Wall clock time and date at job start Tue Mar 31 2020 21:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 N 1.46500 * 109.47007 * 119.99601 * 2 1 3 13 13 C 1.34775 * 120.00463 * 274.99808 * 12 2 1 14 14 O 1.21280 * 119.99342 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00345 * 180.02562 * 13 12 2 16 16 H 1.08996 * 115.57499 * 325.52001 * 15 13 12 17 17 C 1.52123 * 117.54098 * 111.39489 * 15 13 12 18 18 H 1.09000 * 115.84513 * 0.94809 * 17 15 13 19 19 C 1.51801 * 120.46623 * 216.55404 * 17 15 13 20 20 N 1.45518 * 111.27683 * 302.02182 * 19 17 15 21 21 C 1.34781 * 118.81681 * 140.09101 * 20 19 17 22 22 O 1.21515 * 119.99900 * 0.02562 * 21 20 19 23 23 O 1.34631 * 120.00010 * 179.97438 * 21 20 19 24 24 C 1.45209 * 117.00108 * 180.02562 * 23 21 20 25 25 C 1.53004 * 109.46731 * 60.00222 * 24 23 21 26 26 C 1.52999 * 109.47243 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.47055 * 300.00564 * 24 23 21 28 28 C 1.45310 * 122.36625 * 320.09549 * 20 19 17 29 29 C 1.51718 * 111.99496 * 55.92371 * 28 20 19 30 30 C 1.51970 * 60.77041 * 107.36323 * 17 15 13 31 31 H 1.08995 * 116.96957 * 253.24325 * 30 17 15 32 32 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 35 35 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 36 36 H 0.97002 * 120.00030 * 94.99975 * 12 2 1 37 37 H 1.08996 * 109.12065 * 62.49108 * 19 17 15 38 38 H 1.09005 * 109.11329 * 181.56153 * 19 17 15 39 39 H 1.08998 * 109.46905 * 60.00481 * 25 24 23 40 40 H 1.08996 * 109.46935 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.47515 * 300.00535 * 25 24 23 42 42 H 1.09003 * 109.47148 * 59.99844 * 26 24 23 43 43 H 1.09001 * 109.46810 * 180.02562 * 26 24 23 44 44 H 1.09003 * 109.46996 * 300.00057 * 26 24 23 45 45 H 1.09001 * 109.47113 * 59.99974 * 27 24 23 46 46 H 1.09001 * 109.47186 * 179.97438 * 27 24 23 47 47 H 1.08996 * 109.46803 * 299.99440 * 27 24 23 48 48 H 1.08999 * 108.97661 * 295.27269 * 28 20 19 49 49 H 1.09006 * 108.90752 * 176.52349 * 28 20 19 50 50 H 1.08999 * 108.87967 * 197.89019 * 29 28 20 51 51 H 1.08997 * 108.88406 * 79.42363 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1464 -2.2873 -3.6036 10 1 1.1661 -1.5870 -4.8160 11 1 3.1466 -0.1877 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1584 2.4116 15 6 2.6499 -0.7284 3.5875 16 1 2.3510 -1.7722 3.6835 17 6 4.0235 -0.3388 4.1126 18 1 4.5385 0.4466 3.5593 19 6 4.9458 -1.3874 4.7077 20 7 4.3185 -2.0654 5.8321 21 6 4.4957 -3.3943 5.9704 22 8 5.1698 -4.0045 5.1643 23 8 3.9266 -4.0456 7.0022 24 6 4.1606 -5.4761 7.0885 25 6 5.6624 -5.7405 7.2135 26 6 3.4395 -6.0377 8.3155 27 6 3.6260 -6.1573 5.8272 28 6 3.5078 -1.3613 6.8112 29 6 2.3648 -0.6031 6.1628 30 6 2.7854 0.0959 4.8791 31 1 2.5123 1.1495 4.8205 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 0.7082 1.1606 -3.4844 36 1 2.2490 -1.6317 1.1527 37 1 5.1935 -2.1215 3.9411 38 1 5.8622 -0.9050 5.0478 39 1 6.0432 -5.2552 8.1121 40 1 5.8380 -6.8143 7.2788 41 1 6.1758 -5.3405 6.3392 42 1 2.3696 -5.8492 8.2261 43 1 3.6155 -7.1114 8.3805 44 1 3.8200 -5.5524 9.2143 45 1 4.1395 -5.7573 4.9528 46 1 3.8020 -7.2311 5.8918 47 1 2.5562 -5.9689 5.7382 48 1 4.1387 -0.6564 7.3527 49 1 3.0984 -2.0845 7.5165 50 1 1.9930 0.1429 6.8652 51 1 1.5607 -1.3031 5.9361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412544783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:25 Heat of formation + Delta-G solvation = -99.776078 kcal Electronic energy + Delta-G solvation = -30476.454777 eV Core-core repulsion = 26376.477382 eV Total energy + Delta-G solvation = -4099.977396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29541 -39.93881 -38.32696 -36.94094 -35.17525 -34.59845 -33.85134 -32.33951 -31.81560 -29.10373 -27.70213 -27.62505 -27.35159 -25.25691 -24.63136 -23.25271 -22.43232 -20.49105 -20.07100 -19.36992 -18.69552 -18.16353 -17.23020 -16.93150 -16.39930 -15.85297 -15.64846 -15.34037 -14.91244 -14.83025 -14.55918 -14.21015 -13.93900 -13.83182 -13.65353 -13.45383 -13.08280 -12.85552 -12.59597 -12.44011 -12.40925 -12.17129 -12.15955 -12.06047 -11.96923 -11.69903 -11.67052 -11.52398 -11.10825 -10.99698 -10.94279 -10.74224 -10.61099 -10.30574 -10.24281 -10.21253 -10.03052 -9.96713 -9.05187 -8.99023 -8.89395 -8.54393 -7.89178 -6.11620 -4.20609 1.92650 2.63899 3.06201 3.24586 3.32370 3.35679 3.54635 3.84446 4.02418 4.35410 4.43185 4.47884 4.62095 4.65260 4.71877 4.78063 4.86674 4.98151 5.06107 5.16950 5.18737 5.20866 5.26118 5.35679 5.40371 5.47133 5.51914 5.56762 5.59395 5.61547 5.68865 5.70423 5.75332 5.91288 6.01205 6.03701 6.08772 6.23511 6.27471 6.37119 6.83219 6.97690 7.11957 7.16066 7.47301 7.57965 7.71069 7.92603 8.14141 8.15830 8.69541 8.79736 9.15109 9.47211 10.94454 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.002615 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.229554 B =10706.711072 C =11829.278543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.530 3.470 14 O -0.557 6.557 15 C -0.176 4.176 16 H 0.115 0.885 17 C -0.131 4.131 18 H 0.122 0.878 19 C 0.157 3.843 20 N -0.586 5.586 21 C 0.649 3.351 22 O -0.565 6.565 23 O -0.363 6.363 24 C 0.135 3.865 25 C -0.183 4.183 26 C -0.140 4.140 27 C -0.185 4.185 28 C 0.113 3.887 29 C -0.105 4.105 30 C -0.113 4.113 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.389 0.611 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -10.986 23.740 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.314 3.686 14 O -0.436 6.436 15 C -0.198 4.198 16 H 0.133 0.867 17 C -0.150 4.150 18 H 0.140 0.860 19 C 0.036 3.964 20 N -0.326 5.326 21 C 0.404 3.596 22 O -0.454 6.454 23 O -0.278 6.278 24 C 0.099 3.901 25 C -0.240 4.240 26 C -0.197 4.197 27 C -0.242 4.242 28 C -0.010 4.010 29 C -0.144 4.144 30 C -0.132 4.132 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.103 0.897 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.355 -10.268 23.372 26.307 hybrid contribution 0.259 -0.956 -1.031 1.430 sum 6.614 -11.225 22.340 25.862 Atomic orbital electron populations 1.22079 0.98492 0.99096 1.00888 1.18751 0.91011 0.93944 0.80045 0.93429 1.21269 1.32307 1.13182 0.90311 0.92001 1.24894 0.94822 0.94963 0.99079 1.69914 1.35961 1.22539 1.23750 0.86393 0.78612 0.79569 0.82542 1.19686 1.20876 1.20868 1.46479 1.64573 1.13640 1.10330 1.19457 0.78419 0.86855 0.83838 1.90640 1.51820 1.16093 1.85076 1.22557 1.01480 1.00519 0.95198 0.86696 1.22023 0.89760 1.00928 1.02305 0.86045 1.20516 0.93717 0.94546 0.87605 1.46210 1.53088 1.04384 1.28868 1.18037 0.78689 0.82666 0.80212 1.90907 1.43452 1.66203 1.44835 1.86280 1.70173 1.24451 1.46876 1.22078 0.96175 0.75090 0.96788 1.22511 0.94798 1.02691 1.04008 1.21859 1.01031 1.00910 0.95946 1.22523 1.01871 1.01071 0.98707 1.21033 0.92769 0.96970 0.90197 1.21035 0.97848 0.99518 0.95965 1.22017 1.00170 1.00311 0.90708 0.86122 0.89123 0.95503 0.96677 0.92646 0.77854 0.87963 0.90557 0.92281 0.91184 0.89317 0.91424 0.90167 0.91545 0.89255 0.91167 0.92083 0.91325 0.88752 0.89684 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.26 6.85 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.55 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.70 -15.10 5.07 -54.93 -0.28 -15.38 16 13 C 0.53 10.70 7.57 -10.99 -0.08 10.62 16 14 O -0.56 -13.31 15.91 5.56 0.09 -13.22 16 15 C -0.18 -2.63 5.60 -91.80 -0.51 -3.14 16 16 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 17 C -0.13 -1.63 5.68 -92.20 -0.52 -2.16 16 18 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 19 C 0.16 1.74 6.33 -5.18 -0.03 1.71 16 20 N -0.59 -6.34 2.97 -182.73 -0.54 -6.88 16 21 C 0.65 7.92 7.65 54.06 0.41 8.33 16 22 O -0.56 -8.07 11.18 -19.28 -0.22 -8.29 16 23 O -0.36 -3.88 8.29 -40.30 -0.33 -4.21 16 24 C 0.14 1.21 1.13 -90.62 -0.10 1.11 16 25 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 26 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 27 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 28 C 0.11 0.98 6.32 -5.33 -0.03 0.95 16 29 C -0.11 -0.99 5.97 -27.84 -0.17 -1.16 16 30 C -0.11 -1.41 5.71 -91.18 -0.52 -1.93 16 31 H 0.12 1.68 7.64 -51.93 -0.40 1.28 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.39 7.43 8.54 -40.82 -0.35 7.08 16 37 H 0.10 1.27 6.99 -51.93 -0.36 0.91 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.76 6.63 -51.93 -0.34 0.41 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -32.15 402.30 -9.10 -41.25 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.65 Total: 7.90 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.84 Total: 1.41 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.19 Total: -46.80 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.46 Total: -25.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.15 -9.10 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412544783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.522 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds