Wall clock time and date at job start Tue Mar 31 2020 21:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46862 * 2 1 4 4 C 1.50697 * 109.47248 * 119.99920 * 2 1 3 5 5 H 1.08004 * 120.00134 * 120.00073 * 4 2 1 6 6 C 1.37884 * 120.00286 * 300.00227 * 4 2 1 7 7 N 1.31509 * 119.99689 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46870 * 59.99832 * 8 6 4 10 10 H 1.48493 * 109.47187 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46799 * 300.00087 * 8 6 4 12 12 N 1.46496 * 109.47187 * 240.00236 * 2 1 3 13 13 C 1.46503 * 119.99958 * 299.99473 * 12 2 1 14 14 C 1.34775 * 120.00112 * 120.00098 * 12 2 1 15 15 O 1.21278 * 120.00172 * 359.97438 * 14 12 2 16 16 C 1.50709 * 119.99696 * 180.02562 * 14 12 2 17 17 H 1.08993 * 110.36315 * 320.88221 * 16 14 12 18 18 C 1.54390 * 110.40823 * 83.34754 * 16 14 12 19 19 H 1.08994 * 117.61550 * 233.99713 * 18 16 14 20 20 C 1.53001 * 118.12050 * 29.57465 * 18 16 14 21 21 C 1.54288 * 104.95684 * 94.91534 * 18 16 14 22 22 H 1.09001 * 121.81376 * 137.83078 * 21 18 16 23 23 C 1.54790 * 104.92454 * 359.80376 * 21 18 16 24 24 N 1.48146 * 104.41569 * 24.16618 * 23 21 18 25 25 C 1.34780 * 127.83766 * 140.36417 * 24 23 21 26 26 O 1.21508 * 120.00004 * 179.68188 * 25 24 23 27 27 O 1.34639 * 120.00005 * 359.67883 * 25 24 23 28 28 C 1.45194 * 116.99841 * 179.97438 * 27 25 24 29 29 C 1.52997 * 109.47339 * 60.00459 * 28 27 25 30 30 C 1.53006 * 109.47359 * 300.00176 * 28 27 25 31 31 C 1.52999 * 109.46968 * 180.02562 * 28 27 25 32 32 H 1.09003 * 109.47028 * 299.99665 * 1 2 3 33 33 H 1.08993 * 109.47357 * 60.00523 * 1 2 3 34 34 H 1.09010 * 109.46636 * 180.02562 * 1 2 3 35 35 H 0.96997 * 120.00299 * 179.97438 * 7 6 4 36 36 H 1.08999 * 109.47336 * 270.00066 * 13 12 2 37 37 H 1.09006 * 109.46782 * 30.00122 * 13 12 2 38 38 H 1.08998 * 109.47092 * 150.00010 * 13 12 2 39 39 H 1.09002 * 117.43964 * 199.19028 * 20 18 16 40 40 H 1.08999 * 117.44738 * 343.89227 * 20 18 16 41 41 H 1.08998 * 110.54514 * 265.42934 * 23 21 18 42 42 H 1.08999 * 110.46137 * 142.86073 * 23 21 18 43 43 H 1.09002 * 109.47153 * 59.99705 * 29 28 27 44 44 H 1.09001 * 109.46832 * 299.99896 * 29 28 27 45 45 H 1.09004 * 109.47261 * 179.97438 * 29 28 27 46 46 H 1.08993 * 109.46955 * 180.02562 * 30 28 27 47 47 H 1.09000 * 109.47050 * 300.00254 * 30 28 27 48 48 H 1.09001 * 109.47002 * 59.99988 * 30 28 27 49 49 H 1.09002 * 109.46716 * 299.99800 * 31 28 27 50 50 H 1.09000 * 109.47486 * 59.99718 * 31 28 27 51 51 H 1.09001 * 109.47362 * 180.02562 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6035 8 14 2.3214 -1.1203 4.0080 9 1 3.8065 -1.1209 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8259 -2.5202 4.0077 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2951 -0.7459 -3.3141 17 1 3.5738 -1.7715 -3.0729 18 6 2.2217 -0.7238 -4.4237 19 1 1.9270 -1.6779 -4.8605 20 6 1.2489 0.4564 -4.4626 21 6 2.5786 0.4959 -5.2987 22 1 2.5355 0.4545 -6.3870 23 6 3.8364 1.1077 -4.6358 24 7 4.4484 -0.0199 -3.8951 25 6 5.7578 -0.3151 -3.7727 26 8 6.1047 -1.2800 -3.1208 27 8 6.6814 0.4591 -4.3730 28 6 8.0725 0.0818 -4.1977 29 6 8.2928 -1.3265 -4.7534 30 6 8.4231 0.1031 -2.7085 31 6 8.9675 1.0716 -4.9461 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0278 0.0005 35 1 0.7089 1.1613 3.4844 36 1 2.4159 -2.7377 -0.9717 37 1 0.6905 -2.3002 -0.9846 38 1 1.6239 -2.2852 -2.5002 39 1 0.3200 0.3237 -5.0173 40 1 1.1776 1.0784 -3.5703 41 1 3.5567 1.9064 -3.9489 42 1 4.5236 1.4813 -5.3949 43 1 8.0431 -1.3417 -5.8143 44 1 7.6552 -2.0315 -4.2199 45 1 9.3372 -1.6096 -4.6223 46 1 9.4674 -0.1797 -2.5771 47 1 8.2661 1.1065 -2.3126 48 1 7.7854 -0.6018 -2.1750 49 1 8.7178 1.0567 -6.0070 50 1 8.8105 2.0749 -4.5499 51 1 10.0118 0.7881 -4.8150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411588436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:51 Heat of formation + Delta-G solvation = -82.377020 kcal Electronic energy + Delta-G solvation = -31863.957997 eV Core-core repulsion = 27764.735081 eV Total energy + Delta-G solvation = -4099.222916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37294 -41.31529 -39.36025 -37.88695 -37.09661 -35.39363 -34.85110 -34.25430 -31.86127 -29.69596 -28.41008 -28.30887 -27.70800 -27.59330 -27.29257 -23.97930 -23.34073 -22.11411 -21.49150 -20.56199 -19.74231 -19.16970 -18.54312 -17.98189 -17.68221 -17.34161 -17.07904 -16.80944 -16.32009 -16.10087 -15.56657 -15.46477 -15.07169 -14.90529 -14.48367 -14.43298 -14.11521 -13.65695 -13.56599 -13.48760 -13.37167 -13.18899 -13.05485 -12.95239 -12.92719 -12.89584 -12.79448 -12.75636 -12.62671 -12.57100 -12.47713 -12.31999 -12.19097 -12.15879 -11.58831 -11.44738 -11.31928 -11.21070 -10.89046 -10.85984 -10.55913 -9.77729 -9.36740 -8.17886 -6.34251 0.80775 1.36954 1.39675 1.46789 1.58696 1.69720 2.23665 2.38250 2.51387 2.83580 3.09535 3.37552 3.52659 3.55501 3.71815 3.76564 3.83193 3.91397 4.04227 4.15397 4.29363 4.40941 4.46177 4.58145 4.62290 4.65546 4.66432 4.72814 4.75354 4.80768 4.83687 4.85248 4.86945 4.90289 4.93507 5.00751 5.05696 5.08968 5.10732 5.23607 5.24646 5.31427 5.39635 5.43997 5.60711 5.63820 6.02016 6.14245 6.32303 6.72626 6.75724 7.12406 7.25739 7.41855 8.85849 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003825 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.568114 B = 7317.742130 C = 8850.610749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.261 1.261 12 N -0.591 5.591 13 C 0.080 3.920 14 C 0.495 3.505 15 O -0.591 6.591 16 C 0.159 3.841 17 H 0.115 0.885 18 C -0.158 4.158 19 H 0.171 0.829 20 C -0.139 4.139 21 C -0.151 4.151 22 H 0.169 0.831 23 C 0.121 3.879 24 N -0.593 5.593 25 C 0.671 3.329 26 O -0.593 6.593 27 O -0.362 6.362 28 C 0.122 3.878 29 C -0.176 4.176 30 C -0.183 4.183 31 C -0.132 4.132 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -4.454 -21.501 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.185 1.185 12 N -0.322 5.322 13 C -0.062 4.062 14 C 0.282 3.718 15 O -0.473 6.473 16 C 0.053 3.947 17 H 0.133 0.867 18 C -0.177 4.177 19 H 0.188 0.812 20 C -0.177 4.177 21 C -0.169 4.169 22 H 0.186 0.814 23 C -0.001 4.001 24 N -0.332 5.332 25 C 0.427 3.573 26 O -0.484 6.484 27 O -0.276 6.276 28 C 0.086 3.914 29 C -0.233 4.233 30 C -0.240 4.240 31 C -0.189 4.189 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.672 -4.060 -21.046 22.766 hybrid contribution 0.378 -0.095 1.850 1.890 sum 8.050 -4.155 -19.197 21.227 Atomic orbital electron populations 1.21842 0.96453 1.00290 1.00178 1.18506 0.91990 0.91845 0.81243 0.97610 1.21547 1.32042 1.13069 0.91544 0.92911 1.25667 0.95026 0.95627 1.01773 1.69995 1.37100 1.23629 1.24514 0.85588 0.78137 0.79283 0.78493 1.20946 1.20384 1.18504 1.48161 1.48704 1.13290 1.22007 1.21869 1.01703 0.80300 1.02367 1.21227 0.78538 0.86972 0.85049 1.90603 1.59577 1.19182 1.77888 1.21294 0.85820 0.96420 0.91163 0.86674 1.23574 0.99548 0.97474 0.97093 0.81215 1.23822 0.94283 0.98387 1.01161 1.24537 0.93186 0.99728 0.99495 0.81377 1.22168 0.94505 0.88128 0.95261 1.47701 1.01447 1.31273 1.52792 1.17515 0.80981 0.80858 0.77906 1.90889 1.80091 1.31609 1.45800 1.86307 1.18106 1.53627 1.69593 1.22525 0.75103 0.97413 0.96390 1.22448 1.04261 0.95009 1.01556 1.22502 1.03890 1.02134 0.95520 1.21874 0.98648 0.97742 1.00621 0.91474 0.95496 0.93197 0.92541 0.93564 0.90155 0.88522 0.83720 0.91856 0.92071 0.87578 0.91086 0.92350 0.88711 0.88307 0.93074 0.92987 0.90371 0.91809 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.18 8.95 71.98 0.64 -5.54 16 2 C 0.27 14.18 2.63 44.25 0.12 14.29 16 3 H 0.01 0.38 6.90 -2.39 -0.02 0.36 16 4 C -0.54 -30.85 8.37 25.60 0.21 -30.64 16 5 H 0.05 2.98 7.65 -2.91 -0.02 2.96 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -53.55 11.32 21.45 0.24 -53.31 16 8 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 12 N -0.59 -25.89 2.75 -826.79 -2.28 -28.17 16 13 C 0.08 2.63 9.16 127.77 1.17 3.81 16 14 C 0.50 21.42 5.40 87.66 0.47 21.89 16 15 O -0.59 -30.81 13.83 -3.02 -0.04 -30.85 16 16 C 0.16 5.19 2.42 44.40 0.11 5.30 16 17 H 0.12 3.70 6.95 -2.39 -0.02 3.68 16 18 C -0.16 -3.42 5.83 -9.88 -0.06 -3.48 16 19 H 0.17 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.14 -3.08 9.82 32.04 0.31 -2.76 16 21 C -0.15 -2.98 7.32 -8.30 -0.06 -3.04 16 22 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 23 C 0.12 3.36 6.44 86.67 0.56 3.92 16 24 N -0.59 -19.87 2.81 -917.88 -2.58 -22.45 16 25 C 0.67 24.02 8.01 129.79 1.04 25.06 16 26 O -0.59 -23.83 12.15 19.82 0.24 -23.59 16 27 O -0.36 -11.03 9.41 -55.48 -0.52 -11.55 16 28 C 0.12 2.93 1.13 -10.79 -0.01 2.92 16 29 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 30 C -0.18 -4.94 8.37 71.98 0.60 -4.34 16 31 C -0.13 -2.08 8.85 71.98 0.64 -1.44 16 32 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 2.15 6.66 -2.38 -0.02 2.13 16 35 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 2.57 6.43 -2.38 -0.02 2.56 16 38 H 0.10 2.32 5.92 -2.39 -0.01 2.30 16 39 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.01 6.79 -2.39 -0.02 2.00 16 41 H 0.06 2.14 6.64 -2.39 -0.02 2.12 16 42 H 0.11 2.44 7.87 -2.39 -0.02 2.42 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 45 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 1.81 5.88 -2.39 -0.01 1.79 16 49 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -78.98 395.16 4.82 -74.16 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.92 Total: 24.76 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 6.80 Total: 24.30 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -4.61 Total: -103.92 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -0.32 Total: -65.99 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.98 4.82 -74.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411588436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.213 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds