Wall clock time and date at job start Tue Mar 31 2020 21:15:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09005 * 109.46912 * 2 1
4 4 C 1.50698 * 109.47192 * 120.00257 * 2 1 3
5 5 H 1.07997 * 120.00069 * 120.27616 * 4 2 1
6 6 C 1.37878 * 119.99824 * 300.00165 * 4 2 1
7 7 N 1.31524 * 120.00125 * 359.97438 * 6 4 2
8 8 Si 1.86802 * 119.99954 * 180.02562 * 6 4 2
9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47005 * 120.00027 * 8 6 4
11 11 H 1.48504 * 109.46920 * 239.99929 * 8 6 4
12 12 C 1.50699 * 109.47387 * 240.00522 * 2 1 3
13 13 O 1.21284 * 119.99846 * 243.90531 * 12 2 1
14 14 N 1.34771 * 120.00456 * 63.89779 * 12 2 1
15 15 C 1.46931 * 120.62829 * 4.03802 * 14 12 2
16 16 C 1.52763 * 109.00741 * 233.58204 * 15 14 12
17 17 C 1.53043 * 109.38424 * 305.58668 * 16 15 14
18 18 C 1.53045 * 109.53381 * 61.24098 * 17 16 15
19 19 C 1.46926 * 120.63216 * 184.31732 * 14 12 2
20 20 H 1.09001 * 109.58324 * 246.15760 * 19 14 12
21 21 C 1.52999 * 109.58694 * 6.44086 * 19 14 12
22 22 O 1.45195 * 109.47268 * 62.57062 * 21 19 14
23 23 C 1.34638 * 116.99908 * 180.02562 * 22 21 19
24 24 O 1.21513 * 119.99983 * 359.97438 * 23 22 21
25 25 N 1.34781 * 119.99797 * 179.97438 * 23 22 21
26 26 C 1.47020 * 125.64894 * 359.68799 * 25 23 22
27 27 C 1.54307 * 107.27485 * 180.96903 * 26 25 23
28 28 C 1.55150 * 102.86560 * 22.52662 * 27 26 25
29 29 C 1.47415 * 125.64600 * 179.97438 * 25 23 22
30 30 H 1.08997 * 109.47523 * 305.91548 * 1 2 3
31 31 H 1.09010 * 109.47063 * 65.91218 * 1 2 3
32 32 H 1.08996 * 109.47307 * 185.90838 * 1 2 3
33 33 H 0.96998 * 120.00227 * 179.97438 * 7 6 4
34 34 H 1.09002 * 109.58497 * 353.41850 * 15 14 12
35 35 H 1.09000 * 109.58400 * 113.84125 * 15 14 12
36 36 H 1.09000 * 109.56165 * 185.55594 * 16 15 14
37 37 H 1.08999 * 109.38764 * 65.51602 * 16 15 14
38 38 H 1.08999 * 109.46164 * 301.22102 * 17 16 15
39 39 H 1.08991 * 109.44786 * 181.25160 * 17 16 15
40 40 H 1.09006 * 109.49255 * 178.68287 * 18 17 16
41 41 H 1.08995 * 109.49886 * 58.59106 * 18 17 16
42 42 H 1.08999 * 109.46594 * 182.57207 * 21 19 14
43 43 H 1.09003 * 109.46713 * 302.56765 * 21 19 14
44 44 H 1.08999 * 109.88327 * 300.51888 * 26 25 23
45 45 H 1.09003 * 109.88014 * 61.67894 * 26 25 23
46 46 H 1.09000 * 110.92641 * 264.11180 * 27 26 25
47 47 H 1.08998 * 110.74229 * 140.85726 * 27 26 25
48 48 H 1.09003 * 111.00516 * 206.23137 * 28 27 26
49 49 H 1.09001 * 111.03877 * 82.38816 * 28 27 26
50 50 H 1.09004 * 110.36636 * 274.66811 * 29 25 23
51 51 H 1.08999 * 110.37085 * 36.99109 * 29 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7105 1.2304
5 1 2.6569 -1.5859 1.1313
6 6 1.6992 -0.2394 2.4827
7 7 0.9434 0.8302 2.6034
8 14 2.3225 -1.1197 4.0079
9 1 3.1474 -2.2863 3.6037
10 1 3.1471 -0.1858 4.8160
11 1 1.1677 -1.5868 4.8164
12 6 2.0324 -0.7103 -1.2305
13 8 2.6701 -1.7361 -1.1207
14 7 1.7729 -0.2058 -2.4530
15 6 1.0785 1.0807 -2.6000
16 6 -0.1307 0.8917 -3.5142
17 6 0.3241 0.2680 -4.8357
18 6 0.9473 -1.1037 -4.5664
19 6 2.1737 -0.9347 -3.6641
20 1 2.9415 -0.3701 -4.1931
21 6 2.7228 -2.3094 -3.2773
22 8 1.6777 -3.0843 -2.6329
23 6 1.9999 -4.3272 -2.2277
24 8 3.1236 -4.7528 -2.4081
25 7 1.0759 -5.0992 -1.6220
26 6 -0.3126 -4.7093 -1.3364
27 6 -0.9832 -5.8976 -0.6157
28 6 0.2257 -6.6698 -0.0245
29 6 1.2920 -6.4723 -1.1310
30 1 -0.3634 0.6028 0.8322
31 1 -0.3634 0.4195 -0.9383
32 1 -0.3634 -1.0222 0.1058
33 1 0.7088 1.1613 3.4844
34 1 0.7450 1.4296 -1.6227
35 1 1.7552 1.8129 -3.0404
36 1 -0.5955 1.8582 -3.7091
37 1 -0.8511 0.2327 -3.0297
38 1 1.0625 0.9159 -5.3080
39 1 -0.5344 0.1532 -5.4972
40 1 1.2497 -1.5574 -5.5103
41 1 0.2172 -1.7442 -4.0718
42 1 3.0617 -2.8302 -4.1728
43 1 3.5599 -2.1859 -2.5901
44 1 -0.3257 -3.8286 -0.6943
45 1 -0.8377 -4.4991 -2.2681
46 1 -1.5316 -6.5216 -1.3214
47 1 -1.6417 -5.5457 0.1783
48 1 -0.0111 -7.7258 0.1056
49 1 0.5515 -6.2258 0.9162
50 1 1.1410 -7.1913 -1.9362
51 1 2.2942 -6.5729 -0.7143
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001411372585.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:41
Heat of formation + Delta-G solvation = -117.679149 kcal
Electronic energy + Delta-G solvation = -32762.758919 eV
Core-core repulsion = 28662.005188 eV
Total energy + Delta-G solvation = -4100.753731 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.86412 -41.02027 -39.04836 -38.23428 -37.15390 -35.88341 -33.89737 -33.40757
-32.53843 -31.71816 -30.03295 -28.28726 -27.21441 -25.78959 -24.81182 -24.31285
-22.80488 -22.18115 -21.79697 -21.31817 -19.65145 -19.15671 -18.39210 -17.99163
-17.96035 -17.40131 -16.78028 -16.70914 -16.16589 -15.77142 -15.54999 -15.23833
-15.08874 -14.88916 -14.71499 -14.56314 -14.31971 -14.14948 -13.99721 -13.73511
-13.71862 -13.25831 -13.18018 -12.96341 -12.75976 -12.70273 -12.44582 -12.27311
-12.25580 -12.21853 -12.17889 -12.03173 -11.79570 -11.67117 -11.65060 -11.58828
-11.46286 -11.32142 -11.02205 -10.54893 -9.83663 -9.66135 -9.37926 -8.16968
-6.24883 1.17402 1.32585 1.35003 1.48430 1.85972 2.01251 2.20338
2.43360 2.98953 3.12679 3.58638 3.61866 3.69946 3.82264 4.00551
4.01594 4.18373 4.22572 4.24957 4.31523 4.33808 4.38246 4.41482
4.56915 4.63970 4.72350 4.77654 4.79511 4.81320 4.86159 4.92876
4.93261 5.00378 5.04319 5.05510 5.07075 5.14800 5.21264 5.25849
5.27661 5.34780 5.44880 5.49884 5.54488 5.73386 5.78775 5.97505
6.22004 6.40628 6.66099 6.83594 7.28330 7.41306 7.63756 8.89429
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.007335 B = 0.006505 C = 0.004116
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3816.414522 B = 4303.400299 C = 6801.725758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C 0.032 3.968
3 H 0.034 0.966
4 C -0.519 4.519
5 H 0.038 0.962
6 C 0.024 3.976
7 N -0.908 5.908
8 Si 0.946 3.054
9 H -0.288 1.288
10 H -0.273 1.273
11 H -0.270 1.270
12 C 0.523 3.477
13 O -0.565 6.565
14 N -0.613 5.613
15 C 0.096 3.904
16 C -0.130 4.130
17 C -0.108 4.108
18 C -0.122 4.122
19 C 0.147 3.853
20 H 0.113 0.887
21 C 0.090 3.910
22 O -0.344 6.344
23 C 0.664 3.336
24 O -0.621 6.621
25 N -0.611 5.611
26 C 0.103 3.897
27 C -0.117 4.117
28 C -0.126 4.126
29 C 0.116 3.884
30 H 0.066 0.934
31 H 0.058 0.942
32 H 0.012 0.988
33 H 0.264 0.736
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.099 0.901
37 H 0.052 0.948
38 H 0.080 0.920
39 H 0.083 0.917
40 H 0.090 0.910
41 H 0.052 0.948
42 H 0.066 0.934
43 H 0.067 0.933
44 H 0.039 0.961
45 H 0.077 0.923
46 H 0.107 0.893
47 H 0.094 0.906
48 H 0.125 0.875
49 H 0.060 0.940
50 H 0.091 0.909
51 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.513 -5.265 -14.787 17.856
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.011 3.989
3 H 0.051 0.949
4 C -0.558 4.558
5 H 0.056 0.944
6 C -0.175 4.175
7 N -0.548 5.548
8 Si 0.773 3.227
9 H -0.214 1.214
10 H -0.199 1.199
11 H -0.196 1.196
12 C 0.314 3.686
13 O -0.444 6.444
14 N -0.348 5.348
15 C -0.026 4.026
16 C -0.168 4.168
17 C -0.146 4.146
18 C -0.160 4.160
19 C 0.044 3.956
20 H 0.130 0.870
21 C 0.015 3.985
22 O -0.256 6.256
23 C 0.420 3.580
24 O -0.514 6.514
25 N -0.353 5.353
26 C -0.019 4.019
27 C -0.155 4.155
28 C -0.164 4.164
29 C -0.004 4.004
30 H 0.085 0.915
31 H 0.077 0.923
32 H 0.032 0.968
33 H 0.074 0.926
34 H 0.101 0.899
35 H 0.101 0.899
36 H 0.117 0.883
37 H 0.071 0.929
38 H 0.099 0.901
39 H 0.101 0.899
40 H 0.109 0.891
41 H 0.071 0.929
42 H 0.084 0.916
43 H 0.086 0.914
44 H 0.058 0.942
45 H 0.095 0.905
46 H 0.125 0.875
47 H 0.113 0.887
48 H 0.143 0.857
49 H 0.079 0.921
50 H 0.109 0.891
51 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -7.847 -5.669 -14.723 17.620
hybrid contribution 0.955 -0.236 1.313 1.641
sum -6.891 -5.905 -13.410 16.192
Atomic orbital electron populations
1.21640 0.95069 0.99294 1.01084 1.18700 0.95146 0.95372 0.89664
0.94863 1.21216 1.30991 1.12289 0.91296 0.94393 1.25478 0.95325
0.95714 1.00984 1.69953 1.37353 1.23389 1.24081 0.85688 0.78445
0.78524 0.80067 1.21373 1.19852 1.19552 1.21456 0.77663 0.84266
0.85239 1.90506 1.41275 1.26401 1.86262 1.48218 1.59460 1.22749
1.04407 1.21997 0.94739 0.83896 1.01919 1.21849 0.96556 1.02541
0.95880 1.21477 1.01439 0.94916 0.96725 1.21896 0.96133 0.99117
0.98859 1.21562 0.98591 0.89174 0.86252 0.86999 1.23193 0.90637
0.89960 0.94667 1.86184 1.43082 1.24332 1.72012 1.17762 0.82596
0.80412 0.77190 1.90860 1.21653 1.75576 1.63314 1.47245 1.11949
1.15952 1.60124 1.22127 0.80330 0.99026 1.00453 1.22648 0.97176
0.94973 1.00683 1.22839 0.93867 1.03275 0.96384 1.22442 1.00300
0.80123 0.97574 0.91503 0.92313 0.96832 0.92647 0.89866 0.89932
0.88291 0.92944 0.90105 0.89855 0.89126 0.92936 0.91644 0.91436
0.94244 0.90460 0.87456 0.88740 0.85720 0.92111 0.89064 0.92642
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.23 8.39 71.98 0.60 -4.63 16
2 C 0.03 1.65 1.80 -12.29 -0.02 1.63 16
3 H 0.03 1.77 7.57 -2.38 -0.02 1.76 16
4 C -0.52 -30.87 8.37 25.60 0.21 -30.65 16
5 H 0.04 2.48 6.76 -2.91 -0.02 2.46 16
6 C 0.02 1.38 5.30 84.65 0.45 1.83 16
7 N -0.91 -51.26 11.39 21.45 0.24 -51.02 16
8 Si 0.95 46.22 29.54 68.60 2.03 48.25 16
9 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16
10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16
11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
12 C 0.52 24.50 6.54 87.66 0.57 25.07 16
13 O -0.57 -30.41 9.72 20.29 0.20 -30.22 16
14 N -0.61 -21.43 2.98 -795.84 -2.37 -23.80 16
15 C 0.10 2.64 5.44 86.22 0.47 3.10 16
16 C -0.13 -2.69 5.82 30.53 0.18 -2.51 16
17 C -0.11 -1.84 5.89 30.62 0.18 -1.66 16
18 C -0.12 -2.73 5.28 30.67 0.16 -2.57 16
19 C 0.15 4.30 3.28 44.97 0.15 4.45 16
20 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16
21 C 0.09 3.37 4.20 71.98 0.30 3.67 16
22 O -0.34 -14.28 6.88 -47.72 -0.33 -14.61 16
23 C 0.66 29.02 8.17 129.79 1.06 30.08 16
24 O -0.62 -30.55 16.39 19.80 0.32 -30.22 16
25 N -0.61 -21.78 3.33 -942.10 -3.13 -24.91 16
26 C 0.10 3.01 6.89 86.72 0.60 3.60 16
27 C -0.12 -2.25 6.95 31.77 0.22 -2.03 16
28 C -0.13 -2.58 7.08 31.99 0.23 -2.36 16
29 C 0.12 3.22 6.91 86.86 0.60 3.82 16
30 H 0.07 3.36 6.25 -2.39 -0.01 3.35 16
31 H 0.06 2.22 4.60 -2.38 -0.01 2.21 16
32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16
34 H 0.08 2.66 4.38 -2.39 -0.01 2.65 16
35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
37 H 0.05 1.28 7.52 -2.39 -0.02 1.26 16
38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
40 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16
41 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16
42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
43 H 0.07 3.12 5.92 -6.67 -0.04 3.08 16
44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
46 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16
47 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
48 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16
49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
50 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
51 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16
Total: -1.00 -79.98 386.75 3.81 -76.17
By element:
Atomic # 1 Polarization: 18.63 SS G_CDS: 0.89 Total: 19.52 kcal
Atomic # 6 Polarization: 24.89 SS G_CDS: 5.96 Total: 30.85 kcal
Atomic # 7 Polarization: -94.47 SS G_CDS: -5.26 Total: -99.73 kcal
Atomic # 8 Polarization: -75.24 SS G_CDS: 0.19 Total: -75.05 kcal
Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal
Total: -79.98 3.81 -76.17 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001411372585.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.514 kcal
(2) G-P(sol) polarization free energy of solvation -79.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.679 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds