Wall clock time and date at job start Tue Mar 31 2020 21:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46912 * 2 1 4 4 C 1.50698 * 109.47192 * 120.00257 * 2 1 3 5 5 H 1.07997 * 120.00069 * 120.27616 * 4 2 1 6 6 C 1.37878 * 119.99824 * 300.00165 * 4 2 1 7 7 N 1.31524 * 120.00125 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99954 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47005 * 120.00027 * 8 6 4 11 11 H 1.48504 * 109.46920 * 239.99929 * 8 6 4 12 12 C 1.50699 * 109.47387 * 240.00522 * 2 1 3 13 13 O 1.21284 * 119.99846 * 243.90531 * 12 2 1 14 14 N 1.34771 * 120.00456 * 63.89779 * 12 2 1 15 15 C 1.46931 * 120.62829 * 4.03802 * 14 12 2 16 16 C 1.52763 * 109.00741 * 233.58204 * 15 14 12 17 17 C 1.53043 * 109.38424 * 305.58668 * 16 15 14 18 18 C 1.53045 * 109.53381 * 61.24098 * 17 16 15 19 19 C 1.46926 * 120.63216 * 184.31732 * 14 12 2 20 20 H 1.09001 * 109.58324 * 246.15760 * 19 14 12 21 21 C 1.52999 * 109.58694 * 6.44086 * 19 14 12 22 22 O 1.45195 * 109.47268 * 62.57062 * 21 19 14 23 23 C 1.34638 * 116.99908 * 180.02562 * 22 21 19 24 24 O 1.21513 * 119.99983 * 359.97438 * 23 22 21 25 25 N 1.34781 * 119.99797 * 179.97438 * 23 22 21 26 26 C 1.47020 * 125.64894 * 359.68799 * 25 23 22 27 27 C 1.54307 * 107.27485 * 180.96903 * 26 25 23 28 28 C 1.55150 * 102.86560 * 22.52662 * 27 26 25 29 29 C 1.47415 * 125.64600 * 179.97438 * 25 23 22 30 30 H 1.08997 * 109.47523 * 305.91548 * 1 2 3 31 31 H 1.09010 * 109.47063 * 65.91218 * 1 2 3 32 32 H 1.08996 * 109.47307 * 185.90838 * 1 2 3 33 33 H 0.96998 * 120.00227 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.58497 * 353.41850 * 15 14 12 35 35 H 1.09000 * 109.58400 * 113.84125 * 15 14 12 36 36 H 1.09000 * 109.56165 * 185.55594 * 16 15 14 37 37 H 1.08999 * 109.38764 * 65.51602 * 16 15 14 38 38 H 1.08999 * 109.46164 * 301.22102 * 17 16 15 39 39 H 1.08991 * 109.44786 * 181.25160 * 17 16 15 40 40 H 1.09006 * 109.49255 * 178.68287 * 18 17 16 41 41 H 1.08995 * 109.49886 * 58.59106 * 18 17 16 42 42 H 1.08999 * 109.46594 * 182.57207 * 21 19 14 43 43 H 1.09003 * 109.46713 * 302.56765 * 21 19 14 44 44 H 1.08999 * 109.88327 * 300.51888 * 26 25 23 45 45 H 1.09003 * 109.88014 * 61.67894 * 26 25 23 46 46 H 1.09000 * 110.92641 * 264.11180 * 27 26 25 47 47 H 1.08998 * 110.74229 * 140.85726 * 27 26 25 48 48 H 1.09003 * 111.00516 * 206.23137 * 28 27 26 49 49 H 1.09001 * 111.03877 * 82.38816 * 28 27 26 50 50 H 1.09004 * 110.36636 * 274.66811 * 29 25 23 51 51 H 1.08999 * 110.37085 * 36.99109 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6569 -1.5859 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1474 -2.2863 3.6037 10 1 3.1471 -0.1858 4.8160 11 1 1.1677 -1.5868 4.8164 12 6 2.0324 -0.7103 -1.2305 13 8 2.6701 -1.7361 -1.1207 14 7 1.7729 -0.2058 -2.4530 15 6 1.0785 1.0807 -2.6000 16 6 -0.1307 0.8917 -3.5142 17 6 0.3241 0.2680 -4.8357 18 6 0.9473 -1.1037 -4.5664 19 6 2.1737 -0.9347 -3.6641 20 1 2.9415 -0.3701 -4.1931 21 6 2.7228 -2.3094 -3.2773 22 8 1.6777 -3.0843 -2.6329 23 6 1.9999 -4.3272 -2.2277 24 8 3.1236 -4.7528 -2.4081 25 7 1.0759 -5.0992 -1.6220 26 6 -0.3126 -4.7093 -1.3364 27 6 -0.9832 -5.8976 -0.6157 28 6 0.2257 -6.6698 -0.0245 29 6 1.2920 -6.4723 -1.1310 30 1 -0.3634 0.6028 0.8322 31 1 -0.3634 0.4195 -0.9383 32 1 -0.3634 -1.0222 0.1058 33 1 0.7088 1.1613 3.4844 34 1 0.7450 1.4296 -1.6227 35 1 1.7552 1.8129 -3.0404 36 1 -0.5955 1.8582 -3.7091 37 1 -0.8511 0.2327 -3.0297 38 1 1.0625 0.9159 -5.3080 39 1 -0.5344 0.1532 -5.4972 40 1 1.2497 -1.5574 -5.5103 41 1 0.2172 -1.7442 -4.0718 42 1 3.0617 -2.8302 -4.1728 43 1 3.5599 -2.1859 -2.5901 44 1 -0.3257 -3.8286 -0.6943 45 1 -0.8377 -4.4991 -2.2681 46 1 -1.5316 -6.5216 -1.3214 47 1 -1.6417 -5.5457 0.1783 48 1 -0.0111 -7.7258 0.1056 49 1 0.5515 -6.2258 0.9162 50 1 1.1410 -7.1913 -1.9362 51 1 2.2942 -6.5729 -0.7143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411372585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:41 Heat of formation + Delta-G solvation = -117.679149 kcal Electronic energy + Delta-G solvation = -32762.758919 eV Core-core repulsion = 28662.005188 eV Total energy + Delta-G solvation = -4100.753731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86412 -41.02027 -39.04836 -38.23428 -37.15390 -35.88341 -33.89737 -33.40757 -32.53843 -31.71816 -30.03295 -28.28726 -27.21441 -25.78959 -24.81182 -24.31285 -22.80488 -22.18115 -21.79697 -21.31817 -19.65145 -19.15671 -18.39210 -17.99163 -17.96035 -17.40131 -16.78028 -16.70914 -16.16589 -15.77142 -15.54999 -15.23833 -15.08874 -14.88916 -14.71499 -14.56314 -14.31971 -14.14948 -13.99721 -13.73511 -13.71862 -13.25831 -13.18018 -12.96341 -12.75976 -12.70273 -12.44582 -12.27311 -12.25580 -12.21853 -12.17889 -12.03173 -11.79570 -11.67117 -11.65060 -11.58828 -11.46286 -11.32142 -11.02205 -10.54893 -9.83663 -9.66135 -9.37926 -8.16968 -6.24883 1.17402 1.32585 1.35003 1.48430 1.85972 2.01251 2.20338 2.43360 2.98953 3.12679 3.58638 3.61866 3.69946 3.82264 4.00551 4.01594 4.18373 4.22572 4.24957 4.31523 4.33808 4.38246 4.41482 4.56915 4.63970 4.72350 4.77654 4.79511 4.81320 4.86159 4.92876 4.93261 5.00378 5.04319 5.05510 5.07075 5.14800 5.21264 5.25849 5.27661 5.34780 5.44880 5.49884 5.54488 5.73386 5.78775 5.97505 6.22004 6.40628 6.66099 6.83594 7.28330 7.41306 7.63756 8.89429 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007335 B = 0.006505 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3816.414522 B = 4303.400299 C = 6801.725758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.032 3.968 3 H 0.034 0.966 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.946 3.054 9 H -0.288 1.288 10 H -0.273 1.273 11 H -0.270 1.270 12 C 0.523 3.477 13 O -0.565 6.565 14 N -0.613 5.613 15 C 0.096 3.904 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.147 3.853 20 H 0.113 0.887 21 C 0.090 3.910 22 O -0.344 6.344 23 C 0.664 3.336 24 O -0.621 6.621 25 N -0.611 5.611 26 C 0.103 3.897 27 C -0.117 4.117 28 C -0.126 4.126 29 C 0.116 3.884 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.125 0.875 49 H 0.060 0.940 50 H 0.091 0.909 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 -5.265 -14.787 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.011 3.989 3 H 0.051 0.949 4 C -0.558 4.558 5 H 0.056 0.944 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.773 3.227 9 H -0.214 1.214 10 H -0.199 1.199 11 H -0.196 1.196 12 C 0.314 3.686 13 O -0.444 6.444 14 N -0.348 5.348 15 C -0.026 4.026 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.160 4.160 19 C 0.044 3.956 20 H 0.130 0.870 21 C 0.015 3.985 22 O -0.256 6.256 23 C 0.420 3.580 24 O -0.514 6.514 25 N -0.353 5.353 26 C -0.019 4.019 27 C -0.155 4.155 28 C -0.164 4.164 29 C -0.004 4.004 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.143 0.857 49 H 0.079 0.921 50 H 0.109 0.891 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.847 -5.669 -14.723 17.620 hybrid contribution 0.955 -0.236 1.313 1.641 sum -6.891 -5.905 -13.410 16.192 Atomic orbital electron populations 1.21640 0.95069 0.99294 1.01084 1.18700 0.95146 0.95372 0.89664 0.94863 1.21216 1.30991 1.12289 0.91296 0.94393 1.25478 0.95325 0.95714 1.00984 1.69953 1.37353 1.23389 1.24081 0.85688 0.78445 0.78524 0.80067 1.21373 1.19852 1.19552 1.21456 0.77663 0.84266 0.85239 1.90506 1.41275 1.26401 1.86262 1.48218 1.59460 1.22749 1.04407 1.21997 0.94739 0.83896 1.01919 1.21849 0.96556 1.02541 0.95880 1.21477 1.01439 0.94916 0.96725 1.21896 0.96133 0.99117 0.98859 1.21562 0.98591 0.89174 0.86252 0.86999 1.23193 0.90637 0.89960 0.94667 1.86184 1.43082 1.24332 1.72012 1.17762 0.82596 0.80412 0.77190 1.90860 1.21653 1.75576 1.63314 1.47245 1.11949 1.15952 1.60124 1.22127 0.80330 0.99026 1.00453 1.22648 0.97176 0.94973 1.00683 1.22839 0.93867 1.03275 0.96384 1.22442 1.00300 0.80123 0.97574 0.91503 0.92313 0.96832 0.92647 0.89866 0.89932 0.88291 0.92944 0.90105 0.89855 0.89126 0.92936 0.91644 0.91436 0.94244 0.90460 0.87456 0.88740 0.85720 0.92111 0.89064 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.23 8.39 71.98 0.60 -4.63 16 2 C 0.03 1.65 1.80 -12.29 -0.02 1.63 16 3 H 0.03 1.77 7.57 -2.38 -0.02 1.76 16 4 C -0.52 -30.87 8.37 25.60 0.21 -30.65 16 5 H 0.04 2.48 6.76 -2.91 -0.02 2.46 16 6 C 0.02 1.38 5.30 84.65 0.45 1.83 16 7 N -0.91 -51.26 11.39 21.45 0.24 -51.02 16 8 Si 0.95 46.22 29.54 68.60 2.03 48.25 16 9 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.52 24.50 6.54 87.66 0.57 25.07 16 13 O -0.57 -30.41 9.72 20.29 0.20 -30.22 16 14 N -0.61 -21.43 2.98 -795.84 -2.37 -23.80 16 15 C 0.10 2.64 5.44 86.22 0.47 3.10 16 16 C -0.13 -2.69 5.82 30.53 0.18 -2.51 16 17 C -0.11 -1.84 5.89 30.62 0.18 -1.66 16 18 C -0.12 -2.73 5.28 30.67 0.16 -2.57 16 19 C 0.15 4.30 3.28 44.97 0.15 4.45 16 20 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16 21 C 0.09 3.37 4.20 71.98 0.30 3.67 16 22 O -0.34 -14.28 6.88 -47.72 -0.33 -14.61 16 23 C 0.66 29.02 8.17 129.79 1.06 30.08 16 24 O -0.62 -30.55 16.39 19.80 0.32 -30.22 16 25 N -0.61 -21.78 3.33 -942.10 -3.13 -24.91 16 26 C 0.10 3.01 6.89 86.72 0.60 3.60 16 27 C -0.12 -2.25 6.95 31.77 0.22 -2.03 16 28 C -0.13 -2.58 7.08 31.99 0.23 -2.36 16 29 C 0.12 3.22 6.91 86.86 0.60 3.82 16 30 H 0.07 3.36 6.25 -2.39 -0.01 3.35 16 31 H 0.06 2.22 4.60 -2.38 -0.01 2.21 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.08 2.66 4.38 -2.39 -0.01 2.65 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.28 7.52 -2.39 -0.02 1.26 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 3.12 5.92 -6.67 -0.04 3.08 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -79.98 386.75 3.81 -76.17 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.89 Total: 19.52 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 5.96 Total: 30.85 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -5.26 Total: -99.73 kcal Atomic # 8 Polarization: -75.24 SS G_CDS: 0.19 Total: -75.05 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -79.98 3.81 -76.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.514 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds