Wall clock time and date at job start Tue Mar 31 2020 21:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47292 * 2 1 4 4 C 1.50694 * 109.47502 * 120.00034 * 2 1 3 5 5 H 1.08003 * 120.00507 * 119.99367 * 4 2 1 6 6 C 1.37878 * 119.99825 * 300.00104 * 4 2 1 7 7 N 1.31517 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46585 * 90.00458 * 8 6 4 10 10 H 1.48498 * 109.47006 * 210.00064 * 8 6 4 11 11 H 1.48493 * 109.47326 * 330.00204 * 8 6 4 12 12 C 1.50707 * 109.47195 * 239.99868 * 2 1 3 13 13 O 1.21274 * 119.99987 * 274.98411 * 12 2 1 14 14 N 1.34778 * 119.99998 * 94.98391 * 12 2 1 15 15 C 1.47460 * 125.60967 * 356.07058 * 14 12 2 16 16 C 1.54859 * 104.56332 * 204.56527 * 15 14 12 17 17 C 1.55127 * 101.77394 * 322.24497 * 16 15 14 18 18 H 1.08996 * 113.46105 * 158.33738 * 17 16 15 19 19 C 1.54042 * 108.26077 * 286.10302 * 17 16 15 20 20 N 1.46704 * 106.82918 * 135.80654 * 19 17 16 21 21 C 1.34783 * 125.32218 * 161.81240 * 20 19 17 22 22 O 1.21509 * 119.99608 * 0.02562 * 21 20 19 23 23 O 1.34625 * 119.99939 * 180.02562 * 21 20 19 24 24 C 1.45206 * 117.00188 * 180.02562 * 23 21 20 25 25 C 1.53003 * 109.46832 * 59.99646 * 24 23 21 26 26 C 1.52996 * 109.47152 * 179.97438 * 24 23 21 27 27 C 1.53000 * 109.46713 * 300.00009 * 24 23 21 28 28 C 1.46626 * 109.35651 * 341.82181 * 20 19 17 29 29 C 1.46723 * 125.59135 * 174.87551 * 14 12 2 30 30 H 1.09003 * 111.33173 * 56.13059 * 29 14 12 31 31 H 1.08998 * 109.47363 * 305.15051 * 1 2 3 32 32 H 1.09011 * 109.47452 * 65.14558 * 1 2 3 33 33 H 1.09002 * 109.47593 * 185.14088 * 1 2 3 34 34 H 0.97005 * 119.99849 * 180.02562 * 7 6 4 35 35 H 1.08997 * 110.97004 * 85.57212 * 15 14 12 36 36 H 1.09006 * 110.01023 * 323.07409 * 15 14 12 37 37 H 1.08998 * 110.96778 * 204.12945 * 16 15 14 38 38 H 1.09002 * 111.00040 * 80.37904 * 16 15 14 39 39 H 1.08995 * 109.98859 * 255.15332 * 19 17 16 40 40 H 1.08994 * 109.98859 * 16.46703 * 19 17 16 41 41 H 1.09003 * 109.46671 * 60.00100 * 25 24 23 42 42 H 1.08998 * 109.46701 * 180.02562 * 25 24 23 43 43 H 1.08993 * 109.47373 * 300.00416 * 25 24 23 44 44 H 1.08995 * 109.47270 * 60.00344 * 26 24 23 45 45 H 1.09003 * 109.46887 * 180.02562 * 26 24 23 46 46 H 1.08998 * 109.47429 * 299.99731 * 26 24 23 47 47 H 1.09004 * 109.47348 * 60.00225 * 27 24 23 48 48 H 1.09003 * 109.46680 * 179.97438 * 27 24 23 49 49 H 1.08995 * 109.47420 * 299.99479 * 27 24 23 50 50 H 1.09000 * 109.75739 * 241.62435 * 28 20 19 51 51 H 1.08999 * 109.76391 * 120.92495 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5456 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4860 -2.5661 3.7120 12 6 2.0323 -0.7105 -1.2305 13 8 2.1484 -1.9176 -1.2288 14 7 2.3525 -0.0042 -2.3329 15 6 2.1831 1.4511 -2.4995 16 6 2.0756 1.6578 -4.0305 17 6 3.0974 0.6190 -4.5626 18 1 2.9229 0.3303 -5.5991 19 6 4.5160 1.1529 -4.2880 20 7 5.2990 0.0283 -3.7642 21 6 6.6449 -0.0324 -3.7237 22 8 7.3077 0.8957 -4.1430 23 8 7.2547 -1.1211 -3.2186 24 6 8.7067 -1.1171 -3.2061 25 6 9.2062 0.0605 -2.3666 26 6 9.2151 -2.4268 -2.6000 27 6 9.2287 -0.9806 -4.6378 28 6 4.3886 -1.0196 -3.2919 29 6 2.9499 -0.5535 -3.5552 30 1 2.3409 -1.3582 -3.9672 31 1 -0.3634 0.5916 0.8402 32 1 -0.3634 0.4320 -0.9326 33 1 -0.3634 -1.0235 0.0921 34 1 0.7095 1.1619 3.4844 35 1 3.0424 1.9918 -2.1030 36 1 1.2674 1.7788 -2.0072 37 1 2.3680 2.6703 -4.3088 38 1 1.0699 1.4328 -4.3854 39 1 4.9619 1.5188 -5.2128 40 1 4.4761 1.9545 -3.5505 41 1 8.8343 -0.0368 -1.3467 42 1 10.2962 0.0637 -2.3576 43 1 8.8440 0.9936 -2.7979 44 1 8.8593 -3.2659 -3.1977 45 1 10.3051 -2.4235 -2.5902 46 1 8.8433 -2.5236 -1.5800 47 1 8.8665 -0.0474 -5.0691 48 1 10.3186 -0.9772 -4.6283 49 1 8.8729 -1.8195 -5.2358 50 1 4.5341 -1.1801 -2.2236 51 1 4.5807 -1.9461 -3.8330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451398152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:49 Heat of formation + Delta-G solvation = -129.957541 kcal Electronic energy + Delta-G solvation = -31503.947797 eV Core-core repulsion = 27402.661635 eV Total energy + Delta-G solvation = -4101.286162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25960 -41.37195 -39.56314 -38.02735 -36.31278 -35.78268 -34.97408 -33.13364 -32.42517 -30.81785 -28.59693 -28.39677 -28.32665 -27.30549 -25.74413 -25.06115 -23.08117 -22.69269 -21.20669 -20.59159 -19.94057 -19.01401 -18.40284 -18.01240 -17.65803 -17.49330 -17.08290 -16.58862 -16.23798 -15.67095 -15.60242 -15.47821 -14.87483 -14.81288 -14.74315 -14.53992 -14.26074 -14.14766 -13.78605 -13.50840 -13.39927 -13.17574 -13.04704 -13.00714 -12.92088 -12.90862 -12.85653 -12.64564 -12.58542 -12.52129 -12.35832 -12.29536 -12.12347 -12.07616 -11.96408 -11.72834 -11.43823 -11.18989 -11.10090 -10.63270 -10.32423 -9.86268 -9.63040 -8.19600 -6.30120 1.03487 1.36889 1.38071 1.49370 1.64111 1.85283 2.13089 2.42284 2.76819 3.10224 3.16083 3.40504 3.65710 3.70945 3.76196 3.90640 4.01462 4.11012 4.17555 4.22703 4.28882 4.42207 4.47259 4.57454 4.59196 4.66480 4.71044 4.71907 4.72189 4.78338 4.81221 4.83006 4.83301 4.93877 5.01319 5.02816 5.05571 5.12711 5.16049 5.24024 5.25933 5.30210 5.39028 5.40206 5.55387 5.69816 5.89530 6.15408 6.27876 6.60732 6.75056 7.16765 7.34161 7.45554 8.86474 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.003767 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.152670 B = 7431.446050 C = 9221.331055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.034 3.966 3 H 0.037 0.963 4 C -0.530 4.530 5 H 0.038 0.962 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.539 3.461 13 O -0.584 6.584 14 N -0.620 5.620 15 C 0.089 3.911 16 C -0.106 4.106 17 C -0.086 4.086 18 H 0.152 0.848 19 C 0.124 3.876 20 N -0.599 5.599 21 C 0.662 3.338 22 O -0.585 6.585 23 O -0.375 6.375 24 C 0.120 3.880 25 C -0.180 4.180 26 C -0.137 4.137 27 C -0.173 4.173 28 C 0.106 3.894 29 C 0.123 3.877 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.109 0.891 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.063 0.937 50 H 0.035 0.965 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 2.328 -18.467 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.013 3.987 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.057 0.943 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.331 3.669 13 O -0.464 6.464 14 N -0.354 5.354 15 C -0.034 4.034 16 C -0.144 4.144 17 C -0.105 4.105 18 H 0.169 0.831 19 C 0.004 3.996 20 N -0.340 5.340 21 C 0.418 3.582 22 O -0.476 6.476 23 O -0.290 6.290 24 C 0.084 3.916 25 C -0.237 4.237 26 C -0.194 4.194 27 C -0.230 4.230 28 C -0.018 4.018 29 C 0.019 3.981 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.351 2.009 -18.345 21.160 hybrid contribution 0.362 -0.607 1.557 1.710 sum 10.713 1.402 -16.788 19.964 Atomic orbital electron populations 1.21473 0.95225 0.99695 1.00712 1.18746 0.95048 0.95744 0.89133 0.94537 1.21139 1.32090 1.12265 0.91304 0.94323 1.25541 0.95052 0.95683 1.01240 1.69943 1.36833 1.23356 1.24432 0.85645 0.78521 0.78782 0.79285 1.19899 1.19636 1.20469 1.21340 0.74913 0.86958 0.83728 1.90515 1.55712 1.16462 1.83711 1.48692 1.62817 1.09836 1.14065 1.22608 1.01918 0.79649 0.99181 1.22849 1.00147 1.00452 0.90913 1.23289 0.93177 0.93655 1.00371 0.83078 1.22223 0.89981 0.87394 0.99994 1.47013 1.01730 1.21397 1.63846 1.17646 0.81983 0.81295 0.77266 1.90861 1.63565 1.39262 1.53912 1.86368 1.25526 1.40501 1.76613 1.22490 0.73227 0.98188 0.97659 1.22477 1.03422 0.98591 0.99184 1.21898 1.02734 0.93813 1.00996 1.22429 1.03189 1.03209 0.94210 1.22075 0.89857 0.91216 0.98689 1.22238 0.91180 0.98624 0.86063 0.87743 0.90911 0.93702 0.96168 0.92440 0.92178 0.90190 0.86230 0.88051 0.88491 0.91312 0.93255 0.88395 0.91699 0.91148 0.87258 0.92433 0.91591 0.88642 0.91838 0.94663 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.37 8.87 71.98 0.64 -4.73 16 2 C 0.03 1.76 2.06 -12.29 -0.03 1.73 16 3 H 0.04 1.88 7.08 -2.39 -0.02 1.87 16 4 C -0.53 -31.02 8.32 25.60 0.21 -30.80 16 5 H 0.04 2.42 7.26 -2.91 -0.02 2.40 16 6 C 0.02 1.39 5.30 84.65 0.45 1.84 16 7 N -0.91 -50.90 11.38 21.45 0.24 -50.66 16 8 Si 0.95 45.16 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 C 0.54 25.06 6.35 87.66 0.56 25.61 16 13 O -0.58 -31.17 16.27 -3.01 -0.05 -31.22 16 14 N -0.62 -21.27 3.00 -785.96 -2.36 -23.63 16 15 C 0.09 2.31 5.72 86.83 0.50 2.81 16 16 C -0.11 -1.56 6.34 31.96 0.20 -1.36 16 17 C -0.09 -1.42 4.33 -8.93 -0.04 -1.46 16 18 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 19 C 0.12 2.63 6.08 86.69 0.53 3.15 16 20 N -0.60 -17.17 3.31 -948.31 -3.14 -20.31 16 21 C 0.66 20.99 7.91 129.79 1.03 22.01 16 22 O -0.58 -19.36 12.16 19.81 0.24 -19.12 16 23 O -0.38 -11.61 9.47 -55.34 -0.52 -12.13 16 24 C 0.12 2.86 1.13 -10.79 -0.01 2.85 16 25 C -0.18 -4.28 8.37 71.98 0.60 -3.68 16 26 C -0.14 -2.53 8.85 71.98 0.64 -1.89 16 27 C -0.17 -3.52 8.37 71.98 0.60 -2.91 16 28 C 0.11 3.26 6.48 86.53 0.56 3.82 16 29 C 0.12 3.32 3.55 45.91 0.16 3.48 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 3.72 6.23 -2.39 -0.01 3.70 16 32 H 0.04 1.76 8.04 -2.38 -0.02 1.75 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 35 H 0.06 1.65 7.18 -2.39 -0.02 1.63 16 36 H 0.08 2.18 7.49 -2.38 -0.02 2.17 16 37 H 0.12 1.12 8.08 -2.39 -0.02 1.10 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 40 H 0.07 1.54 6.52 -2.39 -0.02 1.53 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.65 5.88 -2.38 -0.01 1.64 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.03 1.42 7.52 -2.39 -0.02 1.40 16 51 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.54 395.76 3.95 -71.59 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.91 Total: 17.81 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 6.60 Total: 20.48 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -5.25 Total: -94.59 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -0.33 Total: -62.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.54 3.95 -71.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451398152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.369 kcal (2) G-P(sol) polarization free energy of solvation -75.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds