Wall clock time and date at job start Tue Mar 31 2020 21:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46761 * 2 1 4 4 C 1.50704 * 109.47303 * 240.00204 * 2 1 3 5 5 H 1.07993 * 119.99763 * 240.00092 * 4 2 1 6 6 C 1.37875 * 119.99997 * 59.99446 * 4 2 1 7 7 N 1.31512 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46788 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47030 * 120.00146 * 8 6 4 11 11 H 1.48493 * 109.47400 * 240.00495 * 8 6 4 12 12 C 1.50697 * 109.47137 * 120.00063 * 2 1 3 13 13 O 1.21273 * 120.00382 * 111.48051 * 12 2 1 14 14 N 1.34774 * 119.99688 * 291.47614 * 12 2 1 15 15 C 1.46938 * 120.60847 * 5.72611 * 14 12 2 16 16 C 1.53190 * 108.77234 * 233.55197 * 15 14 12 17 17 C 1.53034 * 109.34203 * 305.41257 * 16 15 14 18 18 C 1.53047 * 109.53887 * 61.34808 * 17 16 15 19 19 C 1.46925 * 120.63121 * 185.72254 * 14 12 2 20 20 H 1.09004 * 109.58896 * 246.20474 * 19 14 12 21 21 C 1.53003 * 109.70208 * 6.55981 * 19 14 12 22 22 O 1.45196 * 109.47318 * 61.52603 * 21 19 14 23 23 C 1.34632 * 117.00112 * 180.02562 * 22 21 19 24 24 O 1.21513 * 120.00200 * 359.97438 * 23 22 21 25 25 N 1.34783 * 119.99992 * 179.97438 * 23 22 21 26 26 C 1.47026 * 125.64676 * 359.68985 * 25 23 22 27 27 C 1.54311 * 107.27297 * 180.97081 * 26 25 23 28 28 C 1.55158 * 102.86710 * 22.52385 * 27 26 25 29 29 C 1.47422 * 125.64722 * 180.02562 * 25 23 22 30 30 H 1.09006 * 109.47276 * 61.91754 * 1 2 3 31 31 H 1.09000 * 109.46708 * 181.91434 * 1 2 3 32 32 H 1.09002 * 109.47320 * 301.91774 * 1 2 3 33 33 H 0.97005 * 120.00519 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.56218 * 113.78110 * 15 14 12 35 35 H 1.08992 * 109.61176 * 353.35902 * 15 14 12 36 36 H 1.09005 * 109.49383 * 185.44521 * 16 15 14 37 37 H 1.09001 * 109.49852 * 65.38487 * 16 15 14 38 38 H 1.08995 * 109.46359 * 181.36830 * 17 16 15 39 39 H 1.08998 * 109.46070 * 301.34729 * 17 16 15 40 40 H 1.09000 * 109.49209 * 58.58661 * 18 17 16 41 41 H 1.09000 * 109.49733 * 178.65367 * 18 17 16 42 42 H 1.09000 * 109.47019 * 181.52774 * 21 19 14 43 43 H 1.09001 * 109.46867 * 301.52295 * 21 19 14 44 44 H 1.09000 * 109.87953 * 300.51454 * 26 25 23 45 45 H 1.08997 * 109.87843 * 61.68266 * 26 25 23 46 46 H 1.09006 * 110.92232 * 264.11423 * 27 26 25 47 47 H 1.08996 * 110.74543 * 140.85474 * 27 26 25 48 48 H 1.09002 * 111.00683 * 206.23053 * 28 27 26 49 49 H 1.09003 * 111.03268 * 82.39424 * 28 27 26 50 50 H 1.09003 * 110.36288 * 274.66689 * 29 25 23 51 51 H 1.08996 * 110.37151 * 36.99126 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.5970 -1.7785 1.1259 14 7 1.8540 -0.1586 2.4470 15 6 1.0639 1.0705 2.6026 16 6 1.9053 2.1053 3.3562 17 6 2.3926 1.4996 4.6744 18 6 3.2720 0.2812 4.3837 19 6 2.4458 -0.7746 3.6424 20 1 1.6534 -1.1425 4.2944 21 6 3.3510 -1.9370 3.2293 22 8 4.4311 -1.4374 2.3975 23 6 5.3227 -2.3396 1.9463 24 8 5.2019 -3.5125 2.2400 25 7 6.3493 -1.9420 1.1688 26 6 6.6101 -0.5620 0.7336 27 6 7.8710 -0.5925 -0.1555 28 6 7.9170 -2.0660 -0.6393 29 6 7.3927 -2.8197 0.6082 30 1 -0.3634 0.4838 -0.9067 31 1 -0.3633 -1.0271 0.0343 32 1 -0.3634 0.5433 0.8723 33 1 0.7094 1.1618 -3.4845 34 1 0.1585 0.8530 3.1693 35 1 0.7978 1.4610 1.6205 36 1 1.2982 2.9866 3.5632 37 1 2.7635 2.3896 2.7472 38 1 2.9712 2.2423 5.2234 39 1 1.5343 1.1932 5.2724 40 1 4.1173 0.5821 3.7648 41 1 3.6381 -0.1354 5.3220 42 1 3.7665 -2.4082 4.1200 43 1 2.7694 -2.6689 2.6688 44 1 5.7608 -0.1865 0.1629 45 1 6.7862 0.0733 1.6016 46 1 8.7617 -0.3488 0.4237 47 1 7.7641 0.0876 -1.0004 48 1 8.9371 -2.3672 -0.8779 49 1 7.2570 -2.2181 -1.4934 50 1 8.1965 -2.9625 1.3304 51 1 6.9657 -3.7801 0.3196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411372594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:45 Heat of formation + Delta-G solvation = -98.683098 kcal Electronic energy + Delta-G solvation = -32668.460266 eV Core-core repulsion = 28568.530266 eV Total energy + Delta-G solvation = -4099.930000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35382 -39.54350 -37.74021 -36.79468 -35.57634 -33.92643 -32.40175 -32.07826 -31.25883 -29.97501 -28.91414 -26.92813 -25.19084 -24.47296 -23.57165 -22.66712 -21.55349 -21.14392 -20.37367 -19.86296 -18.29055 -17.76814 -16.63724 -16.57983 -16.09558 -15.91237 -15.27196 -14.96170 -14.58054 -14.53337 -14.28489 -13.94929 -13.71034 -13.48253 -13.40637 -13.20443 -12.95024 -12.74728 -12.60885 -12.34100 -12.18643 -11.91997 -11.68560 -11.31224 -11.27117 -11.21355 -11.15303 -11.00209 -10.79366 -10.71188 -10.70322 -10.64026 -10.47843 -10.30961 -10.14494 -10.02032 -9.99487 -9.84856 -8.94608 -8.45533 -8.40451 -8.01785 -7.88934 -6.02240 -4.04165 2.55472 3.30571 3.38662 3.43860 3.46518 3.61322 3.78899 4.29251 4.46859 4.64350 4.71377 4.86228 4.90958 4.95227 5.00317 5.25148 5.31269 5.33295 5.37094 5.41943 5.48352 5.61489 5.67524 5.74122 5.74735 5.83786 5.87317 5.91698 5.94714 5.95026 5.99827 6.07716 6.15085 6.22440 6.24366 6.26314 6.33166 6.47279 6.52913 6.64004 6.85636 6.93561 6.96943 7.16618 7.47965 7.77994 7.87386 8.01548 8.14629 8.42958 8.83864 9.04931 9.32533 9.60999 11.05314 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007168 B = 0.006797 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3905.077875 B = 4118.421737 C = 6858.450527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 H 0.048 0.952 4 C -0.492 4.492 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.528 3.472 13 O -0.529 6.529 14 N -0.622 5.622 15 C 0.107 3.893 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.130 4.130 19 C 0.148 3.852 20 H 0.083 0.917 21 C 0.092 3.908 22 O -0.341 6.341 23 C 0.680 3.320 24 O -0.583 6.583 25 N -0.607 5.607 26 C 0.107 3.893 27 C -0.130 4.130 28 C -0.135 4.135 29 C 0.127 3.873 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 3.247 11.612 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.320 3.680 13 O -0.405 6.405 14 N -0.359 5.359 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.153 4.153 18 C -0.168 4.168 19 C 0.044 3.956 20 H 0.101 0.899 21 C 0.017 3.983 22 O -0.253 6.253 23 C 0.436 3.564 24 O -0.474 6.474 25 N -0.349 5.349 26 C -0.016 4.016 27 C -0.168 4.168 28 C -0.173 4.173 29 C 0.006 3.994 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.164 2.391 11.591 14.378 hybrid contribution 0.139 -0.290 -0.740 0.807 sum 8.304 2.100 10.851 13.824 Atomic orbital electron populations 1.21935 0.96704 0.99664 1.01536 1.18821 0.93954 0.96545 0.89397 0.93474 1.21154 1.30501 1.12439 0.88942 0.91005 1.24911 0.95237 0.95070 0.98950 1.69870 1.37364 1.23172 1.23285 0.86479 0.78698 0.79813 0.82773 1.19663 1.21087 1.21116 1.21880 0.76800 0.85374 0.83959 1.90479 1.42399 1.22353 1.85231 1.48322 1.54000 1.27156 1.06386 1.21874 0.92858 0.84514 1.02399 1.21946 1.00708 0.98145 0.96669 1.21485 0.99319 0.97225 0.97302 1.21947 0.99065 0.95883 0.99926 1.21248 0.94032 0.92579 0.87697 0.89945 1.23145 0.86585 0.97179 0.91382 1.86187 1.36395 1.38622 1.64127 1.17319 0.78546 0.82942 0.77589 1.90913 1.76614 1.17231 1.62610 1.46898 1.26286 1.09838 1.51920 1.21981 0.98406 0.83028 0.98210 1.22623 0.97253 0.97300 0.99669 1.22819 1.01835 0.95045 0.97625 1.22099 0.88885 0.94317 0.94129 0.88843 0.95169 0.96112 0.93117 0.92408 0.87751 0.91231 0.91351 0.92124 0.92156 0.90720 0.91572 0.93269 0.87357 0.90318 0.91843 0.90806 0.89760 0.89757 0.90088 0.91716 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.57 37.16 0.32 -2.89 16 2 C 0.03 0.83 1.80 -92.92 -0.17 0.66 16 3 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 4 C -0.49 -13.78 8.37 -34.44 -0.29 -14.07 16 5 H 0.07 2.17 6.79 -52.49 -0.36 1.82 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.85 11.31 55.43 0.63 -24.22 16 8 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C 0.53 11.83 6.48 -10.99 -0.07 11.76 16 13 O -0.53 -13.29 9.83 -18.82 -0.19 -13.47 16 14 N -0.62 -10.95 2.97 -165.21 -0.49 -11.44 16 15 C 0.11 1.56 5.22 -3.70 -0.02 1.54 16 16 C -0.14 -1.65 6.08 -26.62 -0.16 -1.81 16 17 C -0.12 -1.25 5.88 -26.69 -0.16 -1.40 16 18 C -0.13 -1.64 5.28 -26.61 -0.14 -1.78 16 19 C 0.15 2.26 3.28 -67.60 -0.22 2.04 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 21 C 0.09 1.66 4.18 37.16 0.16 1.82 16 22 O -0.34 -6.81 6.86 -48.41 -0.33 -7.14 16 23 C 0.68 14.16 8.18 54.06 0.44 14.60 16 24 O -0.58 -13.54 16.39 -19.28 -0.32 -13.86 16 25 N -0.61 -10.59 3.33 -176.32 -0.59 -11.18 16 26 C 0.11 1.58 6.89 -3.07 -0.02 1.55 16 27 C -0.13 -1.43 6.95 -24.90 -0.17 -1.61 16 28 C -0.14 -1.53 7.08 -24.59 -0.17 -1.70 16 29 C 0.13 1.79 6.91 -2.54 -0.02 1.77 16 30 H 0.09 2.35 6.02 -51.93 -0.31 2.04 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.39 5.40 -51.93 -0.28 0.11 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.72 4.42 -51.93 -0.23 1.49 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 2.33 5.97 -52.03 -0.31 2.02 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -33.41 388.18 -9.83 -43.24 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.58 Total: 3.43 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -0.79 Total: 12.00 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.45 Total: -46.84 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.83 Total: -34.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.41 -9.83 -43.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.446 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds