Wall clock time and date at job start Tue Mar 31 2020 21:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47292 * 2 1 4 4 C 1.50694 * 109.47502 * 120.00034 * 2 1 3 5 5 H 1.08003 * 120.00507 * 119.99367 * 4 2 1 6 6 C 1.37878 * 119.99825 * 300.00104 * 4 2 1 7 7 N 1.31517 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46585 * 90.00458 * 8 6 4 10 10 H 1.48498 * 109.47006 * 210.00064 * 8 6 4 11 11 H 1.48493 * 109.47326 * 330.00204 * 8 6 4 12 12 C 1.50707 * 109.47195 * 239.99868 * 2 1 3 13 13 O 1.21274 * 119.99987 * 274.98411 * 12 2 1 14 14 N 1.34778 * 119.99998 * 94.98391 * 12 2 1 15 15 C 1.47460 * 125.60967 * 356.07058 * 14 12 2 16 16 C 1.54859 * 104.56332 * 204.56527 * 15 14 12 17 17 C 1.55127 * 101.77394 * 322.24497 * 16 15 14 18 18 H 1.08996 * 113.46105 * 158.33738 * 17 16 15 19 19 C 1.54042 * 108.26077 * 286.10302 * 17 16 15 20 20 N 1.46704 * 106.82918 * 135.80654 * 19 17 16 21 21 C 1.34783 * 125.32218 * 161.81240 * 20 19 17 22 22 O 1.21509 * 119.99608 * 0.02562 * 21 20 19 23 23 O 1.34625 * 119.99939 * 180.02562 * 21 20 19 24 24 C 1.45206 * 117.00188 * 180.02562 * 23 21 20 25 25 C 1.53003 * 109.46832 * 59.99646 * 24 23 21 26 26 C 1.52996 * 109.47152 * 179.97438 * 24 23 21 27 27 C 1.53000 * 109.46713 * 300.00009 * 24 23 21 28 28 C 1.46626 * 109.35651 * 341.82181 * 20 19 17 29 29 C 1.46723 * 125.59135 * 174.87551 * 14 12 2 30 30 H 1.09003 * 111.33173 * 56.13059 * 29 14 12 31 31 H 1.08998 * 109.47363 * 305.15051 * 1 2 3 32 32 H 1.09011 * 109.47452 * 65.14558 * 1 2 3 33 33 H 1.09002 * 109.47593 * 185.14088 * 1 2 3 34 34 H 0.97005 * 119.99849 * 180.02562 * 7 6 4 35 35 H 1.08997 * 110.97004 * 85.57212 * 15 14 12 36 36 H 1.09006 * 110.01023 * 323.07409 * 15 14 12 37 37 H 1.08998 * 110.96778 * 204.12945 * 16 15 14 38 38 H 1.09002 * 111.00040 * 80.37904 * 16 15 14 39 39 H 1.08995 * 109.98859 * 255.15332 * 19 17 16 40 40 H 1.08994 * 109.98859 * 16.46703 * 19 17 16 41 41 H 1.09003 * 109.46671 * 60.00100 * 25 24 23 42 42 H 1.08998 * 109.46701 * 180.02562 * 25 24 23 43 43 H 1.08993 * 109.47373 * 300.00416 * 25 24 23 44 44 H 1.08995 * 109.47270 * 60.00344 * 26 24 23 45 45 H 1.09003 * 109.46887 * 180.02562 * 26 24 23 46 46 H 1.08998 * 109.47429 * 299.99731 * 26 24 23 47 47 H 1.09004 * 109.47348 * 60.00225 * 27 24 23 48 48 H 1.09003 * 109.46680 * 179.97438 * 27 24 23 49 49 H 1.08995 * 109.47420 * 299.99479 * 27 24 23 50 50 H 1.09000 * 109.75739 * 241.62435 * 28 20 19 51 51 H 1.08999 * 109.76391 * 120.92495 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5456 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4860 -2.5661 3.7120 12 6 2.0323 -0.7105 -1.2305 13 8 2.1484 -1.9176 -1.2288 14 7 2.3525 -0.0042 -2.3329 15 6 2.1831 1.4511 -2.4995 16 6 2.0756 1.6578 -4.0305 17 6 3.0974 0.6190 -4.5626 18 1 2.9229 0.3303 -5.5991 19 6 4.5160 1.1529 -4.2880 20 7 5.2990 0.0283 -3.7642 21 6 6.6449 -0.0324 -3.7237 22 8 7.3077 0.8957 -4.1430 23 8 7.2547 -1.1211 -3.2186 24 6 8.7067 -1.1171 -3.2061 25 6 9.2062 0.0605 -2.3666 26 6 9.2151 -2.4268 -2.6000 27 6 9.2287 -0.9806 -4.6378 28 6 4.3886 -1.0196 -3.2919 29 6 2.9499 -0.5535 -3.5552 30 1 2.3409 -1.3582 -3.9672 31 1 -0.3634 0.5916 0.8402 32 1 -0.3634 0.4320 -0.9326 33 1 -0.3634 -1.0235 0.0921 34 1 0.7095 1.1619 3.4844 35 1 3.0424 1.9918 -2.1030 36 1 1.2674 1.7788 -2.0072 37 1 2.3680 2.6703 -4.3088 38 1 1.0699 1.4328 -4.3854 39 1 4.9619 1.5188 -5.2128 40 1 4.4761 1.9545 -3.5505 41 1 8.8343 -0.0368 -1.3467 42 1 10.2962 0.0637 -2.3576 43 1 8.8440 0.9936 -2.7979 44 1 8.8593 -3.2659 -3.1977 45 1 10.3051 -2.4235 -2.5902 46 1 8.8433 -2.5236 -1.5800 47 1 8.8665 -0.0474 -5.0691 48 1 10.3186 -0.9772 -4.6283 49 1 8.8729 -1.8195 -5.2358 50 1 4.5341 -1.1801 -2.2236 51 1 4.5807 -1.9461 -3.8330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451398152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:50 Heat of formation + Delta-G solvation = -109.802817 kcal Electronic energy + Delta-G solvation = -31503.073823 eV Core-core repulsion = 27402.661635 eV Total energy + Delta-G solvation = -4100.412188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10528 -40.16285 -38.03311 -36.84360 -35.07183 -33.96682 -33.73667 -31.82755 -30.66646 -29.51613 -27.55378 -27.48191 -27.42783 -25.21341 -24.61552 -23.47450 -21.88173 -21.37983 -20.14248 -19.47703 -18.51622 -17.84230 -16.83437 -16.57779 -16.29983 -15.97358 -15.73190 -15.21985 -14.71717 -14.58630 -14.31050 -14.08863 -13.79490 -13.66166 -13.31596 -13.28257 -12.91187 -12.69246 -12.58596 -12.36460 -12.27800 -12.07717 -11.99917 -11.94921 -11.72085 -11.54689 -11.42995 -11.38238 -11.18079 -11.01229 -10.99503 -10.82319 -10.72829 -10.68362 -10.41809 -10.27179 -10.08924 -10.05364 -9.03716 -8.75040 -8.62938 -8.36228 -8.19138 -6.07193 -4.10623 2.08097 2.83897 3.31021 3.36838 3.40877 3.51376 3.63572 3.85846 4.15621 4.39372 4.43932 4.61114 4.61478 4.66095 4.79447 5.03744 5.08166 5.14474 5.26522 5.33128 5.33966 5.38166 5.42090 5.47743 5.55737 5.57420 5.66476 5.70610 5.74772 5.77892 5.87670 5.93021 5.93860 6.00969 6.02965 6.12557 6.15115 6.19537 6.27494 6.44549 6.63423 6.83522 6.85757 6.97525 7.45011 7.45118 7.73157 7.94302 8.07757 8.32646 8.34218 8.93068 9.14014 9.54100 11.00427 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003767 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.152670 B = 7431.446050 C = 9221.331055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.037 3.963 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.540 3.460 13 O -0.543 6.543 14 N -0.625 5.625 15 C 0.102 3.898 16 C -0.124 4.124 17 C -0.110 4.110 18 H 0.111 0.889 19 C 0.132 3.868 20 N -0.597 5.597 21 C 0.670 3.330 22 O -0.573 6.573 23 O -0.358 6.358 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.141 4.141 27 C -0.182 4.182 28 C 0.098 3.902 29 C 0.132 3.868 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.010 0.990 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 1.524 -16.394 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.016 3.984 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.333 3.667 13 O -0.418 6.418 14 N -0.362 5.362 15 C -0.021 4.021 16 C -0.162 4.162 17 C -0.130 4.130 18 H 0.129 0.871 19 C 0.011 3.989 20 N -0.338 5.338 21 C 0.425 3.575 22 O -0.463 6.463 23 O -0.272 6.272 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.199 4.199 27 C -0.239 4.239 28 C -0.026 4.026 29 C 0.027 3.973 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.914 1.148 -16.237 19.059 hybrid contribution 0.423 -0.397 0.904 1.074 sum 10.338 0.751 -15.333 18.507 Atomic orbital electron populations 1.21672 0.96073 1.00972 0.99748 1.18855 0.94299 0.96502 0.88714 0.93803 1.20996 1.31439 1.12418 0.89101 0.91594 1.24911 0.94985 0.95014 0.99017 1.69877 1.36812 1.22941 1.23623 0.86472 0.78471 0.80323 0.82116 1.20664 1.21137 1.19679 1.21890 0.74528 0.87533 0.82753 1.90552 1.53597 1.14940 1.82724 1.48869 1.64550 1.08276 1.14519 1.22293 1.02381 0.82102 0.95307 1.22835 0.99264 0.98886 0.95218 1.23193 0.94269 0.95824 0.99673 0.87101 1.21960 0.89209 0.88248 0.99528 1.46844 1.01966 1.20844 1.64110 1.17433 0.81584 0.81219 0.77218 1.90873 1.63275 1.38889 1.53290 1.86359 1.23614 1.40515 1.76722 1.22068 0.74575 0.97048 0.96468 1.22518 1.01678 0.99654 1.00257 1.21859 1.00997 0.95041 1.01956 1.22507 1.01652 1.04270 0.95442 1.22262 0.88708 0.90186 1.01424 1.21963 0.92413 0.96454 0.86509 0.88528 0.89079 0.97111 0.94456 0.92876 0.91610 0.89656 0.89521 0.89921 0.90267 0.90702 0.91942 0.91253 0.89433 0.91499 0.90225 0.91234 0.89445 0.91253 0.92279 0.90013 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.87 37.15 0.33 -2.63 16 2 C 0.04 0.92 2.06 -92.93 -0.19 0.73 16 3 H 0.04 1.09 7.08 -51.93 -0.37 0.73 16 4 C -0.50 -14.07 8.32 -34.44 -0.29 -14.36 16 5 H 0.07 1.95 7.26 -52.48 -0.38 1.57 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.80 11.38 55.43 0.63 -24.17 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.54 12.15 6.35 -10.98 -0.07 12.08 16 13 O -0.54 -13.81 16.27 5.56 0.09 -13.72 16 14 N -0.62 -10.75 3.00 -162.35 -0.49 -11.24 16 15 C 0.10 1.41 5.72 -2.54 -0.01 1.39 16 16 C -0.12 -1.17 6.34 -24.63 -0.16 -1.32 16 17 C -0.11 -1.11 4.33 -87.74 -0.38 -1.49 16 18 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 19 C 0.13 1.54 6.08 -3.39 -0.02 1.52 16 20 N -0.60 -8.65 3.31 -178.26 -0.59 -9.24 16 21 C 0.67 10.51 7.91 54.06 0.43 10.94 16 22 O -0.57 -9.48 12.16 -19.28 -0.23 -9.71 16 23 O -0.36 -5.41 9.47 -40.28 -0.38 -5.79 16 24 C 0.14 1.64 1.13 -90.62 -0.10 1.53 16 25 C -0.18 -2.21 8.37 37.16 0.31 -1.89 16 26 C -0.14 -1.37 8.85 37.16 0.33 -1.05 16 27 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 28 C 0.10 1.49 6.48 -3.71 -0.02 1.46 16 29 C 0.13 1.85 3.55 -66.33 -0.24 1.62 16 30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 2.29 6.23 -51.93 -0.32 1.97 16 32 H 0.01 0.20 8.04 -51.92 -0.42 -0.22 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.07 0.92 7.18 -51.93 -0.37 0.54 16 36 H 0.09 1.22 7.49 -51.93 -0.39 0.83 16 37 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 40 H 0.07 0.90 6.52 -51.93 -0.34 0.57 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 1.54 7.52 -51.93 -0.39 1.15 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -32.62 395.76 -8.54 -41.16 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.64 Total: 1.61 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.13 Total: 8.49 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.45 Total: -44.64 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.53 Total: -29.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.62 -8.54 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451398152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.646 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds