Wall clock time and date at job start Tue Mar 31 2020 21:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47034 * 2 1 4 4 O 1.42902 * 109.47276 * 119.99727 * 2 1 3 5 5 C 1.42900 * 114.00086 * 270.00104 * 4 2 1 6 6 C 1.53005 * 109.46982 * 179.97438 * 5 4 2 7 7 H 1.08992 * 110.27520 * 54.30308 * 6 5 4 8 8 C 1.54950 * 110.30537 * 176.39139 * 6 5 4 9 9 C 1.55566 * 100.82436 * 155.40843 * 8 6 5 10 10 C 1.54384 * 102.27338 * 325.88172 * 9 8 6 11 11 O 1.43239 * 107.58980 * 21.35632 * 10 9 8 12 12 C 1.50700 * 109.47142 * 239.99700 * 2 1 3 13 13 O 1.21283 * 119.99972 * 247.42380 * 12 2 1 14 14 N 1.34771 * 119.99798 * 67.42301 * 12 2 1 15 15 C 1.47163 * 120.71284 * 4.71271 * 14 12 2 16 16 C 1.53882 * 108.03052 * 132.73026 * 15 14 12 17 17 H 1.09008 * 112.09836 * 182.54709 * 16 15 14 18 18 C 1.54550 * 107.83387 * 306.50738 * 16 15 14 19 19 C 1.54272 * 104.84963 * 89.07411 * 18 16 15 20 20 C 1.54544 * 104.85021 * 359.97438 * 19 18 16 21 21 H 1.09001 * 112.18297 * 146.41315 * 20 19 18 22 22 C 1.47168 * 120.70927 * 184.42563 * 14 12 2 23 23 N 1.48305 * 104.35697 * 24.70490 * 20 19 18 24 24 C 1.36939 * 128.08003 * 139.08452 * 23 20 19 25 25 H 1.08000 * 119.99789 * 195.21309 * 24 23 20 26 26 C 1.38812 * 119.99585 * 15.20464 * 24 23 20 27 27 N 1.31620 * 119.99971 * 9.61311 * 26 24 23 28 28 Si 1.86797 * 119.99740 * 189.60974 * 26 24 23 29 29 H 1.48505 * 109.47170 * 94.97365 * 28 26 24 30 30 H 1.48502 * 109.47421 * 214.97131 * 28 26 24 31 31 H 1.48503 * 109.47498 * 334.97344 * 28 26 24 32 32 H 1.08995 * 109.47502 * 64.94788 * 1 2 3 33 33 H 1.09002 * 109.47315 * 184.95252 * 1 2 3 34 34 H 1.09002 * 109.47215 * 304.94898 * 1 2 3 35 35 H 1.09005 * 109.47004 * 60.00263 * 5 4 2 36 36 H 1.08997 * 109.46865 * 299.99793 * 5 4 2 37 37 H 1.09004 * 111.12119 * 273.37510 * 8 6 5 38 38 H 1.08995 * 111.12617 * 37.53773 * 8 6 5 39 39 H 1.08994 * 110.83387 * 207.68008 * 9 8 6 40 40 H 1.08999 * 111.00831 * 84.15297 * 9 8 6 41 41 H 1.09005 * 109.82831 * 261.84362 * 10 9 8 42 42 H 1.09001 * 109.82926 * 140.86933 * 10 9 8 43 43 H 1.08996 * 109.75208 * 252.36665 * 15 14 12 44 44 H 1.09006 * 109.74888 * 13.09714 * 15 14 12 45 45 H 1.09004 * 110.36369 * 207.92118 * 18 16 15 46 46 H 1.09005 * 110.36226 * 330.11915 * 18 16 15 47 47 H 1.09000 * 110.36584 * 118.84803 * 19 18 16 48 48 H 1.09006 * 110.36230 * 241.04828 * 19 18 16 49 49 H 1.08998 * 109.75085 * 346.90367 * 22 14 12 50 50 H 1.09005 * 109.74538 * 107.63159 * 22 14 12 51 51 H 0.97010 * 119.99402 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7080 -0.6407 3.4792 7 1 3.6005 -1.1988 3.1965 8 6 3.0111 0.2832 4.6857 9 6 2.8620 -0.7193 5.8660 10 6 1.7371 -1.6506 5.3655 11 8 1.6840 -1.5372 3.9386 12 6 2.0323 -0.7105 -1.2304 13 8 2.6146 -1.7690 -1.1242 14 7 1.8345 -0.1695 -2.4488 15 6 1.2224 1.1613 -2.5899 16 6 2.0741 1.9747 -3.5804 17 1 1.7030 2.9926 -3.7007 18 6 3.5374 1.9420 -3.0844 19 6 4.1495 0.6872 -3.7409 20 6 3.0003 0.0753 -4.5735 21 1 3.3609 -0.4005 -5.4855 22 6 2.2316 -0.8944 -3.6665 23 7 2.1013 1.2203 -4.8567 24 6 1.4487 1.5130 -6.0245 25 1 1.0259 2.4953 -6.1752 26 6 1.3308 0.5472 -7.0145 27 7 1.6743 -0.6983 -6.7631 28 14 0.6845 1.0151 -8.7035 29 1 1.8266 1.2978 -9.6097 30 1 -0.1186 -0.1060 -9.2543 31 1 -0.1682 2.2255 -8.5895 32 1 -0.3634 0.4351 -0.9309 33 1 -0.3634 -1.0238 0.0887 34 1 -0.3634 0.5887 0.8423 35 1 1.2537 0.6547 2.5589 36 1 2.9320 0.9514 2.0450 37 1 4.0246 0.6806 4.6311 38 1 2.2790 1.0874 4.7583 39 1 2.5614 -0.2029 6.7775 40 1 3.7853 -1.2766 6.0243 41 1 0.7840 -1.3440 5.7966 42 1 1.9572 -2.6805 5.6466 43 1 0.2070 1.0610 -2.9732 44 1 1.2036 1.6626 -1.6222 45 1 4.0681 2.8371 -3.4089 46 1 3.5679 1.8569 -1.9981 47 1 4.9812 0.9653 -4.3883 48 1 4.4827 -0.0160 -2.9776 49 1 2.8720 -1.7358 -3.4019 50 1 1.3440 -1.2554 -4.1862 51 1 1.5916 -1.3733 -7.4549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481391311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:05 Heat of formation + Delta-G solvation = -104.332943 kcal Electronic energy + Delta-G solvation = -31275.371129 eV Core-core repulsion = 27175.196133 eV Total energy + Delta-G solvation = -4100.174996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.74217 -40.49882 -39.67002 -38.24601 -35.56010 -34.24890 -33.28123 -32.95055 -31.99393 -31.11002 -30.84300 -27.98872 -26.55968 -25.81295 -25.45130 -24.33697 -22.53482 -22.25581 -21.33084 -21.23116 -20.27560 -18.79627 -18.22901 -17.80598 -17.53036 -17.15003 -16.76136 -16.48794 -16.36043 -16.15778 -15.69235 -15.48448 -15.03137 -14.89894 -14.67349 -14.46398 -14.26153 -14.09199 -13.65763 -13.55346 -13.33677 -13.23534 -13.16902 -12.98020 -12.87402 -12.71544 -12.63627 -12.57750 -12.43826 -12.16522 -12.04517 -11.96047 -11.80490 -11.66761 -11.51124 -11.46082 -11.11061 -10.88231 -10.73964 -10.46740 -10.37168 -9.72494 -8.70119 -7.83618 -5.19362 1.49755 1.51017 1.59185 1.62835 1.82873 2.51813 2.75468 2.90850 3.36173 3.45652 3.52837 3.57795 3.83409 3.94669 3.99441 4.02261 4.09119 4.14113 4.16790 4.25425 4.28812 4.33148 4.38354 4.41180 4.50159 4.60609 4.60746 4.67235 4.70179 4.80481 4.83322 4.88479 4.90655 4.98265 4.99740 5.02797 5.07865 5.09748 5.13986 5.19506 5.25927 5.28502 5.41222 5.54627 5.59437 5.83201 6.05997 6.21008 6.24056 6.60741 7.06724 7.23563 7.74833 8.53407 9.28226 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002485 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.409091 B =11265.028816 C =11389.864563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 H 0.119 0.881 4 O -0.385 6.385 5 C 0.054 3.946 6 C 0.074 3.926 7 H 0.060 0.940 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.036 3.964 11 O -0.406 6.406 12 C 0.502 3.498 13 O -0.587 6.587 14 N -0.588 5.588 15 C 0.095 3.905 16 C 0.127 3.873 17 H 0.103 0.897 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.167 3.833 21 H 0.076 0.924 22 C 0.129 3.871 23 N -0.603 5.603 24 C -0.227 4.227 25 H 0.086 0.914 26 C -0.060 4.060 27 N -0.940 5.940 28 Si 0.971 3.029 29 H -0.293 1.293 30 H -0.303 1.303 31 H -0.266 1.266 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.049 0.951 49 H 0.050 0.950 50 H 0.041 0.959 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 9.197 24.436 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.136 0.864 4 O -0.304 6.304 5 C -0.022 4.022 6 C 0.017 3.983 7 H 0.078 0.922 8 C -0.176 4.176 9 C -0.186 4.186 10 C -0.040 4.040 11 O -0.326 6.326 12 C 0.291 3.709 13 O -0.468 6.468 14 N -0.321 5.321 15 C -0.029 4.029 16 C 0.020 3.980 17 H 0.121 0.879 18 C -0.150 4.150 19 C -0.169 4.169 20 C 0.060 3.940 21 H 0.094 0.906 22 C 0.005 3.995 23 N -0.324 5.324 24 C -0.356 4.356 25 H 0.104 0.896 26 C -0.254 4.254 27 N -0.588 5.588 28 Si 0.801 3.199 29 H -0.221 1.221 30 H -0.231 1.231 31 H -0.190 1.190 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.161 8.281 24.129 25.537 hybrid contribution -0.271 -0.620 -1.437 1.588 sum 0.890 7.661 22.693 23.968 Atomic orbital electron populations 1.22248 0.92265 1.03093 1.04680 1.21905 0.95960 0.96545 0.83525 0.86409 1.88091 1.86814 1.35746 1.19712 1.23042 1.01676 0.92667 0.84778 1.23125 0.90485 0.90732 0.94003 0.92196 1.23292 1.04704 0.97963 0.91650 1.23165 0.98981 0.96985 0.99513 1.23351 1.00058 1.00228 0.80356 1.88518 1.55057 1.66858 1.22208 1.21129 0.79045 0.85566 0.85189 1.90638 1.44073 1.25286 1.86776 1.48135 1.59872 1.19295 1.04759 1.22746 0.96726 0.82013 1.01378 1.22275 0.94560 0.95806 0.85395 0.87950 1.22431 0.95886 0.97164 0.99542 1.22523 0.97922 0.98062 0.98439 1.21570 0.88877 0.88748 0.94836 0.90571 1.21819 0.98720 0.94757 0.84215 1.45329 1.52092 1.26831 1.08182 1.19353 1.28257 0.96288 0.91692 0.89623 1.25565 1.02432 0.95120 1.02240 1.70059 1.54723 1.01024 1.33018 0.85169 0.77410 0.76885 0.80451 1.22077 1.23054 1.19038 0.89971 0.93534 0.88382 0.90881 0.89476 0.87745 0.88593 0.87622 0.90074 0.90381 0.91680 0.92441 0.86795 0.90885 0.90605 0.92743 0.93211 0.93165 0.94074 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 9.22 71.98 0.66 -3.19 16 2 C 0.08 2.21 2.30 29.85 0.07 2.28 16 3 H 0.12 2.27 6.63 -2.39 -0.02 2.25 16 4 O -0.38 -11.78 9.53 -127.45 -1.21 -12.99 16 5 C 0.05 1.08 5.45 71.98 0.39 1.47 16 6 C 0.07 1.48 3.72 31.26 0.12 1.60 16 7 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 8 C -0.14 -1.49 6.59 32.15 0.21 -1.27 16 9 C -0.15 -1.49 7.03 31.95 0.22 -1.27 16 10 C 0.04 0.58 7.80 72.45 0.56 1.15 16 11 O -0.41 -10.19 11.04 -148.28 -1.64 -11.83 16 12 C 0.50 19.08 7.07 87.66 0.62 19.70 16 13 O -0.59 -28.23 15.98 15.89 0.25 -27.98 16 14 N -0.59 -22.27 2.26 -815.88 -1.85 -24.12 16 15 C 0.10 2.93 4.32 86.55 0.37 3.30 16 16 C 0.13 4.31 4.32 45.47 0.20 4.51 16 17 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 18 C -0.11 -3.42 6.18 31.55 0.20 -3.22 16 19 C -0.13 -4.99 6.18 31.55 0.20 -4.79 16 20 C 0.17 7.82 3.11 45.31 0.14 7.96 16 21 H 0.08 4.19 6.39 -2.39 -0.02 4.18 16 22 C 0.13 6.05 5.79 86.40 0.50 6.55 16 23 N -0.60 -27.74 2.81 -637.59 -1.79 -29.53 16 24 C -0.23 -11.60 10.37 84.03 0.87 -10.73 16 25 H 0.09 4.14 7.85 -2.91 -0.02 4.11 16 26 C -0.06 -3.20 5.41 84.86 0.46 -2.74 16 27 N -0.94 -54.15 10.41 21.65 0.23 -53.92 16 28 Si 0.97 44.12 29.56 68.60 2.03 46.15 16 29 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 30 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 31 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 32 H 0.08 1.83 6.05 -2.39 -0.01 1.81 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.64 7.99 -2.39 -0.02 1.62 16 35 H 0.07 1.19 7.99 -2.38 -0.02 1.17 16 36 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.77 8.06 -2.39 -0.02 0.75 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.93 7.96 -2.39 -0.02 1.91 16 44 H 0.11 2.38 5.46 -2.38 -0.01 2.37 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 1.96 7.84 -2.38 -0.02 1.94 16 47 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.05 1.93 7.84 -2.38 -0.02 1.91 16 49 H 0.05 2.48 7.08 -2.39 -0.02 2.47 16 50 H 0.04 2.22 7.79 -2.38 -0.02 2.20 16 51 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -75.38 390.50 2.72 -72.66 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.91 Total: 20.25 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 5.79 Total: 21.31 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -3.41 Total: -107.57 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.60 Total: -52.79 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.38 2.72 -72.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481391311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.675 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds