Wall clock time and date at job start Tue Mar 31 2020 21:15:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09005 * 109.46912 * 2 1
4 4 C 1.50698 * 109.47192 * 120.00257 * 2 1 3
5 5 H 1.07997 * 120.00069 * 120.27616 * 4 2 1
6 6 C 1.37878 * 119.99824 * 300.00165 * 4 2 1
7 7 N 1.31524 * 120.00125 * 359.97438 * 6 4 2
8 8 Si 1.86802 * 119.99954 * 180.02562 * 6 4 2
9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47005 * 120.00027 * 8 6 4
11 11 H 1.48504 * 109.46920 * 239.99929 * 8 6 4
12 12 C 1.50699 * 109.47387 * 240.00522 * 2 1 3
13 13 O 1.21284 * 119.99846 * 243.90531 * 12 2 1
14 14 N 1.34771 * 120.00456 * 63.89779 * 12 2 1
15 15 C 1.46931 * 120.62829 * 4.03802 * 14 12 2
16 16 C 1.52763 * 109.00741 * 233.58204 * 15 14 12
17 17 C 1.53043 * 109.38424 * 305.58668 * 16 15 14
18 18 C 1.53045 * 109.53381 * 61.24098 * 17 16 15
19 19 C 1.46926 * 120.63216 * 184.31732 * 14 12 2
20 20 H 1.09001 * 109.58324 * 246.15760 * 19 14 12
21 21 C 1.52999 * 109.58694 * 6.44086 * 19 14 12
22 22 O 1.45195 * 109.47268 * 62.57062 * 21 19 14
23 23 C 1.34638 * 116.99908 * 180.02562 * 22 21 19
24 24 O 1.21513 * 119.99983 * 359.97438 * 23 22 21
25 25 N 1.34781 * 119.99797 * 179.97438 * 23 22 21
26 26 C 1.47020 * 125.64894 * 359.68799 * 25 23 22
27 27 C 1.54307 * 107.27485 * 180.96903 * 26 25 23
28 28 C 1.55150 * 102.86560 * 22.52662 * 27 26 25
29 29 C 1.47415 * 125.64600 * 179.97438 * 25 23 22
30 30 H 1.08997 * 109.47523 * 305.91548 * 1 2 3
31 31 H 1.09010 * 109.47063 * 65.91218 * 1 2 3
32 32 H 1.08996 * 109.47307 * 185.90838 * 1 2 3
33 33 H 0.96998 * 120.00227 * 179.97438 * 7 6 4
34 34 H 1.09002 * 109.58497 * 353.41850 * 15 14 12
35 35 H 1.09000 * 109.58400 * 113.84125 * 15 14 12
36 36 H 1.09000 * 109.56165 * 185.55594 * 16 15 14
37 37 H 1.08999 * 109.38764 * 65.51602 * 16 15 14
38 38 H 1.08999 * 109.46164 * 301.22102 * 17 16 15
39 39 H 1.08991 * 109.44786 * 181.25160 * 17 16 15
40 40 H 1.09006 * 109.49255 * 178.68287 * 18 17 16
41 41 H 1.08995 * 109.49886 * 58.59106 * 18 17 16
42 42 H 1.08999 * 109.46594 * 182.57207 * 21 19 14
43 43 H 1.09003 * 109.46713 * 302.56765 * 21 19 14
44 44 H 1.08999 * 109.88327 * 300.51888 * 26 25 23
45 45 H 1.09003 * 109.88014 * 61.67894 * 26 25 23
46 46 H 1.09000 * 110.92641 * 264.11180 * 27 26 25
47 47 H 1.08998 * 110.74229 * 140.85726 * 27 26 25
48 48 H 1.09003 * 111.00516 * 206.23137 * 28 27 26
49 49 H 1.09001 * 111.03877 * 82.38816 * 28 27 26
50 50 H 1.09004 * 110.36636 * 274.66811 * 29 25 23
51 51 H 1.08999 * 110.37085 * 36.99109 * 29 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2304
5 1 2.6569 -1.5859 1.1313
6 6 1.6992 -0.2394 2.4827
7 7 0.9434 0.8302 2.6034
8 14 2.3225 -1.1197 4.0079
9 1 3.1474 -2.2863 3.6037
10 1 3.1471 -0.1858 4.8160
11 1 1.1677 -1.5868 4.8164
12 6 2.0324 -0.7103 -1.2305
13 8 2.6701 -1.7361 -1.1207
14 7 1.7729 -0.2058 -2.4530
15 6 1.0785 1.0807 -2.6000
16 6 -0.1307 0.8917 -3.5142
17 6 0.3241 0.2680 -4.8357
18 6 0.9473 -1.1037 -4.5664
19 6 2.1737 -0.9347 -3.6641
20 1 2.9415 -0.3701 -4.1931
21 6 2.7228 -2.3094 -3.2773
22 8 1.6777 -3.0843 -2.6329
23 6 1.9999 -4.3272 -2.2277
24 8 3.1236 -4.7528 -2.4081
25 7 1.0759 -5.0992 -1.6220
26 6 -0.3126 -4.7093 -1.3364
27 6 -0.9832 -5.8976 -0.6157
28 6 0.2257 -6.6698 -0.0245
29 6 1.2920 -6.4723 -1.1310
30 1 -0.3634 0.6028 0.8322
31 1 -0.3634 0.4195 -0.9383
32 1 -0.3634 -1.0222 0.1058
33 1 0.7088 1.1613 3.4844
34 1 0.7450 1.4296 -1.6227
35 1 1.7552 1.8129 -3.0404
36 1 -0.5955 1.8582 -3.7091
37 1 -0.8511 0.2327 -3.0297
38 1 1.0625 0.9159 -5.3080
39 1 -0.5344 0.1532 -5.4972
40 1 1.2497 -1.5574 -5.5103
41 1 0.2172 -1.7442 -4.0718
42 1 3.0617 -2.8302 -4.1728
43 1 3.5599 -2.1859 -2.5901
44 1 -0.3257 -3.8286 -0.6943
45 1 -0.8377 -4.4991 -2.2681
46 1 -1.5316 -6.5216 -1.3214
47 1 -1.6417 -5.5457 0.1783
48 1 -0.0111 -7.7258 0.1056
49 1 0.5515 -6.2258 0.9162
50 1 1.1410 -7.1913 -1.9362
51 1 2.2942 -6.5729 -0.7143
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001411372585.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:42
Heat of formation + Delta-G solvation = -97.270145 kcal
Electronic energy + Delta-G solvation = -32761.873919 eV
Core-core repulsion = 28662.005188 eV
Total energy + Delta-G solvation = -4099.868730 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.37581 -39.56902 -37.75901 -36.78922 -35.59139 -33.93575 -32.39178 -32.10154
-31.28978 -29.94602 -28.93789 -26.97971 -25.13208 -24.45347 -23.58984 -22.69162
-21.45790 -21.15881 -20.53868 -19.91271 -18.15401 -17.78256 -16.63533 -16.58944
-16.07953 -15.94188 -15.36550 -15.02942 -14.54840 -14.37113 -14.29764 -14.00917
-13.72437 -13.55650 -13.43593 -13.31094 -12.93774 -12.79955 -12.52730 -12.43211
-12.11279 -11.93284 -11.52678 -11.35357 -11.30381 -11.23201 -11.11242 -10.98345
-10.90035 -10.74094 -10.67794 -10.65815 -10.45477 -10.23470 -10.19196 -10.01875
-9.99558 -9.84325 -8.92178 -8.46350 -8.42523 -8.01931 -7.87160 -6.01840
-4.03121 2.54384 3.31682 3.39500 3.43000 3.47843 3.60295 3.79252
4.27787 4.47909 4.61740 4.69634 4.85772 4.90874 4.92733 5.00146
5.25402 5.30993 5.32171 5.37231 5.39415 5.48243 5.61415 5.67273
5.71589 5.73161 5.82384 5.86264 5.90572 5.92454 5.94549 5.99379
6.04606 6.14940 6.19135 6.22975 6.27042 6.33812 6.45431 6.51387
6.68879 6.86615 6.92946 6.97285 7.17015 7.50275 7.76442 7.86027
8.02078 8.13436 8.43122 8.83027 9.05998 9.32461 9.62035 11.06298
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.007335 B = 0.006505 C = 0.004116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3816.414522 B = 4303.400299 C = 6801.725758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.033 3.967
3 H 0.047 0.953
4 C -0.494 4.494
5 H 0.072 0.928
6 C 0.059 3.941
7 N -0.897 5.897
8 Si 0.895 3.105
9 H -0.272 1.272
10 H -0.285 1.285
11 H -0.285 1.285
12 C 0.527 3.473
13 O -0.528 6.528
14 N -0.621 5.621
15 C 0.105 3.895
16 C -0.135 4.135
17 C -0.115 4.115
18 C -0.130 4.130
19 C 0.148 3.852
20 H 0.083 0.917
21 C 0.091 3.909
22 O -0.341 6.341
23 C 0.680 3.320
24 O -0.583 6.583
25 N -0.607 5.607
26 C 0.108 3.892
27 C -0.131 4.131
28 C -0.135 4.135
29 C 0.127 3.873
30 H 0.087 0.913
31 H 0.022 0.978
32 H 0.030 0.970
33 H 0.259 0.741
34 H 0.105 0.895
35 H 0.056 0.944
36 H 0.069 0.931
37 H 0.069 0.931
38 H 0.060 0.940
39 H 0.060 0.940
40 H 0.065 0.935
41 H 0.074 0.926
42 H 0.049 0.951
43 H 0.110 0.890
44 H 0.076 0.924
45 H 0.063 0.937
46 H 0.073 0.927
47 H 0.083 0.917
48 H 0.084 0.916
49 H 0.080 0.920
50 H 0.065 0.935
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.368 -5.411 -12.928 15.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.012 3.988
3 H 0.065 0.935
4 C -0.533 4.533
5 H 0.091 0.909
6 C -0.141 4.141
7 N -0.537 5.537
8 Si 0.723 3.277
9 H -0.197 1.197
10 H -0.211 1.211
11 H -0.211 1.211
12 C 0.319 3.681
13 O -0.404 6.404
14 N -0.358 5.358
15 C -0.018 4.018
16 C -0.174 4.174
17 C -0.153 4.153
18 C -0.168 4.168
19 C 0.044 3.956
20 H 0.101 0.899
21 C 0.017 3.983
22 O -0.253 6.253
23 C 0.436 3.564
24 O -0.473 6.473
25 N -0.350 5.350
26 C -0.015 4.015
27 C -0.169 4.169
28 C -0.173 4.173
29 C 0.005 3.995
30 H 0.105 0.895
31 H 0.040 0.960
32 H 0.050 0.950
33 H 0.069 0.931
34 H 0.123 0.877
35 H 0.074 0.926
36 H 0.088 0.912
37 H 0.087 0.913
38 H 0.079 0.921
39 H 0.079 0.921
40 H 0.084 0.916
41 H 0.093 0.907
42 H 0.067 0.933
43 H 0.128 0.872
44 H 0.095 0.905
45 H 0.082 0.918
46 H 0.092 0.908
47 H 0.102 0.898
48 H 0.103 0.897
49 H 0.099 0.901
50 H 0.083 0.917
51 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -5.643 -5.854 -12.846 15.203
hybrid contribution 0.248 -0.227 0.763 0.834
sum -5.395 -6.081 -12.083 14.563
Atomic orbital electron populations
1.21879 0.96490 1.00724 1.00035 1.18829 0.94093 0.96502 0.89416
0.93543 1.21166 1.30479 1.12653 0.88967 0.90941 1.24916 0.95218
0.95047 0.98966 1.69893 1.37425 1.23118 1.23275 0.86472 0.78623
0.79877 0.82746 1.19659 1.21099 1.21119 1.21891 0.77515 0.84666
0.84037 1.90480 1.39660 1.24913 1.85359 1.48312 1.60400 1.21912
1.05154 1.21750 0.93061 0.85089 1.01945 1.21863 0.98404 1.01151
0.95951 1.21484 1.00198 0.96375 0.97256 1.21939 0.98174 0.97714
0.98965 1.21257 0.96311 0.91047 0.86962 0.89909 1.23169 0.91749
0.88087 0.95339 1.86184 1.42719 1.24516 1.71896 1.17327 0.82288
0.80027 0.76783 1.90915 1.20011 1.74833 1.61523 1.46893 1.11404
1.15120 1.61567 1.21962 0.81209 0.98381 0.99984 1.22621 0.97523
0.96550 1.00161 1.22823 0.94964 1.00947 0.98565 1.22110 1.00341
0.81219 0.95784 0.89458 0.95960 0.95036 0.93149 0.87696 0.92558
0.91205 0.91253 0.92145 0.92125 0.91594 0.90724 0.93344 0.87206
0.90539 0.91845 0.90781 0.89793 0.89748 0.90082 0.91707 0.90286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.99 8.39 37.16 0.31 -2.68 16
2 C 0.03 0.80 1.80 -92.93 -0.17 0.63 16
3 H 0.05 1.19 7.57 -51.93 -0.39 0.79 16
4 C -0.49 -13.92 8.37 -34.44 -0.29 -14.21 16
5 H 0.07 2.20 6.76 -52.49 -0.35 1.85 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -24.95 11.39 55.43 0.63 -24.32 16
8 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16
9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
12 C 0.53 11.79 6.54 -10.99 -0.07 11.72 16
13 O -0.53 -13.26 9.72 -18.85 -0.18 -13.44 16
14 N -0.62 -10.89 2.98 -165.48 -0.49 -11.39 16
15 C 0.10 1.53 5.44 -3.93 -0.02 1.51 16
16 C -0.14 -1.62 5.82 -26.83 -0.16 -1.78 16
17 C -0.12 -1.24 5.89 -26.69 -0.16 -1.39 16
18 C -0.13 -1.63 5.28 -26.61 -0.14 -1.77 16
19 C 0.15 2.25 3.28 -67.60 -0.22 2.03 16
20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
21 C 0.09 1.65 4.20 37.16 0.16 1.80 16
22 O -0.34 -6.75 6.88 -48.43 -0.33 -7.08 16
23 C 0.68 14.05 8.17 54.06 0.44 14.50 16
24 O -0.58 -13.49 16.39 -19.28 -0.32 -13.80 16
25 N -0.61 -10.45 3.33 -176.30 -0.59 -11.03 16
26 C 0.11 1.55 6.89 -3.07 -0.02 1.53 16
27 C -0.13 -1.39 6.95 -24.91 -0.17 -1.56 16
28 C -0.13 -1.48 7.08 -24.57 -0.17 -1.65 16
29 C 0.13 1.75 6.91 -2.52 -0.02 1.74 16
30 H 0.09 2.15 6.25 -51.93 -0.32 1.82 16
31 H 0.02 0.41 4.60 -51.92 -0.24 0.17 16
32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
34 H 0.11 1.72 4.38 -51.93 -0.23 1.49 16
35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.07 0.93 7.52 -51.93 -0.39 0.54 16
38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.07 1.08 7.45 -51.93 -0.39 0.69 16
42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.11 2.37 5.92 -52.20 -0.31 2.06 16
44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
47 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
51 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16
LS Contribution 386.75 15.07 5.83 5.83
Total: -1.00 -33.56 386.75 -9.79 -43.35
By element:
Atomic # 1 Polarization: 11.52 SS G_CDS: -8.52 Total: 3.00 kcal
Atomic # 6 Polarization: 12.73 SS G_CDS: -0.80 Total: 11.94 kcal
Atomic # 7 Polarization: -46.29 SS G_CDS: -0.45 Total: -46.74 kcal
Atomic # 8 Polarization: -33.50 SS G_CDS: -0.83 Total: -34.33 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -33.56 -9.79 -43.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001411372585.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.920 kcal
(2) G-P(sol) polarization free energy of solvation -33.563 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds