Wall clock time and date at job start Tue Mar 31 2020 21:15:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52989 * 1
3 3 H 1.09000 * 109.47292 * 2 1
4 4 C 1.50694 * 109.47502 * 120.00034 * 2 1 3
5 5 H 1.08003 * 120.00507 * 119.99367 * 4 2 1
6 6 C 1.37878 * 119.99825 * 300.00104 * 4 2 1
7 7 N 1.31517 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46585 * 90.00458 * 8 6 4
10 10 H 1.48498 * 109.47006 * 210.00064 * 8 6 4
11 11 H 1.48493 * 109.47326 * 330.00204 * 8 6 4
12 12 C 1.50707 * 109.47195 * 239.99868 * 2 1 3
13 13 O 1.21274 * 119.99987 * 274.98411 * 12 2 1
14 14 N 1.34778 * 119.99998 * 94.98391 * 12 2 1
15 15 C 1.47460 * 125.60967 * 356.07058 * 14 12 2
16 16 C 1.54859 * 104.56332 * 204.56527 * 15 14 12
17 17 C 1.55127 * 101.77394 * 322.24497 * 16 15 14
18 18 H 1.08996 * 113.46105 * 158.33738 * 17 16 15
19 19 C 1.54042 * 108.26077 * 286.10302 * 17 16 15
20 20 N 1.46704 * 106.82918 * 135.80654 * 19 17 16
21 21 C 1.34783 * 125.32218 * 161.81240 * 20 19 17
22 22 O 1.21509 * 119.99608 * 0.02562 * 21 20 19
23 23 O 1.34625 * 119.99939 * 180.02562 * 21 20 19
24 24 C 1.45206 * 117.00188 * 180.02562 * 23 21 20
25 25 C 1.53003 * 109.46832 * 59.99646 * 24 23 21
26 26 C 1.52996 * 109.47152 * 179.97438 * 24 23 21
27 27 C 1.53000 * 109.46713 * 300.00009 * 24 23 21
28 28 C 1.46626 * 109.35651 * 341.82181 * 20 19 17
29 29 C 1.46723 * 125.59135 * 174.87551 * 14 12 2
30 30 H 1.09003 * 111.33173 * 56.13059 * 29 14 12
31 31 H 1.08998 * 109.47363 * 305.15051 * 1 2 3
32 32 H 1.09011 * 109.47452 * 65.14558 * 1 2 3
33 33 H 1.09002 * 109.47593 * 185.14088 * 1 2 3
34 34 H 0.97005 * 119.99849 * 180.02562 * 7 6 4
35 35 H 1.08997 * 110.97004 * 85.57212 * 15 14 12
36 36 H 1.09006 * 110.01023 * 323.07409 * 15 14 12
37 37 H 1.08998 * 110.96778 * 204.12945 * 16 15 14
38 38 H 1.09002 * 111.00040 * 80.37904 * 16 15 14
39 39 H 1.08995 * 109.98859 * 255.15332 * 19 17 16
40 40 H 1.08994 * 109.98859 * 16.46703 * 19 17 16
41 41 H 1.09003 * 109.46671 * 60.00100 * 25 24 23
42 42 H 1.08998 * 109.46701 * 180.02562 * 25 24 23
43 43 H 1.08993 * 109.47373 * 300.00416 * 25 24 23
44 44 H 1.08995 * 109.47270 * 60.00344 * 26 24 23
45 45 H 1.09003 * 109.46887 * 180.02562 * 26 24 23
46 46 H 1.08998 * 109.47429 * 299.99731 * 26 24 23
47 47 H 1.09004 * 109.47348 * 60.00225 * 27 24 23
48 48 H 1.09003 * 109.46680 * 179.97438 * 27 24 23
49 49 H 1.08995 * 109.47420 * 299.99479 * 27 24 23
50 50 H 1.09000 * 109.75739 * 241.62435 * 28 20 19
51 51 H 1.08999 * 109.76391 * 120.92495 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6532 -1.5885 1.1313
6 6 1.6992 -0.2393 2.4827
7 7 0.9435 0.8303 2.6033
8 14 2.3214 -1.1203 4.0079
9 1 3.6297 -0.5456 4.4123
10 1 1.3431 -0.9492 5.1120
11 1 2.4860 -2.5661 3.7120
12 6 2.0323 -0.7105 -1.2305
13 8 2.1484 -1.9176 -1.2288
14 7 2.3525 -0.0042 -2.3329
15 6 2.1831 1.4511 -2.4995
16 6 2.0756 1.6578 -4.0305
17 6 3.0974 0.6190 -4.5626
18 1 2.9229 0.3303 -5.5991
19 6 4.5160 1.1529 -4.2880
20 7 5.2990 0.0283 -3.7642
21 6 6.6449 -0.0324 -3.7237
22 8 7.3077 0.8957 -4.1430
23 8 7.2547 -1.1211 -3.2186
24 6 8.7067 -1.1171 -3.2061
25 6 9.2062 0.0605 -2.3666
26 6 9.2151 -2.4268 -2.6000
27 6 9.2287 -0.9806 -4.6378
28 6 4.3886 -1.0196 -3.2919
29 6 2.9499 -0.5535 -3.5552
30 1 2.3409 -1.3582 -3.9672
31 1 -0.3634 0.5916 0.8402
32 1 -0.3634 0.4320 -0.9326
33 1 -0.3634 -1.0235 0.0921
34 1 0.7095 1.1619 3.4844
35 1 3.0424 1.9918 -2.1030
36 1 1.2674 1.7788 -2.0072
37 1 2.3680 2.6703 -4.3088
38 1 1.0699 1.4328 -4.3854
39 1 4.9619 1.5188 -5.2128
40 1 4.4761 1.9545 -3.5505
41 1 8.8343 -0.0368 -1.3467
42 1 10.2962 0.0637 -2.3576
43 1 8.8440 0.9936 -2.7979
44 1 8.8593 -3.2659 -3.1977
45 1 10.3051 -2.4235 -2.5902
46 1 8.8433 -2.5236 -1.5800
47 1 8.8665 -0.0474 -5.0691
48 1 10.3186 -0.9772 -4.6283
49 1 8.8729 -1.8195 -5.2358
50 1 4.5341 -1.1801 -2.2236
51 1 4.5807 -1.9461 -3.8330
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001451398152.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:49
Heat of formation + Delta-G solvation = -129.957541 kcal
Electronic energy + Delta-G solvation = -31503.947797 eV
Core-core repulsion = 27402.661635 eV
Total energy + Delta-G solvation = -4101.286162 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.25960 -41.37195 -39.56314 -38.02735 -36.31278 -35.78268 -34.97408 -33.13364
-32.42517 -30.81785 -28.59693 -28.39677 -28.32665 -27.30549 -25.74413 -25.06115
-23.08117 -22.69269 -21.20669 -20.59159 -19.94057 -19.01401 -18.40284 -18.01240
-17.65803 -17.49330 -17.08290 -16.58862 -16.23798 -15.67095 -15.60242 -15.47821
-14.87483 -14.81288 -14.74315 -14.53992 -14.26074 -14.14766 -13.78605 -13.50840
-13.39927 -13.17574 -13.04704 -13.00714 -12.92088 -12.90862 -12.85653 -12.64564
-12.58542 -12.52129 -12.35832 -12.29536 -12.12347 -12.07616 -11.96408 -11.72834
-11.43823 -11.18989 -11.10090 -10.63270 -10.32423 -9.86268 -9.63040 -8.19600
-6.30120 1.03487 1.36889 1.38071 1.49370 1.64111 1.85283 2.13089
2.42284 2.76819 3.10224 3.16083 3.40504 3.65710 3.70945 3.76196
3.90640 4.01462 4.11012 4.17555 4.22703 4.28882 4.42207 4.47259
4.57454 4.59196 4.66480 4.71044 4.71907 4.72189 4.78338 4.81221
4.83006 4.83301 4.93877 5.01319 5.02816 5.05571 5.12711 5.16049
5.24024 5.25933 5.30210 5.39028 5.40206 5.55387 5.69816 5.89530
6.15408 6.27876 6.60732 6.75056 7.16765 7.34161 7.45554 8.86474
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.010555 B = 0.003767 C = 0.003036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2652.152670 B = 7431.446050 C = 9221.331055
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C 0.034 3.966
3 H 0.037 0.963
4 C -0.530 4.530
5 H 0.038 0.962
6 C 0.025 3.975
7 N -0.907 5.907
8 Si 0.952 3.048
9 H -0.273 1.273
10 H -0.272 1.272
11 H -0.279 1.279
12 C 0.539 3.461
13 O -0.584 6.584
14 N -0.620 5.620
15 C 0.089 3.911
16 C -0.106 4.106
17 C -0.086 4.086
18 H 0.152 0.848
19 C 0.124 3.876
20 N -0.599 5.599
21 C 0.662 3.338
22 O -0.585 6.585
23 O -0.375 6.375
24 C 0.120 3.880
25 C -0.180 4.180
26 C -0.137 4.137
27 C -0.173 4.173
28 C 0.106 3.894
29 C 0.123 3.877
30 H 0.105 0.895
31 H 0.072 0.928
32 H 0.044 0.956
33 H 0.019 0.981
34 H 0.266 0.734
35 H 0.060 0.940
36 H 0.080 0.920
37 H 0.119 0.881
38 H 0.101 0.899
39 H 0.097 0.903
40 H 0.069 0.931
41 H 0.048 0.952
42 H 0.097 0.903
43 H 0.064 0.936
44 H 0.069 0.931
45 H 0.109 0.891
46 H 0.057 0.943
47 H 0.065 0.935
48 H 0.095 0.905
49 H 0.063 0.937
50 H 0.035 0.965
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.042 2.328 -18.467 21.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.013 3.987
3 H 0.055 0.945
4 C -0.568 4.568
5 H 0.057 0.943
6 C -0.175 4.175
7 N -0.546 5.546
8 Si 0.778 3.222
9 H -0.199 1.199
10 H -0.196 1.196
11 H -0.205 1.205
12 C 0.331 3.669
13 O -0.464 6.464
14 N -0.354 5.354
15 C -0.034 4.034
16 C -0.144 4.144
17 C -0.105 4.105
18 H 0.169 0.831
19 C 0.004 3.996
20 N -0.340 5.340
21 C 0.418 3.582
22 O -0.476 6.476
23 O -0.290 6.290
24 C 0.084 3.916
25 C -0.237 4.237
26 C -0.194 4.194
27 C -0.230 4.230
28 C -0.018 4.018
29 C 0.019 3.981
30 H 0.123 0.877
31 H 0.091 0.909
32 H 0.063 0.937
33 H 0.038 0.962
34 H 0.076 0.924
35 H 0.078 0.922
36 H 0.098 0.902
37 H 0.138 0.862
38 H 0.119 0.881
39 H 0.115 0.885
40 H 0.087 0.913
41 H 0.067 0.933
42 H 0.116 0.884
43 H 0.083 0.917
44 H 0.089 0.911
45 H 0.127 0.873
46 H 0.076 0.924
47 H 0.084 0.916
48 H 0.114 0.886
49 H 0.082 0.918
50 H 0.053 0.947
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 10.351 2.009 -18.345 21.160
hybrid contribution 0.362 -0.607 1.557 1.710
sum 10.713 1.402 -16.788 19.964
Atomic orbital electron populations
1.21473 0.95225 0.99695 1.00712 1.18746 0.95048 0.95744 0.89133
0.94537 1.21139 1.32090 1.12265 0.91304 0.94323 1.25541 0.95052
0.95683 1.01240 1.69943 1.36833 1.23356 1.24432 0.85645 0.78521
0.78782 0.79285 1.19899 1.19636 1.20469 1.21340 0.74913 0.86958
0.83728 1.90515 1.55712 1.16462 1.83711 1.48692 1.62817 1.09836
1.14065 1.22608 1.01918 0.79649 0.99181 1.22849 1.00147 1.00452
0.90913 1.23289 0.93177 0.93655 1.00371 0.83078 1.22223 0.89981
0.87394 0.99994 1.47013 1.01730 1.21397 1.63846 1.17646 0.81983
0.81295 0.77266 1.90861 1.63565 1.39262 1.53912 1.86368 1.25526
1.40501 1.76613 1.22490 0.73227 0.98188 0.97659 1.22477 1.03422
0.98591 0.99184 1.21898 1.02734 0.93813 1.00996 1.22429 1.03189
1.03209 0.94210 1.22075 0.89857 0.91216 0.98689 1.22238 0.91180
0.98624 0.86063 0.87743 0.90911 0.93702 0.96168 0.92440 0.92178
0.90190 0.86230 0.88051 0.88491 0.91312 0.93255 0.88395 0.91699
0.91148 0.87258 0.92433 0.91591 0.88642 0.91838 0.94663 0.89838
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.37 8.87 71.98 0.64 -4.73 16
2 C 0.03 1.76 2.06 -12.29 -0.03 1.73 16
3 H 0.04 1.88 7.08 -2.39 -0.02 1.87 16
4 C -0.53 -31.02 8.32 25.60 0.21 -30.80 16
5 H 0.04 2.42 7.26 -2.91 -0.02 2.40 16
6 C 0.02 1.39 5.30 84.65 0.45 1.84 16
7 N -0.91 -50.90 11.38 21.45 0.24 -50.66 16
8 Si 0.95 45.16 29.54 68.60 2.03 47.18 16
9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16
12 C 0.54 25.06 6.35 87.66 0.56 25.61 16
13 O -0.58 -31.17 16.27 -3.01 -0.05 -31.22 16
14 N -0.62 -21.27 3.00 -785.96 -2.36 -23.63 16
15 C 0.09 2.31 5.72 86.83 0.50 2.81 16
16 C -0.11 -1.56 6.34 31.96 0.20 -1.36 16
17 C -0.09 -1.42 4.33 -8.93 -0.04 -1.46 16
18 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16
19 C 0.12 2.63 6.08 86.69 0.53 3.15 16
20 N -0.60 -17.17 3.31 -948.31 -3.14 -20.31 16
21 C 0.66 20.99 7.91 129.79 1.03 22.01 16
22 O -0.58 -19.36 12.16 19.81 0.24 -19.12 16
23 O -0.38 -11.61 9.47 -55.34 -0.52 -12.13 16
24 C 0.12 2.86 1.13 -10.79 -0.01 2.85 16
25 C -0.18 -4.28 8.37 71.98 0.60 -3.68 16
26 C -0.14 -2.53 8.85 71.98 0.64 -1.89 16
27 C -0.17 -3.52 8.37 71.98 0.60 -2.91 16
28 C 0.11 3.26 6.48 86.53 0.56 3.82 16
29 C 0.12 3.32 3.55 45.91 0.16 3.48 16
30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16
31 H 0.07 3.72 6.23 -2.39 -0.01 3.70 16
32 H 0.04 1.76 8.04 -2.38 -0.02 1.75 16
33 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16
34 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16
35 H 0.06 1.65 7.18 -2.39 -0.02 1.63 16
36 H 0.08 2.18 7.49 -2.38 -0.02 2.17 16
37 H 0.12 1.12 8.08 -2.39 -0.02 1.10 16
38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16
39 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16
40 H 0.07 1.54 6.52 -2.39 -0.02 1.53 16
41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16
42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
43 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16
44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16
46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
47 H 0.07 1.65 5.88 -2.38 -0.01 1.64 16
48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
49 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
50 H 0.03 1.42 7.52 -2.39 -0.02 1.40 16
51 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
Total: -1.00 -75.54 395.76 3.95 -71.59
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: 0.91 Total: 17.81 kcal
Atomic # 6 Polarization: 13.88 SS G_CDS: 6.60 Total: 20.48 kcal
Atomic # 7 Polarization: -89.34 SS G_CDS: -5.25 Total: -94.59 kcal
Atomic # 8 Polarization: -62.14 SS G_CDS: -0.33 Total: -62.47 kcal
Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal
Total: -75.54 3.95 -71.59 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001451398152.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.369 kcal
(2) G-P(sol) polarization free energy of solvation -75.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds