Wall clock time and date at job start Tue Mar 31 2020 21:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46761 * 2 1 4 4 C 1.50704 * 109.47303 * 240.00204 * 2 1 3 5 5 H 1.07993 * 119.99763 * 240.00092 * 4 2 1 6 6 C 1.37875 * 119.99997 * 59.99446 * 4 2 1 7 7 N 1.31512 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46788 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47030 * 120.00146 * 8 6 4 11 11 H 1.48493 * 109.47400 * 240.00495 * 8 6 4 12 12 C 1.50697 * 109.47137 * 120.00063 * 2 1 3 13 13 O 1.21273 * 120.00382 * 111.48051 * 12 2 1 14 14 N 1.34774 * 119.99688 * 291.47614 * 12 2 1 15 15 C 1.46938 * 120.60847 * 5.72611 * 14 12 2 16 16 C 1.53190 * 108.77234 * 233.55197 * 15 14 12 17 17 C 1.53034 * 109.34203 * 305.41257 * 16 15 14 18 18 C 1.53047 * 109.53887 * 61.34808 * 17 16 15 19 19 C 1.46925 * 120.63121 * 185.72254 * 14 12 2 20 20 H 1.09004 * 109.58896 * 246.20474 * 19 14 12 21 21 C 1.53003 * 109.70208 * 6.55981 * 19 14 12 22 22 O 1.45196 * 109.47318 * 61.52603 * 21 19 14 23 23 C 1.34632 * 117.00112 * 180.02562 * 22 21 19 24 24 O 1.21513 * 120.00200 * 359.97438 * 23 22 21 25 25 N 1.34783 * 119.99992 * 179.97438 * 23 22 21 26 26 C 1.47026 * 125.64676 * 359.68985 * 25 23 22 27 27 C 1.54311 * 107.27297 * 180.97081 * 26 25 23 28 28 C 1.55158 * 102.86710 * 22.52385 * 27 26 25 29 29 C 1.47422 * 125.64722 * 180.02562 * 25 23 22 30 30 H 1.09006 * 109.47276 * 61.91754 * 1 2 3 31 31 H 1.09000 * 109.46708 * 181.91434 * 1 2 3 32 32 H 1.09002 * 109.47320 * 301.91774 * 1 2 3 33 33 H 0.97005 * 120.00519 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.56218 * 113.78110 * 15 14 12 35 35 H 1.08992 * 109.61176 * 353.35902 * 15 14 12 36 36 H 1.09005 * 109.49383 * 185.44521 * 16 15 14 37 37 H 1.09001 * 109.49852 * 65.38487 * 16 15 14 38 38 H 1.08995 * 109.46359 * 181.36830 * 17 16 15 39 39 H 1.08998 * 109.46070 * 301.34729 * 17 16 15 40 40 H 1.09000 * 109.49209 * 58.58661 * 18 17 16 41 41 H 1.09000 * 109.49733 * 178.65367 * 18 17 16 42 42 H 1.09000 * 109.47019 * 181.52774 * 21 19 14 43 43 H 1.09001 * 109.46867 * 301.52295 * 21 19 14 44 44 H 1.09000 * 109.87953 * 300.51454 * 26 25 23 45 45 H 1.08997 * 109.87843 * 61.68266 * 26 25 23 46 46 H 1.09006 * 110.92232 * 264.11423 * 27 26 25 47 47 H 1.08996 * 110.74543 * 140.85474 * 27 26 25 48 48 H 1.09002 * 111.00683 * 206.23053 * 28 27 26 49 49 H 1.09003 * 111.03268 * 82.39424 * 28 27 26 50 50 H 1.09003 * 110.36288 * 274.66689 * 29 25 23 51 51 H 1.08996 * 110.37151 * 36.99126 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5866 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.5970 -1.7785 1.1259 14 7 1.8540 -0.1586 2.4470 15 6 1.0639 1.0705 2.6026 16 6 1.9053 2.1053 3.3562 17 6 2.3926 1.4996 4.6744 18 6 3.2720 0.2812 4.3837 19 6 2.4458 -0.7746 3.6424 20 1 1.6534 -1.1425 4.2944 21 6 3.3510 -1.9370 3.2293 22 8 4.4311 -1.4374 2.3975 23 6 5.3227 -2.3396 1.9463 24 8 5.2019 -3.5125 2.2400 25 7 6.3493 -1.9420 1.1688 26 6 6.6101 -0.5620 0.7336 27 6 7.8710 -0.5925 -0.1555 28 6 7.9170 -2.0660 -0.6393 29 6 7.3927 -2.8197 0.6082 30 1 -0.3634 0.4838 -0.9067 31 1 -0.3633 -1.0271 0.0343 32 1 -0.3634 0.5433 0.8723 33 1 0.7094 1.1618 -3.4845 34 1 0.1585 0.8530 3.1693 35 1 0.7978 1.4610 1.6205 36 1 1.2982 2.9866 3.5632 37 1 2.7635 2.3896 2.7472 38 1 2.9712 2.2423 5.2234 39 1 1.5343 1.1932 5.2724 40 1 4.1173 0.5821 3.7648 41 1 3.6381 -0.1354 5.3220 42 1 3.7665 -2.4082 4.1200 43 1 2.7694 -2.6689 2.6688 44 1 5.7608 -0.1865 0.1629 45 1 6.7862 0.0733 1.6016 46 1 8.7617 -0.3488 0.4237 47 1 7.7641 0.0876 -1.0004 48 1 8.9371 -2.3672 -0.8779 49 1 7.2570 -2.2181 -1.4934 50 1 8.1965 -2.9625 1.3304 51 1 6.9657 -3.7801 0.3196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411372594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:44 Heat of formation + Delta-G solvation = -118.884156 kcal Electronic energy + Delta-G solvation = -32669.336250 eV Core-core repulsion = 28568.530266 eV Total energy + Delta-G solvation = -4100.805984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85129 -41.00929 -39.05349 -38.23980 -37.14873 -35.88085 -33.90627 -33.38394 -32.52439 -31.74994 -30.03884 -28.23865 -27.25759 -25.84592 -24.81981 -24.27293 -22.88792 -22.18995 -21.67249 -21.27277 -19.80035 -19.16343 -18.41835 -18.00015 -17.96300 -17.34837 -16.72417 -16.70518 -16.08200 -16.03334 -15.51801 -15.13916 -15.01100 -14.92621 -14.65774 -14.50476 -14.31442 -14.23662 -13.95465 -13.79212 -13.66381 -13.36950 -13.23098 -12.98087 -12.77193 -12.68084 -12.41194 -12.30846 -12.25958 -12.25471 -12.19098 -12.05307 -11.79596 -11.67388 -11.65185 -11.60189 -11.47659 -11.31711 -11.03202 -10.52855 -9.84092 -9.67112 -9.38581 -8.16254 -6.24838 1.16930 1.32411 1.35330 1.48284 1.85240 2.02222 2.20191 2.43353 2.98383 3.12855 3.58136 3.61364 3.69442 3.81580 4.00027 4.01117 4.16641 4.22112 4.24507 4.30730 4.33587 4.38627 4.41225 4.56649 4.62734 4.71143 4.74630 4.79313 4.81576 4.85660 4.92364 4.95812 4.99367 5.01363 5.05408 5.06994 5.15119 5.20420 5.23039 5.25938 5.34058 5.43894 5.47076 5.53464 5.71994 5.80248 5.98134 6.22918 6.39976 6.66331 6.83455 7.27658 7.41282 7.63869 8.89558 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007168 B = 0.006797 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3905.077875 B = 4118.421737 C = 6858.450527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.035 3.965 3 H 0.033 0.967 4 C -0.516 4.516 5 H 0.037 0.963 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.946 3.054 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.269 1.269 12 C 0.524 3.476 13 O -0.566 6.566 14 N -0.615 5.615 15 C 0.098 3.902 16 C -0.131 4.131 17 C -0.108 4.108 18 C -0.123 4.123 19 C 0.147 3.853 20 H 0.114 0.886 21 C 0.090 3.910 22 O -0.346 6.346 23 C 0.665 3.335 24 O -0.620 6.620 25 N -0.611 5.611 26 C 0.102 3.898 27 C -0.117 4.117 28 C -0.126 4.126 29 C 0.117 3.883 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.125 0.875 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 5.124 13.273 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.014 3.986 3 H 0.051 0.949 4 C -0.555 4.555 5 H 0.055 0.945 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.772 3.228 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.194 1.194 12 C 0.315 3.685 13 O -0.445 6.445 14 N -0.350 5.350 15 C -0.024 4.024 16 C -0.169 4.169 17 C -0.146 4.146 18 C -0.161 4.161 19 C 0.044 3.956 20 H 0.131 0.869 21 C 0.015 3.985 22 O -0.258 6.258 23 C 0.421 3.579 24 O -0.513 6.513 25 N -0.353 5.353 26 C -0.020 4.020 27 C -0.155 4.155 28 C -0.164 4.164 29 C -0.004 4.004 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.112 0.888 48 H 0.144 0.856 49 H 0.078 0.922 50 H 0.110 0.890 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.015 4.337 13.265 16.615 hybrid contribution -0.145 -0.865 -1.227 1.508 sum 8.870 3.472 12.038 15.351 Atomic orbital electron populations 1.21749 0.95454 0.98949 1.02211 1.18668 0.94892 0.95362 0.89665 0.94897 1.21190 1.31004 1.12037 0.91233 0.94468 1.25471 0.95334 0.95728 1.00971 1.69934 1.37306 1.23466 1.24074 0.85696 0.78431 0.78585 0.80077 1.21282 1.20053 1.19389 1.21444 0.76921 0.84979 0.85144 1.90502 1.44063 1.23801 1.86136 1.48229 1.53407 1.27697 1.05618 1.22116 0.94149 0.83830 1.02263 1.21917 0.99918 0.98283 0.96786 1.21478 0.99913 0.96479 0.96687 1.21906 0.98174 0.95986 1.00008 1.21558 0.94588 0.92489 0.86926 0.86862 1.23191 0.86313 0.97941 0.91009 1.86190 1.36552 1.38579 1.64449 1.17747 0.79248 0.82777 0.78141 1.90857 1.77670 1.18551 1.64265 1.47254 1.25787 1.11638 1.50600 1.22130 0.98995 0.81813 0.99064 1.22650 0.96195 0.97149 0.99492 1.22836 1.03396 0.94868 0.95304 1.22433 0.88554 0.93343 0.96057 0.91108 0.96606 0.92160 0.92639 0.89480 0.89931 0.88355 0.93443 0.89948 0.89941 0.93122 0.89032 0.91517 0.91440 0.94289 0.90457 0.87370 0.88832 0.85636 0.92245 0.88978 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.57 71.98 0.62 -5.25 16 2 C 0.04 1.80 1.80 -12.29 -0.02 1.78 16 3 H 0.03 1.76 7.51 -2.39 -0.02 1.74 16 4 C -0.52 -30.54 8.37 25.60 0.21 -30.32 16 5 H 0.04 2.42 6.79 -2.91 -0.02 2.40 16 6 C 0.02 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -51.12 11.31 21.45 0.24 -50.88 16 8 Si 0.95 45.92 29.54 68.60 2.03 47.95 16 9 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.52 24.58 6.48 87.66 0.57 25.14 16 13 O -0.57 -30.45 9.83 20.31 0.20 -30.25 16 14 N -0.61 -21.54 2.97 -795.01 -2.36 -23.90 16 15 C 0.10 2.69 5.22 86.36 0.45 3.14 16 16 C -0.13 -2.79 6.08 30.67 0.19 -2.61 16 17 C -0.11 -1.88 5.88 30.62 0.18 -1.70 16 18 C -0.12 -2.79 5.28 30.67 0.16 -2.63 16 19 C 0.15 4.32 3.28 44.98 0.15 4.46 16 20 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 21 C 0.09 3.37 4.18 71.98 0.30 3.67 16 22 O -0.35 -14.53 6.86 -47.66 -0.33 -14.86 16 23 C 0.66 29.32 8.18 129.79 1.06 30.38 16 24 O -0.62 -30.59 16.39 19.80 0.32 -30.26 16 25 N -0.61 -22.20 3.33 -942.16 -3.14 -25.34 16 26 C 0.10 3.10 6.89 86.72 0.60 3.69 16 27 C -0.12 -2.36 6.95 31.78 0.22 -2.14 16 28 C -0.13 -2.69 7.08 31.98 0.23 -2.46 16 29 C 0.12 3.29 6.91 86.85 0.60 3.89 16 30 H 0.07 3.63 6.02 -2.38 -0.01 3.62 16 31 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 2.27 5.40 -2.39 -0.01 2.26 16 33 H 0.26 14.05 8.31 -92.70 -0.77 13.27 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.65 4.42 -2.39 -0.01 2.64 16 36 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.42 7.47 -2.39 -0.02 1.40 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 43 H 0.07 3.10 5.97 -4.07 -0.02 3.08 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 46 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 Total: -1.00 -79.74 388.18 3.83 -75.91 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.90 Total: 20.75 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 5.96 Total: 30.87 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -5.25 Total: -100.11 kcal Atomic # 8 Polarization: -75.57 SS G_CDS: 0.20 Total: -75.37 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.74 3.83 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411372594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.972 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds