Wall clock time and date at job start Tue Mar 31 2020 21:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47034 * 2 1 4 4 O 1.42902 * 109.47276 * 119.99727 * 2 1 3 5 5 C 1.42900 * 114.00086 * 270.00104 * 4 2 1 6 6 C 1.53005 * 109.46982 * 179.97438 * 5 4 2 7 7 H 1.08992 * 110.27520 * 54.30308 * 6 5 4 8 8 C 1.54950 * 110.30537 * 176.39139 * 6 5 4 9 9 C 1.55566 * 100.82436 * 155.40843 * 8 6 5 10 10 C 1.54384 * 102.27338 * 325.88172 * 9 8 6 11 11 O 1.43239 * 107.58980 * 21.35632 * 10 9 8 12 12 C 1.50700 * 109.47142 * 239.99700 * 2 1 3 13 13 O 1.21283 * 119.99972 * 247.42380 * 12 2 1 14 14 N 1.34771 * 119.99798 * 67.42301 * 12 2 1 15 15 C 1.47163 * 120.71284 * 4.71271 * 14 12 2 16 16 C 1.53882 * 108.03052 * 132.73026 * 15 14 12 17 17 H 1.09008 * 112.09836 * 182.54709 * 16 15 14 18 18 C 1.54550 * 107.83387 * 306.50738 * 16 15 14 19 19 C 1.54272 * 104.84963 * 89.07411 * 18 16 15 20 20 C 1.54544 * 104.85021 * 359.97438 * 19 18 16 21 21 H 1.09001 * 112.18297 * 146.41315 * 20 19 18 22 22 C 1.47168 * 120.70927 * 184.42563 * 14 12 2 23 23 N 1.48305 * 104.35697 * 24.70490 * 20 19 18 24 24 C 1.36939 * 128.08003 * 139.08452 * 23 20 19 25 25 H 1.08000 * 119.99789 * 195.21309 * 24 23 20 26 26 C 1.38812 * 119.99585 * 15.20464 * 24 23 20 27 27 N 1.31620 * 119.99971 * 9.61311 * 26 24 23 28 28 Si 1.86797 * 119.99740 * 189.60974 * 26 24 23 29 29 H 1.48505 * 109.47170 * 94.97365 * 28 26 24 30 30 H 1.48502 * 109.47421 * 214.97131 * 28 26 24 31 31 H 1.48503 * 109.47498 * 334.97344 * 28 26 24 32 32 H 1.08995 * 109.47502 * 64.94788 * 1 2 3 33 33 H 1.09002 * 109.47315 * 184.95252 * 1 2 3 34 34 H 1.09002 * 109.47215 * 304.94898 * 1 2 3 35 35 H 1.09005 * 109.47004 * 60.00263 * 5 4 2 36 36 H 1.08997 * 109.46865 * 299.99793 * 5 4 2 37 37 H 1.09004 * 111.12119 * 273.37510 * 8 6 5 38 38 H 1.08995 * 111.12617 * 37.53773 * 8 6 5 39 39 H 1.08994 * 110.83387 * 207.68008 * 9 8 6 40 40 H 1.08999 * 111.00831 * 84.15297 * 9 8 6 41 41 H 1.09005 * 109.82831 * 261.84362 * 10 9 8 42 42 H 1.09001 * 109.82926 * 140.86933 * 10 9 8 43 43 H 1.08996 * 109.75208 * 252.36665 * 15 14 12 44 44 H 1.09006 * 109.74888 * 13.09714 * 15 14 12 45 45 H 1.09004 * 110.36369 * 207.92118 * 18 16 15 46 46 H 1.09005 * 110.36226 * 330.11915 * 18 16 15 47 47 H 1.09000 * 110.36584 * 118.84803 * 19 18 16 48 48 H 1.09006 * 110.36230 * 241.04828 * 19 18 16 49 49 H 1.08998 * 109.75085 * 346.90367 * 22 14 12 50 50 H 1.09005 * 109.74538 * 107.63159 * 22 14 12 51 51 H 0.97010 * 119.99402 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7080 -0.6407 3.4792 7 1 3.6005 -1.1988 3.1965 8 6 3.0111 0.2832 4.6857 9 6 2.8620 -0.7193 5.8660 10 6 1.7371 -1.6506 5.3655 11 8 1.6840 -1.5372 3.9386 12 6 2.0323 -0.7105 -1.2304 13 8 2.6146 -1.7690 -1.1242 14 7 1.8345 -0.1695 -2.4488 15 6 1.2224 1.1613 -2.5899 16 6 2.0741 1.9747 -3.5804 17 1 1.7030 2.9926 -3.7007 18 6 3.5374 1.9420 -3.0844 19 6 4.1495 0.6872 -3.7409 20 6 3.0003 0.0753 -4.5735 21 1 3.3609 -0.4005 -5.4855 22 6 2.2316 -0.8944 -3.6665 23 7 2.1013 1.2203 -4.8567 24 6 1.4487 1.5130 -6.0245 25 1 1.0259 2.4953 -6.1752 26 6 1.3308 0.5472 -7.0145 27 7 1.6743 -0.6983 -6.7631 28 14 0.6845 1.0151 -8.7035 29 1 1.8266 1.2978 -9.6097 30 1 -0.1186 -0.1060 -9.2543 31 1 -0.1682 2.2255 -8.5895 32 1 -0.3634 0.4351 -0.9309 33 1 -0.3634 -1.0238 0.0887 34 1 -0.3634 0.5887 0.8423 35 1 1.2537 0.6547 2.5589 36 1 2.9320 0.9514 2.0450 37 1 4.0246 0.6806 4.6311 38 1 2.2790 1.0874 4.7583 39 1 2.5614 -0.2029 6.7775 40 1 3.7853 -1.2766 6.0243 41 1 0.7840 -1.3440 5.7966 42 1 1.9572 -2.6805 5.6466 43 1 0.2070 1.0610 -2.9732 44 1 1.2036 1.6626 -1.6222 45 1 4.0681 2.8371 -3.4089 46 1 3.5679 1.8569 -1.9981 47 1 4.9812 0.9653 -4.3883 48 1 4.4827 -0.0160 -2.9776 49 1 2.8720 -1.7358 -3.4019 50 1 1.3440 -1.2554 -4.1862 51 1 1.5916 -1.3733 -7.4549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481391311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:06 Heat of formation + Delta-G solvation = -84.966960 kcal Electronic energy + Delta-G solvation = -31274.531357 eV Core-core repulsion = 27175.196133 eV Total energy + Delta-G solvation = -4099.335224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.24348 -39.68947 -38.29458 -36.92733 -33.89932 -32.54110 -32.42042 -31.85961 -30.66532 -29.91233 -29.25185 -26.39494 -25.72775 -24.25733 -23.85755 -22.93021 -21.94714 -21.49685 -19.83014 -19.61828 -18.64181 -17.50113 -17.19446 -16.50795 -16.28910 -15.83161 -15.63186 -15.32437 -14.90162 -14.66722 -14.61018 -13.92860 -13.82511 -13.64075 -13.43110 -13.06337 -12.96244 -12.79048 -12.58021 -12.27333 -12.11511 -12.03594 -11.84784 -11.68115 -11.63592 -11.52795 -11.43294 -11.28826 -11.09903 -10.97958 -10.86861 -10.82530 -10.33539 -10.03871 -9.86885 -9.83693 -9.68537 -9.61926 -9.54060 -9.01908 -8.75387 -8.02308 -6.85600 -5.85444 -3.21288 3.10990 3.12868 3.34806 3.40562 3.42794 3.55385 3.92874 4.12466 4.39682 4.50668 4.61262 4.79410 4.87358 4.89586 4.94889 5.01903 5.15725 5.20134 5.22688 5.26814 5.30771 5.33831 5.43450 5.52198 5.56850 5.61105 5.62509 5.69095 5.73165 5.76367 5.80447 5.84303 5.94204 6.16410 6.23132 6.31756 6.39355 6.52136 6.63207 6.70530 6.79703 6.81941 6.86655 6.98234 7.17205 7.30861 7.50307 7.69786 8.09456 8.13095 8.76116 9.03891 9.66203 10.42629 11.27461 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002485 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.409091 B =11265.028816 C =11389.864563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.080 0.920 4 O -0.348 6.348 5 C 0.061 3.939 6 C 0.085 3.915 7 H 0.081 0.919 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.509 3.491 13 O -0.537 6.537 14 N -0.590 5.590 15 C 0.092 3.908 16 C 0.133 3.867 17 H 0.079 0.921 18 C -0.123 4.123 19 C -0.137 4.137 20 C 0.169 3.831 21 H 0.118 0.882 22 C 0.113 3.887 23 N -0.583 5.583 24 C -0.228 4.228 25 H 0.077 0.923 26 C -0.002 4.002 27 N -0.911 5.911 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 5.348 21.592 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.097 0.903 4 O -0.266 6.266 5 C -0.016 4.016 6 C 0.027 3.973 7 H 0.099 0.901 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.287 6.287 12 C 0.295 3.705 13 O -0.414 6.414 14 N -0.324 5.324 15 C -0.033 4.033 16 C 0.024 3.976 17 H 0.097 0.903 18 C -0.162 4.162 19 C -0.177 4.177 20 C 0.062 3.938 21 H 0.136 0.864 22 C -0.009 4.009 23 N -0.304 5.304 24 C -0.356 4.356 25 H 0.095 0.905 26 C -0.200 4.200 27 N -0.557 5.557 28 Si 0.743 3.257 29 H -0.216 1.216 30 H -0.218 1.218 31 H -0.206 1.206 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.459 4.369 21.242 21.736 hybrid contribution -0.370 0.629 -0.622 0.959 sum 1.088 4.998 20.620 21.245 Atomic orbital electron populations 1.22258 0.93758 1.03842 1.02981 1.21910 0.95132 0.95931 0.85883 0.90277 1.88111 1.86511 1.33458 1.18501 1.22727 1.00022 0.92615 0.86232 1.22976 0.91608 0.90209 0.92508 0.90096 1.23296 1.03317 0.98378 0.93738 1.23155 0.99774 0.97480 0.98867 1.23136 0.98422 0.99480 0.81911 1.88560 1.54326 1.65948 1.19895 1.20161 0.80262 0.86023 0.84101 1.90664 1.41855 1.22886 1.86007 1.48141 1.60011 1.18543 1.05664 1.22634 0.97989 0.83483 0.99191 1.21950 0.93171 0.95097 0.87356 0.90315 1.22476 0.97293 0.98180 0.98230 1.22650 0.99136 0.96950 0.98933 1.21794 0.87578 0.88537 0.95939 0.86418 1.22336 1.00887 0.94846 0.82863 1.45151 1.52054 1.26384 1.06821 1.18998 1.29588 0.96240 0.90810 0.90548 1.24850 1.01010 0.94995 0.99129 1.69852 1.52816 1.00263 1.32786 0.86108 0.78239 0.77268 0.84118 1.21625 1.21754 1.20631 0.90457 0.91091 0.91781 0.92575 0.92004 0.89446 0.90041 0.89940 0.90346 0.91415 0.91426 0.91412 0.91881 0.92638 0.93271 0.92847 0.92759 0.91248 0.90166 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.22 37.16 0.34 -1.90 16 2 C 0.07 1.09 2.30 -27.88 -0.06 1.03 16 3 H 0.08 0.99 6.63 -51.93 -0.34 0.65 16 4 O -0.35 -5.62 9.53 -57.75 -0.55 -6.17 16 5 C 0.06 0.70 5.45 37.16 0.20 0.90 16 6 C 0.08 0.92 3.72 -25.70 -0.10 0.82 16 7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.15 -1.05 6.59 -24.34 -0.16 -1.21 16 9 C -0.16 -0.99 7.03 -24.64 -0.17 -1.16 16 10 C 0.05 0.41 7.80 37.88 0.30 0.70 16 11 O -0.37 -4.73 11.04 -35.96 -0.40 -5.13 16 12 C 0.51 9.82 7.07 -10.99 -0.08 9.75 16 13 O -0.54 -12.53 15.98 -14.25 -0.23 -12.76 16 14 N -0.59 -11.34 2.26 -171.81 -0.39 -11.73 16 15 C 0.09 1.56 4.32 -3.22 -0.01 1.55 16 16 C 0.13 2.47 4.32 -65.67 -0.28 2.19 16 17 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 18 C -0.12 -2.10 6.18 -25.25 -0.16 -2.26 16 19 C -0.14 -2.68 6.18 -25.25 -0.16 -2.83 16 20 C 0.17 3.83 3.11 -65.90 -0.20 3.62 16 21 H 0.12 3.04 6.39 -51.93 -0.33 2.71 16 22 C 0.11 2.52 5.79 -3.46 -0.02 2.50 16 23 N -0.58 -13.53 2.81 -152.88 -0.43 -13.96 16 24 C -0.23 -5.86 10.37 -15.06 -0.16 -6.01 16 25 H 0.08 1.91 7.85 -52.49 -0.41 1.49 16 26 C 0.00 -0.06 5.41 -17.43 -0.09 -0.16 16 27 N -0.91 -24.95 10.41 55.49 0.58 -24.38 16 28 Si 0.91 21.06 29.56 -169.99 -5.03 16.04 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 31 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 32 H 0.08 0.99 6.05 -51.93 -0.31 0.67 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.68 7.99 -51.93 -0.41 0.27 16 35 H 0.06 0.57 7.99 -51.93 -0.41 0.16 16 36 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 44 H 0.06 0.84 5.46 -51.93 -0.28 0.56 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 49 H 0.07 1.59 7.08 -51.93 -0.37 1.22 16 50 H 0.08 2.02 7.79 -51.93 -0.40 1.61 16 51 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -31.97 390.50 -10.09 -42.05 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.72 Total: 2.61 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.82 Total: 7.54 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.24 Total: -50.06 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -1.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.97 -10.09 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481391311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.914 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds