Wall clock time and date at job start Tue Mar 31 2020 21:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46655 * 2 1 4 4 O 1.42895 * 109.47425 * 119.99580 * 2 1 3 5 5 C 1.42900 * 114.00453 * 270.00660 * 4 2 1 6 6 C 1.52997 * 109.47410 * 180.02562 * 5 4 2 7 7 H 1.09003 * 110.33002 * 305.69266 * 6 5 4 8 8 C 1.54486 * 110.37309 * 183.44795 * 6 5 4 9 9 C 1.54504 * 104.06025 * 217.18800 * 8 6 5 10 10 C 1.54475 * 104.06457 * 359.97438 * 9 8 6 11 11 O 1.44418 * 110.37588 * 67.94814 * 6 5 4 12 12 C 1.50700 * 109.47318 * 240.00051 * 2 1 3 13 13 O 1.21280 * 119.99550 * 244.99951 * 12 2 1 14 14 N 1.34780 * 119.99982 * 64.99493 * 12 2 1 15 15 C 1.47162 * 120.71027 * 0.02700 * 14 12 2 16 16 C 1.54020 * 108.11600 * 132.68575 * 15 14 12 17 17 H 1.09009 * 112.26989 * 182.62176 * 16 15 14 18 18 C 1.54544 * 107.76090 * 306.64502 * 16 15 14 19 19 C 1.54281 * 104.94359 * 88.95725 * 18 16 15 20 20 C 1.54544 * 104.84789 * 359.94302 * 19 18 16 21 21 H 1.08999 * 112.18100 * 147.02163 * 20 19 18 22 22 C 1.47158 * 120.70721 * 180.02562 * 14 12 2 23 23 N 1.48308 * 104.35777 * 24.70675 * 20 19 18 24 24 C 1.36934 * 128.08031 * 139.04151 * 23 20 19 25 25 H 1.07996 * 120.00545 * 194.82470 * 24 23 20 26 26 C 1.38817 * 120.00137 * 14.81919 * 24 23 20 27 27 N 1.31627 * 119.99625 * 9.26783 * 26 24 23 28 28 Si 1.86797 * 120.00311 * 189.26320 * 26 24 23 29 29 H 1.48503 * 109.46757 * 90.00353 * 28 26 24 30 30 H 1.48497 * 109.47322 * 210.00065 * 28 26 24 31 31 H 1.48495 * 109.47246 * 330.00456 * 28 26 24 32 32 H 1.08996 * 109.47208 * 300.00228 * 1 2 3 33 33 H 1.09000 * 109.47343 * 60.00476 * 1 2 3 34 34 H 1.08997 * 109.47183 * 180.02562 * 1 2 3 35 35 H 1.09009 * 109.46514 * 299.99590 * 5 4 2 36 36 H 1.08997 * 109.47042 * 59.99214 * 5 4 2 37 37 H 1.08998 * 110.50502 * 335.83495 * 8 6 5 38 38 H 1.09005 * 110.51166 * 98.40127 * 8 6 5 39 39 H 1.08997 * 110.51219 * 118.64433 * 9 8 6 40 40 H 1.09010 * 110.50596 * 241.35344 * 9 8 6 41 41 H 1.09007 * 110.36963 * 142.81255 * 10 9 8 42 42 H 1.08996 * 110.37341 * 265.03431 * 10 9 8 43 43 H 1.08996 * 109.74870 * 252.36863 * 15 14 12 44 44 H 1.09005 * 109.75056 * 13.09539 * 15 14 12 45 45 H 1.08999 * 110.36328 * 330.05907 * 18 16 15 46 46 H 1.08997 * 110.36477 * 207.84772 * 18 16 15 47 47 H 1.08995 * 110.36788 * 118.79279 * 19 18 16 48 48 H 1.08996 * 110.36035 * 241.10550 * 19 18 16 49 49 H 1.08991 * 109.75411 * 107.63372 * 22 14 12 50 50 H 1.09004 * 109.79341 * 346.91941 * 22 14 12 51 51 H 0.96995 * 119.99416 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7091 -0.6404 3.4788 7 1 2.0371 -1.4756 3.6762 8 6 2.8437 0.2498 4.7342 9 6 4.1154 -0.2788 5.4346 10 6 4.5983 -1.4261 4.5200 11 8 4.0460 -1.1212 3.2195 12 6 2.0324 -0.7104 -1.2305 13 8 2.6530 -1.7466 -1.1214 14 7 1.7919 -0.1942 -2.4520 15 6 1.0409 1.0624 -2.6024 16 6 1.8110 1.9662 -3.5834 17 1 1.3351 2.9387 -3.7096 18 6 3.2633 2.0895 -3.0698 19 6 4.0159 0.9084 -3.7170 20 6 2.9502 0.1758 -4.5631 21 1 3.3736 -0.2673 -5.4645 22 6 2.2747 -0.8751 -3.6640 23 7 1.9361 1.2167 -4.8591 24 6 1.2710 1.4376 -6.0354 25 1 0.7409 2.3658 -6.1901 26 6 1.2780 0.4686 -7.0293 27 7 1.7641 -0.7285 -6.7778 28 14 0.5976 0.8633 -8.7236 29 1 1.6857 1.3969 -9.5819 30 1 0.0453 -0.3720 -9.3354 31 1 -0.4788 1.8787 -8.6005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 2.9320 0.9515 2.0449 36 1 1.2537 0.6547 2.5588 37 1 2.9704 1.2943 4.4498 38 1 1.9731 0.1336 5.3799 39 1 4.8708 0.5045 5.4966 40 1 3.8747 -0.6581 6.4278 41 1 5.6874 -1.4430 4.4753 42 1 4.2192 -2.3829 4.8790 43 1 0.0470 0.8525 -2.9977 44 1 0.9560 1.5588 -1.6356 45 1 3.2898 2.0064 -1.9833 46 1 3.6990 3.0367 -3.3878 47 1 4.8203 1.2749 -4.3547 48 1 4.4123 0.2446 -2.9488 49 1 1.4350 -1.3270 -4.1919 50 1 2.9962 -1.6456 -3.3918 51 1 1.7687 -1.4057 -7.4722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481391316.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:12 Heat of formation + Delta-G solvation = -82.750382 kcal Electronic energy + Delta-G solvation = -31364.928108 eV Core-core repulsion = 27265.689002 eV Total energy + Delta-G solvation = -4099.239106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.23356 -39.63966 -38.26911 -36.92300 -33.91402 -32.50886 -32.38342 -31.86059 -30.62711 -29.86135 -29.22276 -26.41509 -25.69355 -24.21987 -23.85678 -22.91786 -22.18408 -21.29348 -19.81551 -19.60352 -18.65265 -17.45375 -16.84046 -16.53761 -16.23036 -15.89480 -15.73192 -15.51660 -14.73108 -14.66777 -14.65103 -13.98826 -13.80085 -13.59977 -13.53202 -13.02556 -12.92090 -12.83017 -12.59729 -12.13961 -12.11174 -12.03876 -11.80660 -11.64571 -11.62503 -11.51303 -11.35893 -11.19746 -11.00833 -10.91040 -10.86058 -10.81168 -10.32450 -10.03203 -9.92260 -9.85426 -9.84445 -9.60928 -9.52834 -9.01338 -8.74142 -8.01064 -6.84352 -5.83940 -3.19896 3.11529 3.15447 3.35521 3.41030 3.43181 3.66336 3.93127 4.27944 4.40470 4.52608 4.61198 4.76269 4.87200 4.91251 4.99341 5.07458 5.12324 5.18378 5.23148 5.25996 5.31478 5.38309 5.48853 5.55105 5.57315 5.58524 5.64547 5.68593 5.69939 5.74300 5.77307 5.80687 5.94410 6.13400 6.21504 6.32690 6.40704 6.53531 6.64308 6.65831 6.71442 6.81320 6.88285 6.98410 7.16017 7.31939 7.51221 7.71106 8.10761 8.14194 8.78591 9.05170 9.67227 10.43662 11.28742 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.002563 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.223675 B =10923.392695 C =11010.428007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.081 0.919 4 O -0.349 6.349 5 C 0.065 3.935 6 C 0.078 3.922 7 H 0.077 0.923 8 C -0.149 4.149 9 C -0.154 4.154 10 C 0.040 3.960 11 O -0.356 6.356 12 C 0.508 3.492 13 O -0.535 6.535 14 N -0.590 5.590 15 C 0.091 3.909 16 C 0.133 3.867 17 H 0.079 0.921 18 C -0.123 4.123 19 C -0.137 4.137 20 C 0.169 3.831 21 H 0.119 0.881 22 C 0.114 3.886 23 N -0.583 5.583 24 C -0.228 4.228 25 H 0.077 0.923 26 C -0.003 4.003 27 N -0.912 5.912 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 5.024 21.778 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.098 0.902 4 O -0.266 6.266 5 C -0.012 4.012 6 C 0.020 3.980 7 H 0.095 0.905 8 C -0.186 4.186 9 C -0.192 4.192 10 C -0.037 4.037 11 O -0.275 6.275 12 C 0.294 3.706 13 O -0.412 6.412 14 N -0.324 5.324 15 C -0.034 4.034 16 C 0.024 3.976 17 H 0.097 0.903 18 C -0.162 4.162 19 C -0.176 4.176 20 C 0.062 3.938 21 H 0.137 0.863 22 C -0.009 4.009 23 N -0.304 5.304 24 C -0.356 4.356 25 H 0.094 0.906 26 C -0.200 4.200 27 N -0.558 5.558 28 Si 0.743 3.257 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.745 4.129 21.347 21.756 hybrid contribution -0.619 0.497 -0.562 0.973 sum 0.126 4.627 20.786 21.295 Atomic orbital electron populations 1.22377 0.93930 1.03879 1.03180 1.21892 0.94830 0.96139 0.85986 0.90155 1.88096 1.86517 1.33396 1.18640 1.22633 0.99250 0.92910 0.86386 1.22970 0.86110 0.96046 0.92862 0.90485 1.22926 0.98683 1.00651 0.96386 1.22934 0.97613 0.99092 0.99578 1.23435 0.99697 0.97026 0.83520 1.89341 1.26816 1.85149 1.26185 1.20150 0.80685 0.85720 0.84073 1.90675 1.40790 1.23653 1.86036 1.48141 1.54312 1.24234 1.05693 1.22693 0.96065 0.85458 0.99196 1.22025 0.93669 0.94549 0.87360 0.90265 1.22477 0.97087 0.98391 0.98243 1.22643 0.98729 0.97331 0.98945 1.21893 0.87455 0.88691 0.95788 0.86342 1.22445 0.99858 0.95610 0.82997 1.45182 1.44439 1.34395 1.06402 1.18992 1.26746 0.99728 0.90150 0.90559 1.24846 1.01049 0.95075 0.99043 1.69844 1.50531 1.02739 1.32647 0.86123 0.78411 0.77040 0.84141 1.21599 1.21744 1.20703 0.91785 0.90045 0.91225 0.92408 0.91921 0.90363 0.90131 0.90548 0.90478 0.89065 0.92256 0.91404 0.91694 0.93266 0.92632 0.92806 0.92778 0.90280 0.91283 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.14 37.16 0.34 -1.83 16 2 C 0.07 1.09 2.30 -27.88 -0.06 1.03 16 3 H 0.08 1.03 6.97 -51.92 -0.36 0.67 16 4 O -0.35 -5.61 9.52 -57.48 -0.55 -6.15 16 5 C 0.07 0.75 5.35 37.16 0.20 0.95 16 6 C 0.08 0.85 3.57 -25.95 -0.09 0.76 16 7 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 8 C -0.15 -1.08 6.63 -25.16 -0.17 -1.25 16 9 C -0.15 -1.05 7.09 -25.17 -0.18 -1.23 16 10 C 0.04 0.37 7.63 37.93 0.29 0.66 16 11 O -0.36 -4.89 11.35 -35.63 -0.40 -5.30 16 12 C 0.51 9.93 7.12 -10.98 -0.08 9.85 16 13 O -0.53 -12.71 15.98 -14.31 -0.23 -12.94 16 14 N -0.59 -11.44 2.25 -171.43 -0.39 -11.82 16 15 C 0.09 1.54 4.29 -3.15 -0.01 1.53 16 16 C 0.13 2.48 4.35 -65.50 -0.28 2.19 16 17 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 18 C -0.12 -2.14 6.17 -25.25 -0.16 -2.29 16 19 C -0.14 -2.71 6.18 -25.25 -0.16 -2.87 16 20 C 0.17 3.87 3.12 -65.64 -0.20 3.66 16 21 H 0.12 3.08 6.36 -51.93 -0.33 2.75 16 22 C 0.11 2.55 5.82 -3.20 -0.02 2.53 16 23 N -0.58 -13.61 2.81 -152.37 -0.43 -14.03 16 24 C -0.23 -5.87 10.37 -15.06 -0.16 -6.03 16 25 H 0.08 1.91 7.85 -52.49 -0.41 1.49 16 26 C 0.00 -0.07 5.42 -17.43 -0.09 -0.17 16 27 N -0.91 -25.07 10.44 55.49 0.58 -24.49 16 28 Si 0.91 21.13 29.56 -169.99 -5.03 16.10 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 31 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 32 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 33 H 0.08 0.97 5.43 -51.93 -0.28 0.69 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 36 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 37 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 41 H 0.09 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.21 8.01 -51.93 -0.42 0.80 16 44 H 0.06 0.86 5.07 -51.93 -0.26 0.60 16 45 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.05 1.08 7.84 -51.93 -0.41 0.67 16 49 H 0.08 2.00 7.85 -51.93 -0.41 1.59 16 50 H 0.07 1.60 7.11 -51.93 -0.37 1.23 16 51 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -32.46 389.55 -10.07 -42.54 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.67 Total: 2.73 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.84 Total: 7.51 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.23 Total: -50.35 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.18 Total: -24.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.46 -10.07 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481391316.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.213 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds