.21484 1.00198 0.96375 0.97256 1.21939 0.98174 0.97714 0.98965 1.21257 0.96311 0.91047 0.86962 0.89909 1.23169 0.91749 0.88087 0.95339 1.86184 1.42719 1.24516 1.71896 1.17327 0.82288 0.80027 0.76783 1.90915 1.20011 1.74833 1.61523 1.46893 1.11404 1.15120 1.61567 1.21962 0.81209 0.98381 0.99984 1.22621 0.97523 0.96550 1.00161 1.22823 0.94964 1.00947 0.98565 1.22110 1.00341 0.81219 0.95784 0.89458 0.95960 0.95036 0.93149 0.87696 0.92558 0.91205 0.91253 0.92145 0.92125 0.91594 0.90724 0.93344 0.87206 0.90539 0.91845 0.90781 0.89793 0.89748 0.90082 0.91707 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.39 37.16 0.31 -2.68 16 2 C 0.03 0.80 1.80 -92.93 -0.17 0.63 16 3 H 0.05 1.19 7.57 -51.93 -0.39 0.79 16 4 C -0.49 -13.92 8.37 -34.44 -0.29 -14.21 16 5 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.95 11.39 55.43 0.63 -24.32 16 8 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.53 11.79 6.54 -10.99 -0.07 11.72 16 13 O -0.53 -13.26 9.72 -18.85 -0.18 -13.44 16 14 N -0.62 -10.89 2.98 -165.48 -0.49 -11.39 16 15 C 0.10 1.53 5.44 -3.93 -0.02 1.51 16 16 C -0.14 -1.62 5.82 -26.83 -0.16 -1.78 16 17 C -0.12 -1.24 5.89 -26.69 -0.16 -1.39 16 18 C -0.13 -1.63 5.28 -26.61 -0.14 -1.77 16 19 C 0.15 2.25 3.28 -67.60 -0.22 2.03 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.09 1.65 4.20 37.16 0.16 1.80 16 22 O -0.34 -6.75 6.88 -48.43 -0.33 -7.08 16 23 C 0.68 14.05 8.17 54.06 0.44 14.50 16 24 O -0.58 -13.49 16.39 -19.28 -0.32 -13.80 16 25 N -0.61 -10.45 3.33 -176.30 -0.59 -11.03 16 26 C 0.11 1.55 6.89 -3.07 -0.02 1.53 16 27 C -0.13 -1.39 6.95 -24.91 -0.17 -1.56 16 28 C -0.13 -1.48 7.08 -24.57 -0.17 -1.65 16 29 C 0.13 1.75 6.91 -2.52 -0.02 1.74 16 30 H 0.09 2.15 6.25 -51.93 -0.32 1.82 16 31 H 0.02 0.41 4.60 -51.92 -0.24 0.17 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.11 1.72 4.38 -51.93 -0.23 1.49 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.93 7.52 -51.93 -0.39 0.54 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 2.37 5.92 -52.20 -0.31 2.06 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -33.56 386.75 -9.79 -43.35 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.52 Total: 3.00 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -0.80 Total: 11.94 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.45 Total: -46.74 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.83 Total: -34.33 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.56 -9.79 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.920 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds