Wall clock time and date at job start Tue Mar 31 2020 21:15:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52989 * 1
3 3 H 1.09000 * 109.47292 * 2 1
4 4 C 1.50694 * 109.47502 * 120.00034 * 2 1 3
5 5 H 1.08003 * 120.00507 * 119.99367 * 4 2 1
6 6 C 1.37878 * 119.99825 * 300.00104 * 4 2 1
7 7 N 1.31517 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46585 * 90.00458 * 8 6 4
10 10 H 1.48498 * 109.47006 * 210.00064 * 8 6 4
11 11 H 1.48493 * 109.47326 * 330.00204 * 8 6 4
12 12 C 1.50707 * 109.47195 * 239.99868 * 2 1 3
13 13 O 1.21274 * 119.99987 * 274.98411 * 12 2 1
14 14 N 1.34778 * 119.99998 * 94.98391 * 12 2 1
15 15 C 1.47460 * 125.60967 * 356.07058 * 14 12 2
16 16 C 1.54859 * 104.56332 * 204.56527 * 15 14 12
17 17 C 1.55127 * 101.77394 * 322.24497 * 16 15 14
18 18 H 1.08996 * 113.46105 * 158.33738 * 17 16 15
19 19 C 1.54042 * 108.26077 * 286.10302 * 17 16 15
20 20 N 1.46704 * 106.82918 * 135.80654 * 19 17 16
21 21 C 1.34783 * 125.32218 * 161.81240 * 20 19 17
22 22 O 1.21509 * 119.99608 * 0.02562 * 21 20 19
23 23 O 1.34625 * 119.99939 * 180.02562 * 21 20 19
24 24 C 1.45206 * 117.00188 * 180.02562 * 23 21 20
25 25 C 1.53003 * 109.46832 * 59.99646 * 24 23 21
26 26 C 1.52996 * 109.47152 * 179.97438 * 24 23 21
27 27 C 1.53000 * 109.46713 * 300.00009 * 24 23 21
28 28 C 1.46626 * 109.35651 * 341.82181 * 20 19 17
29 29 C 1.46723 * 125.59135 * 174.87551 * 14 12 2
30 30 H 1.09003 * 111.33173 * 56.13059 * 29 14 12
31 31 H 1.08998 * 109.47363 * 305.15051 * 1 2 3
32 32 H 1.09011 * 109.47452 * 65.14558 * 1 2 3
33 33 H 1.09002 * 109.47593 * 185.14088 * 1 2 3
34 34 H 0.97005 * 119.99849 * 180.02562 * 7 6 4
35 35 H 1.08997 * 110.97004 * 85.57212 * 15 14 12
36 36 H 1.09006 * 110.01023 * 323.07409 * 15 14 12
37 37 H 1.08998 * 110.96778 * 204.12945 * 16 15 14
38 38 H 1.09002 * 111.00040 * 80.37904 * 16 15 14
39 39 H 1.08995 * 109.98859 * 255.15332 * 19 17 16
40 40 H 1.08994 * 109.98859 * 16.46703 * 19 17 16
41 41 H 1.09003 * 109.46671 * 60.00100 * 25 24 23
42 42 H 1.08998 * 109.46701 * 180.02562 * 25 24 23
43 43 H 1.08993 * 109.47373 * 300.00416 * 25 24 23
44 44 H 1.08995 * 109.47270 * 60.00344 * 26 24 23
45 45 H 1.09003 * 109.46887 * 180.02562 * 26 24 23
46 46 H 1.08998 * 109.47429 * 299.99731 * 26 24 23
47 47 H 1.09004 * 109.47348 * 60.00225 * 27 24 23
48 48 H 1.09003 * 109.46680 * 179.97438 * 27 24 23
49 49 H 1.08995 * 109.47420 * 299.99479 * 27 24 23
50 50 H 1.09000 * 109.75739 * 241.62435 * 28 20 19
51 51 H 1.08999 * 109.76391 * 120.92495 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6992 -0.2393 2.4827
7 7 0.9435 0.8303 2.6033
8 14 2.3214 -1.1203 4.0079
9 1 3.6297 -0.5456 4.4123
10 1 1.3431 -0.9492 5.1120
11 1 2.4860 -2.5661 3.7120
12 6 2.0323 -0.7105 -1.2305
13 8 2.1484 -1.9176 -1.2288
14 7 2.3525 -0.0042 -2.3329
15 6 2.1831 1.4511 -2.4995
16 6 2.0756 1.6578 -4.0305
17 6 3.0974 0.6190 -4.5626
18 1 2.9229 0.3303 -5.5991
19 6 4.5160 1.1529 -4.2880
20 7 5.2990 0.0283 -3.7642
21 6 6.6449 -0.0324 -3.7237
22 8 7.3077 0.8957 -4.1430
23 8 7.2547 -1.1211 -3.2186
24 6 8.7067 -1.1171 -3.2061
25 6 9.2062 0.0605 -2.3666
26 6 9.2151 -2.4268 -2.6000
27 6 9.2287 -0.9806 -4.6378
28 6 4.3886 -1.0196 -3.2919
29 6 2.9499 -0.5535 -3.5552
30 1 2.3409 -1.3582 -3.9672
31 1 -0.3634 0.5916 0.8402
32 1 -0.3634 0.4320 -0.9326
33 1 -0.3634 -1.0235 0.0921
34 1 0.7095 1.1619 3.4844
35 1 3.0424 1.9918 -2.1030
36 1 1.2674 1.7788 -2.0072
37 1 2.3680 2.6703 -4.3088
38 1 1.0699 1.4328 -4.3854
39 1 4.9619 1.5188 -5.2128
40 1 4.4761 1.9545 -3.5505
41 1 8.8343 -0.0368 -1.3467
42 1 10.2962 0.0637 -2.3576
43 1 8.8440 0.9936 -2.7979
44 1 8.8593 -3.2659 -3.1977
45 1 10.3051 -2.4235 -2.5902
46 1 8.8433 -2.5236 -1.5800
47 1 8.8665 -0.0474 -5.0691
48 1 10.3186 -0.9772 -4.6283
49 1 8.8729 -1.8195 -5.2358
50 1 4.5341 -1.1801 -2.2236
51 1 4.5807 -1.9461 -3.8330
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001451398152.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:50
Heat of formation + Delta-G solvation = -109.802817 kcal
Electronic energy + Delta-G solvation = -31503.073823 eV
Core-core repulsion = 27402.661635 eV
Total energy + Delta-G solvation = -4100.412188 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.10528 -40.16285 -38.03311 -36.84360 -35.07183 -33.96682 -33.73667 -31.82755
-30.66646 -29.51613 -27.55378 -27.48191 -27.42783 -25.21341 -24.61552 -23.47450
-21.88173 -21.37983 -20.14248 -19.47703 -18.51622 -17.84230 -16.83437 -16.57779
-16.29983 -15.97358 -15.73190 -15.21985 -14.71717 -14.58630 -14.31050 -14.08863
-13.79490 -13.66166 -13.31596 -13.28257 -12.91187 -12.69246 -12.58596 -12.36460
-12.27800 -12.07717 -11.99917 -11.94921 -11.72085 -11.54689 -11.42995 -11.38238
-11.18079 -11.01229 -10.99503 -10.82319 -10.72829 -10.68362 -10.41809 -10.27179
-10.08924 -10.05364 -9.03716 -8.75040 -8.62938 -8.36228 -8.19138 -6.07193
-4.10623 2.08097 2.83897 3.31021 3.36838 3.40877 3.51376 3.63572
3.85846 4.15621 4.39372 4.43932 4.61114 4.61478 4.66095 4.79447
5.03744 5.08166 5.14474 5.26522 5.33128 5.33966 5.38166 5.42090
5.47743 5.55737 5.57420 5.66476 5.70610 5.74772 5.77892 5.87670
5.93021 5.93860 6.00969 6.02965 6.12557 6.15115 6.19537 6.27494
6.44549 6.63423 6.83522 6.85757 6.97525 7.45011 7.45118 7.73157
7.94302 8.07757 8.32646 8.34218 8.93068 9.14014 9.54100 11.00427
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010555 B = 0.003767 C = 0.003036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2652.152670 B = 7431.446050 C = 9221.331055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.037 3.963
3 H 0.044 0.956
4 C -0.501 4.501
5 H 0.066 0.934
6 C 0.062 3.938
7 N -0.894 5.894
8 Si 0.898 3.102
9 H -0.281 1.281
10 H -0.286 1.286
11 H -0.272 1.272
12 C 0.540 3.460
13 O -0.543 6.543
14 N -0.625 5.625
15 C 0.102 3.898
16 C -0.124 4.124
17 C -0.110 4.110
18 H 0.111 0.889
19 C 0.132 3.868
20 N -0.597 5.597
21 C 0.670 3.330
22 O -0.573 6.573
23 O -0.358 6.358
24 C 0.135 3.865
25 C -0.184 4.184
26 C -0.141 4.141
27 C -0.182 4.182
28 C 0.098 3.902
29 C 0.132 3.868
30 H 0.097 0.903
31 H 0.091 0.909
32 H 0.010 0.990
33 H 0.036 0.964
34 H 0.261 0.739
35 H 0.066 0.934
36 H 0.085 0.915
37 H 0.086 0.914
38 H 0.082 0.918
39 H 0.079 0.921
40 H 0.075 0.925
41 H 0.062 0.938
42 H 0.069 0.931
43 H 0.087 0.913
44 H 0.066 0.934
45 H 0.079 0.921
46 H 0.069 0.931
47 H 0.087 0.913
48 H 0.069 0.931
49 H 0.058 0.942
50 H 0.082 0.918
51 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.605 1.524 -16.394 19.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.016 3.984
3 H 0.062 0.938
4 C -0.540 4.540
5 H 0.084 0.916
6 C -0.139 4.139
7 N -0.533 5.533
8 Si 0.726 3.274
9 H -0.207 1.207
10 H -0.211 1.211
11 H -0.197 1.197
12 C 0.333 3.667
13 O -0.418 6.418
14 N -0.362 5.362
15 C -0.021 4.021
16 C -0.162 4.162
17 C -0.130 4.130
18 H 0.129 0.871
19 C 0.011 3.989
20 N -0.338 5.338
21 C 0.425 3.575
22 O -0.463 6.463
23 O -0.272 6.272
24 C 0.098 3.902
25 C -0.241 4.241
26 C -0.199 4.199
27 C -0.239 4.239
28 C -0.026 4.026
29 C 0.027 3.973
30 H 0.115 0.885
31 H 0.109 0.891
32 H 0.029 0.971
33 H 0.055 0.945
34 H 0.071 0.929
35 H 0.084 0.916
36 H 0.103 0.897
37 H 0.105 0.895
38 H 0.101 0.899
39 H 0.097 0.903
40 H 0.093 0.907
41 H 0.081 0.919
42 H 0.087 0.913
43 H 0.106 0.894
44 H 0.085 0.915
45 H 0.098 0.902
46 H 0.088 0.912
47 H 0.106 0.894
48 H 0.087 0.913
49 H 0.077 0.923
50 H 0.100 0.900
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 9.914 1.148 -16.237 19.059
hybrid contribution 0.423 -0.397 0.904 1.074
sum 10.338 0.751 -15.333 18.507
Atomic orbital electron populations
1.21672 0.96073 1.00972 0.99748 1.18855 0.94299 0.96502 0.88714
0.93803 1.20996 1.31439 1.12418 0.89101 0.91594 1.24911 0.94985
0.95014 0.99017 1.69877 1.36812 1.22941 1.23623 0.86472 0.78471
0.80323 0.82116 1.20664 1.21137 1.19679 1.21890 0.74528 0.87533
0.82753 1.90552 1.53597 1.14940 1.82724 1.48869 1.64550 1.08276
1.14519 1.22293 1.02381 0.82102 0.95307 1.22835 0.99264 0.98886
0.95218 1.23193 0.94269 0.95824 0.99673 0.87101 1.21960 0.89209
0.88248 0.99528 1.46844 1.01966 1.20844 1.64110 1.17433 0.81584
0.81219 0.77218 1.90873 1.63275 1.38889 1.53290 1.86359 1.23614
1.40515 1.76722 1.22068 0.74575 0.97048 0.96468 1.22518 1.01678
0.99654 1.00257 1.21859 1.00997 0.95041 1.01956 1.22507 1.01652
1.04270 0.95442 1.22262 0.88708 0.90186 1.01424 1.21963 0.92413
0.96454 0.86509 0.88528 0.89079 0.97111 0.94456 0.92876 0.91610
0.89656 0.89521 0.89921 0.90267 0.90702 0.91942 0.91253 0.89433
0.91499 0.90225 0.91234 0.89445 0.91253 0.92279 0.90013 0.90780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.96 8.87 37.15 0.33 -2.63 16
2 C 0.04 0.92 2.06 -92.93 -0.19 0.73 16
3 H 0.04 1.09 7.08 -51.93 -0.37 0.73 16
4 C -0.50 -14.07 8.32 -34.44 -0.29 -14.36 16
5 H 0.07 1.95 7.26 -52.48 -0.38 1.57 16
6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16
7 N -0.89 -24.80 11.38 55.43 0.63 -24.17 16
8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16
9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
12 C 0.54 12.15 6.35 -10.98 -0.07 12.08 16
13 O -0.54 -13.81 16.27 5.56 0.09 -13.72 16
14 N -0.62 -10.75 3.00 -162.35 -0.49 -11.24 16
15 C 0.10 1.41 5.72 -2.54 -0.01 1.39 16
16 C -0.12 -1.17 6.34 -24.63 -0.16 -1.32 16
17 C -0.11 -1.11 4.33 -87.74 -0.38 -1.49 16
18 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16
19 C 0.13 1.54 6.08 -3.39 -0.02 1.52 16
20 N -0.60 -8.65 3.31 -178.26 -0.59 -9.24 16
21 C 0.67 10.51 7.91 54.06 0.43 10.94 16
22 O -0.57 -9.48 12.16 -19.28 -0.23 -9.71 16
23 O -0.36 -5.41 9.47 -40.28 -0.38 -5.79 16
24 C 0.14 1.64 1.13 -90.62 -0.10 1.53 16
25 C -0.18 -2.21 8.37 37.16 0.31 -1.89 16
26 C -0.14 -1.37 8.85 37.16 0.33 -1.05 16
27 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16
28 C 0.10 1.49 6.48 -3.71 -0.02 1.46 16
29 C 0.13 1.85 3.55 -66.33 -0.24 1.62 16
30 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
31 H 0.09 2.29 6.23 -51.93 -0.32 1.97 16
32 H 0.01 0.20 8.04 -51.92 -0.42 -0.22 16
33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
35 H 0.07 0.92 7.18 -51.93 -0.37 0.54 16
36 H 0.09 1.22 7.49 -51.93 -0.39 0.83 16
37 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16
38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16
40 H 0.07 0.90 6.52 -51.93 -0.34 0.57 16
41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
43 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16
44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
47 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16
48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
50 H 0.08 1.54 7.52 -51.93 -0.39 1.15 16
51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
LS Contribution 395.76 15.07 5.96 5.96
Total: -1.00 -32.62 395.76 -8.54 -41.16
By element:
Atomic # 1 Polarization: 10.25 SS G_CDS: -8.64 Total: 1.61 kcal
Atomic # 6 Polarization: 8.36 SS G_CDS: 0.13 Total: 8.49 kcal
Atomic # 7 Polarization: -44.20 SS G_CDS: -0.45 Total: -44.64 kcal
Atomic # 8 Polarization: -28.69 SS G_CDS: -0.53 Total: -29.22 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -32.62 -8.54 -41.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001451398152.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.646 kcal
(2) G-P(sol) polarization free energy of solvation -32.621 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds