Wall clock time and date at job start Tue Mar 31 2020 21:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47361 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47264 * 120.00115 * 8 6 4 11 11 H 1.48500 * 109.46969 * 239.99720 * 8 6 4 12 12 N 1.46500 * 109.47007 * 119.99601 * 2 1 3 13 13 C 1.34775 * 120.00463 * 274.99808 * 12 2 1 14 14 O 1.21280 * 119.99342 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00345 * 180.02562 * 13 12 2 16 16 H 1.08996 * 115.57499 * 325.52001 * 15 13 12 17 17 C 1.52123 * 117.54098 * 111.39489 * 15 13 12 18 18 H 1.09000 * 115.84513 * 0.94809 * 17 15 13 19 19 C 1.51801 * 120.46623 * 216.55404 * 17 15 13 20 20 N 1.45518 * 111.27683 * 302.02182 * 19 17 15 21 21 C 1.34781 * 118.81681 * 140.09101 * 20 19 17 22 22 O 1.21515 * 119.99900 * 0.02562 * 21 20 19 23 23 O 1.34631 * 120.00010 * 179.97438 * 21 20 19 24 24 C 1.45209 * 117.00108 * 180.02562 * 23 21 20 25 25 C 1.53004 * 109.46731 * 60.00222 * 24 23 21 26 26 C 1.52999 * 109.47243 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.47055 * 300.00564 * 24 23 21 28 28 C 1.45310 * 122.36625 * 320.09549 * 20 19 17 29 29 C 1.51718 * 111.99496 * 55.92371 * 28 20 19 30 30 C 1.51970 * 60.77041 * 107.36323 * 17 15 13 31 31 H 1.08995 * 116.96957 * 253.24325 * 30 17 15 32 32 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 35 35 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 36 36 H 0.97002 * 120.00030 * 94.99975 * 12 2 1 37 37 H 1.08996 * 109.12065 * 62.49108 * 19 17 15 38 38 H 1.09005 * 109.11329 * 181.56153 * 19 17 15 39 39 H 1.08998 * 109.46905 * 60.00481 * 25 24 23 40 40 H 1.08996 * 109.46935 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.47515 * 300.00535 * 25 24 23 42 42 H 1.09003 * 109.47148 * 59.99844 * 26 24 23 43 43 H 1.09001 * 109.46810 * 180.02562 * 26 24 23 44 44 H 1.09003 * 109.46996 * 300.00057 * 26 24 23 45 45 H 1.09001 * 109.47113 * 59.99974 * 27 24 23 46 46 H 1.09001 * 109.47186 * 179.97438 * 27 24 23 47 47 H 1.08996 * 109.46803 * 299.99440 * 27 24 23 48 48 H 1.08999 * 108.97661 * 295.27269 * 28 20 19 49 49 H 1.09006 * 108.90752 * 176.52349 * 28 20 19 50 50 H 1.08999 * 108.87967 * 197.89019 * 29 28 20 51 51 H 1.08997 * 108.88406 * 79.42363 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1464 -2.2873 -3.6036 10 1 1.1661 -1.5870 -4.8160 11 1 3.1466 -0.1877 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1584 2.4116 15 6 2.6499 -0.7284 3.5875 16 1 2.3510 -1.7722 3.6835 17 6 4.0235 -0.3388 4.1126 18 1 4.5385 0.4466 3.5593 19 6 4.9458 -1.3874 4.7077 20 7 4.3185 -2.0654 5.8321 21 6 4.4957 -3.3943 5.9704 22 8 5.1698 -4.0045 5.1643 23 8 3.9266 -4.0456 7.0022 24 6 4.1606 -5.4761 7.0885 25 6 5.6624 -5.7405 7.2135 26 6 3.4395 -6.0377 8.3155 27 6 3.6260 -6.1573 5.8272 28 6 3.5078 -1.3613 6.8112 29 6 2.3648 -0.6031 6.1628 30 6 2.7854 0.0959 4.8791 31 1 2.5123 1.1495 4.8205 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 0.7082 1.1606 -3.4844 36 1 2.2490 -1.6317 1.1527 37 1 5.1935 -2.1215 3.9411 38 1 5.8622 -0.9050 5.0478 39 1 6.0432 -5.2552 8.1121 40 1 5.8380 -6.8143 7.2788 41 1 6.1758 -5.3405 6.3392 42 1 2.3696 -5.8492 8.2261 43 1 3.6155 -7.1114 8.3805 44 1 3.8200 -5.5524 9.2143 45 1 4.1395 -5.7573 4.9528 46 1 3.8020 -7.2311 5.8918 47 1 2.5562 -5.9689 5.7382 48 1 4.1387 -0.6564 7.3527 49 1 3.0984 -2.0845 7.5165 50 1 1.9930 0.1429 6.8652 51 1 1.5607 -1.3031 5.9361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412544783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:24 Heat of formation + Delta-G solvation = -119.443561 kcal Electronic energy + Delta-G solvation = -30477.307623 eV Core-core repulsion = 26376.477382 eV Total energy + Delta-G solvation = -4100.830242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18848 -41.14821 -39.64683 -37.91253 -36.76468 -35.88736 -34.64704 -34.32603 -32.65563 -31.03738 -28.42278 -28.32360 -28.24227 -27.38166 -25.61766 -24.50543 -23.36003 -22.22498 -21.06222 -20.87329 -19.60991 -19.31348 -18.60943 -17.76034 -17.60634 -17.29810 -17.15688 -16.50652 -16.29710 -15.88694 -15.58532 -15.42633 -15.13642 -15.07111 -14.54814 -14.46709 -14.43830 -14.11028 -13.79754 -13.70338 -13.34947 -13.18558 -13.05601 -13.02410 -12.91720 -12.85859 -12.81571 -12.79669 -12.76129 -12.43060 -12.32189 -12.24996 -12.15390 -11.80113 -11.35497 -11.24820 -11.14876 -11.05135 -10.99772 -10.70890 -10.58277 -9.81686 -9.73224 -8.20966 -6.38545 1.12010 1.41743 1.42713 1.55081 1.59143 1.74976 2.30058 2.51074 2.69090 2.84795 3.09310 3.58203 3.63971 3.71695 3.79088 3.84289 3.95099 3.99275 4.11336 4.19988 4.22767 4.39029 4.48056 4.62143 4.65482 4.68648 4.72418 4.78850 4.80968 4.85806 4.87828 4.89634 4.90163 4.92753 4.96988 5.05196 5.12686 5.16704 5.30616 5.32612 5.36691 5.39457 5.46778 5.57075 5.58149 5.64808 5.86301 6.06362 6.27290 6.69132 6.92611 7.27169 7.28716 7.50605 8.85674 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.002615 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.229554 B =10706.711072 C =11829.278543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.703 5.703 13 C 0.527 3.473 14 O -0.598 6.598 15 C -0.190 4.190 16 H 0.126 0.874 17 C -0.114 4.114 18 H 0.114 0.886 19 C 0.163 3.837 20 N -0.585 5.585 21 C 0.645 3.355 22 O -0.591 6.591 23 O -0.362 6.362 24 C 0.126 3.874 25 C -0.179 4.179 26 C -0.135 4.135 27 C -0.182 4.182 28 C 0.113 3.887 29 C -0.100 4.100 30 C -0.096 4.096 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.110 0.890 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 -12.897 25.762 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.207 1.207 12 N -0.351 5.351 13 C 0.315 3.685 14 O -0.481 6.481 15 C -0.211 4.211 16 H 0.144 0.856 17 C -0.134 4.134 18 H 0.132 0.868 19 C 0.042 3.958 20 N -0.325 5.325 21 C 0.400 3.600 22 O -0.482 6.482 23 O -0.276 6.276 24 C 0.089 3.911 25 C -0.236 4.236 26 C -0.192 4.192 27 C -0.239 4.239 28 C -0.009 4.009 29 C -0.138 4.138 30 C -0.115 4.115 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.024 -12.205 25.434 29.072 hybrid contribution 0.046 -0.326 -1.627 1.660 sum 7.070 -12.531 23.807 27.817 Atomic orbital electron populations 1.21899 0.98277 0.99390 0.99648 1.18354 0.91137 0.91865 0.81888 0.98318 1.21557 1.32617 1.13508 0.90893 0.91190 1.25803 0.94832 0.95589 1.02306 1.70052 1.36907 1.23906 1.24629 0.85285 0.78153 0.78501 0.78333 1.18601 1.20234 1.20727 1.46286 1.64859 1.14169 1.09768 1.20274 0.77099 0.86442 0.84688 1.90612 1.53441 1.18150 1.85874 1.22372 1.04006 1.00789 0.93899 0.85645 1.22024 0.89097 1.00796 1.01465 0.86769 1.20441 0.93985 0.93748 0.87629 1.46297 1.53127 1.04130 1.28946 1.18212 0.78547 0.82980 0.80263 1.90904 1.44615 1.66881 1.45824 1.86289 1.69819 1.25420 1.46097 1.22391 0.96729 0.74243 0.97696 1.22459 0.94378 1.03818 1.02924 1.21874 1.00696 1.01965 0.94637 1.22488 1.01312 1.02213 0.97919 1.21200 0.92554 0.97382 0.89729 1.21068 0.98065 0.99928 0.94732 1.22139 0.99127 0.99407 0.90839 0.87603 0.91304 0.94245 0.96881 0.92446 0.76359 0.89409 0.88312 0.91626 0.89366 0.92070 0.91300 0.88246 0.90799 0.92173 0.89293 0.92242 0.89245 0.87611 0.87148 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.55 2.56 44.25 0.11 14.66 16 3 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 4 C -0.55 -29.92 8.73 25.60 0.22 -29.70 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 8 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.70 -30.93 5.07 -446.10 -2.26 -33.19 16 13 C 0.53 21.87 7.57 87.66 0.66 22.54 16 14 O -0.60 -29.76 15.91 -3.03 -0.05 -29.81 16 15 C -0.19 -5.60 5.60 -11.56 -0.06 -5.66 16 16 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 17 C -0.11 -2.76 5.68 -11.82 -0.07 -2.82 16 18 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 19 C 0.16 3.39 6.33 86.17 0.55 3.93 16 20 N -0.59 -11.54 2.97 -962.43 -2.86 -14.40 16 21 C 0.64 14.95 7.65 129.79 0.99 15.94 16 22 O -0.59 -16.82 11.18 19.79 0.22 -16.60 16 23 O -0.36 -7.08 8.29 -55.40 -0.46 -7.54 16 24 C 0.13 2.02 1.13 -10.79 -0.01 2.01 16 25 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 26 C -0.13 -1.30 8.85 71.98 0.64 -0.66 16 27 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 28 C 0.11 1.61 6.32 86.18 0.54 2.16 16 29 C -0.10 -1.61 5.97 29.87 0.18 -1.43 16 30 C -0.10 -2.27 5.71 -11.16 -0.06 -2.34 16 31 H 0.11 2.89 7.64 -2.39 -0.02 2.88 16 32 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 33 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.40 15.49 8.54 -92.71 -0.79 14.70 16 37 H 0.09 2.14 6.99 -2.39 -0.02 2.12 16 38 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 48 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.11 1.34 6.63 -2.38 -0.02 1.32 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 Total: -1.00 -72.30 402.30 3.01 -69.29 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.13 Total: 31.72 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.01 Total: 8.72 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.88 Total: -100.72 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.29 Total: -53.94 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.30 3.01 -69.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412544783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.158 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds