Wall clock time and date at job start Tue Mar 31 2020 21:45:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47279 * 2 1
4 4 O 1.42899 * 109.47464 * 239.99514 * 2 1 3
5 5 C 1.42905 * 113.99816 * 90.00077 * 4 2 1
6 6 C 1.52993 * 109.46893 * 180.02562 * 5 4 2
7 7 H 1.09005 * 110.55438 * 307.88102 * 6 5 4
8 8 C 1.54998 * 110.61923 * 184.99730 * 6 5 4
9 9 C 1.54810 * 102.09631 * 204.31717 * 8 6 5
10 10 C 1.54109 * 104.18489 * 20.87983 * 9 8 6
11 11 O 1.43745 * 107.41885 * 1.95591 * 10 9 8
12 12 C 1.50705 * 109.47063 * 119.99678 * 2 1 3
13 13 O 1.21273 * 120.00120 * 101.34246 * 12 2 1
14 14 N 1.34777 * 119.99687 * 281.34267 * 12 2 1
15 15 C 1.47166 * 120.71307 * 4.95378 * 14 12 2
16 16 C 1.54312 * 107.80701 * 132.67719 * 15 14 12
17 17 H 1.08995 * 112.53232 * 182.37297 * 16 15 14
18 18 C 1.54547 * 107.98528 * 306.73741 * 16 15 14
19 19 C 1.54278 * 104.84555 * 89.01677 * 18 16 15
20 20 C 1.54543 * 104.85399 * 0.02562 * 19 18 16
21 21 H 1.08999 * 112.68353 * 146.68492 * 20 19 18
22 22 C 1.47166 * 120.70837 * 185.22168 * 14 12 2
23 23 N 1.48306 * 107.10251 * 58.61820 * 16 15 14
24 24 C 1.36937 * 128.07899 * 106.57615 * 23 16 15
25 25 H 1.08001 * 120.00202 * 164.79338 * 24 23 16
26 26 C 1.38814 * 119.99671 * 344.78555 * 24 23 16
27 27 N 1.31613 * 120.00413 * 351.36169 * 26 24 23
28 28 Si 1.86808 * 119.99796 * 171.36181 * 26 24 23
29 29 H 1.48502 * 109.46913 * 94.97598 * 28 26 24
30 30 H 1.48495 * 109.47205 * 214.97382 * 28 26 24
31 31 H 1.48496 * 109.47016 * 334.97407 * 28 26 24
32 32 H 1.08996 * 109.47112 * 178.73796 * 1 2 3
33 33 H 1.09003 * 109.47104 * 298.74232 * 1 2 3
34 34 H 1.09000 * 109.46865 * 58.73964 * 1 2 3
35 35 H 1.09001 * 109.47032 * 60.00339 * 5 4 2
36 36 H 1.09005 * 109.46707 * 300.00112 * 5 4 2
37 37 H 1.09000 * 110.90348 * 86.12223 * 8 6 5
38 38 H 1.08992 * 110.90839 * 322.51869 * 8 6 5
39 39 H 1.09006 * 110.48669 * 262.20725 * 9 8 6
40 40 H 1.08999 * 110.48882 * 139.55855 * 9 8 6
41 41 H 1.08998 * 109.87234 * 121.45594 * 10 9 8
42 42 H 1.08999 * 109.87458 * 242.45325 * 10 9 8
43 43 H 1.09005 * 109.74358 * 252.38377 * 15 14 12
44 44 H 1.09001 * 109.74678 * 13.10929 * 15 14 12
45 45 H 1.09004 * 110.36041 * 207.85813 * 18 16 15
46 46 H 1.08997 * 110.36433 * 330.06796 * 18 16 15
47 47 H 1.09000 * 110.36483 * 241.15503 * 19 18 16
48 48 H 1.08997 * 110.36524 * 118.84427 * 19 18 16
49 49 H 1.08996 * 109.75047 * 346.88293 * 22 14 12
50 50 H 1.08999 * 109.74778 * 107.61292 * 22 14 12
51 51 H 0.97003 * 120.00516 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.2002 0.1828 -2.2941
6 6 2.7081 -0.6410 -3.4790
7 1 3.5781 -1.2307 -3.1903
8 6 3.0467 0.2800 -4.6789
9 6 2.9093 -0.6877 -5.8794
10 6 2.0229 -1.8293 -5.3448
11 8 1.6634 -1.4980 -3.9931
12 6 2.0324 -0.7104 1.2305
13 8 2.4292 -1.8536 1.1512
14 7 2.0405 -0.0751 2.4192
15 6 1.4633 1.2718 2.5556
16 6 0.5581 1.2730 3.8053
17 1 0.0559 2.2284 3.9563
18 6 -0.4422 0.1026 3.6710
19 6 0.2736 -1.1047 4.3113
20 6 1.6413 -0.5542 4.7749
21 1 2.0008 -1.0340 5.6852
22 6 2.6321 -0.7111 3.6072
23 7 1.4093 0.8986 4.9607
24 6 1.8726 1.7058 5.9651
25 1 2.2732 1.2688 6.8678
26 6 1.8274 3.0859 5.8228
27 7 1.5007 3.6178 4.6641
28 14 2.2303 4.1883 7.2761
29 1 3.6605 4.5836 7.2159
30 1 1.3784 5.4036 7.2268
31 1 1.9725 3.4541 8.5408
32 1 -0.3633 -1.0274 -0.0226
33 1 -0.3633 0.4942 0.9011
34 1 -0.3633 0.5333 -0.8785
35 1 2.9321 0.9512 -2.0450
36 1 1.2538 0.6545 -2.5588
37 1 4.0648 0.6613 -4.6012
38 1 2.3310 1.0985 -4.7551
39 1 3.8864 -1.0698 -6.1752
40 1 2.4240 -0.1886 -6.7182
41 1 1.1249 -1.9185 -5.9561
42 1 2.5772 -2.7677 -5.3616
43 1 2.2618 2.0043 2.6745
44 1 0.8724 1.5105 1.6713
45 1 -1.3630 0.3270 4.2096
46 1 -0.6564 -0.0947 2.6207
47 1 0.4129 -1.8970 3.5758
48 1 -0.2951 -1.4741 5.1647
49 1 2.8054 -1.7691 3.4107
50 1 3.5744 -0.2228 3.8556
51 1 1.4695 4.5822 4.5646
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001481391317.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:45:15
Heat of formation + Delta-G solvation = -84.781064 kcal
Electronic energy + Delta-G solvation = -31339.687009 eV
Core-core repulsion = 27240.359847 eV
Total energy + Delta-G solvation = -4099.327163 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.24370 -39.63063 -38.25971 -36.94121 -33.79611 -32.61777 -32.41032 -31.88524
-30.64539 -29.78148 -29.26741 -26.36138 -25.72855 -24.42328 -23.72637 -22.87488
-21.87988 -21.47709 -19.82531 -19.69143 -18.60177 -17.42597 -17.12901 -16.46379
-16.14390 -15.75982 -15.68512 -15.21634 -15.17625 -14.76049 -14.55847 -13.93910
-13.77827 -13.63462 -13.47419 -13.04443 -12.95958 -12.86951 -12.43701 -12.19962
-12.13278 -12.02152 -11.77574 -11.66487 -11.64196 -11.53386 -11.41128 -11.16731
-10.98338 -10.93364 -10.85292 -10.78040 -10.35872 -10.07002 -9.86124 -9.83166
-9.77274 -9.60053 -9.55509 -9.10130 -8.76056 -8.04521 -6.86758 -5.89212
-3.23236 3.02662 3.18646 3.32621 3.39719 3.40620 3.62043 3.94397
4.25351 4.38886 4.55232 4.63450 4.82847 4.91297 4.97250 5.04103
5.09479 5.18691 5.24621 5.26161 5.29909 5.32569 5.40800 5.48181
5.57842 5.63247 5.67490 5.70507 5.73955 5.78272 5.81246 5.84081
5.90982 5.96307 6.12782 6.19257 6.35419 6.42004 6.55894 6.61192
6.64643 6.70260 6.74001 6.88772 6.91950 7.15791 7.26422 7.44980
7.62685 8.06472 8.11490 8.72808 9.02052 9.63918 10.40941 11.24285
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.020110 B = 0.002679 C = 0.002523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1391.993827 B =10451.016545 C =11097.054655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.074 3.926
3 H 0.081 0.919
4 O -0.352 6.352
5 C 0.065 3.935
6 C 0.080 3.920
7 H 0.080 0.920
8 C -0.148 4.148
9 C -0.155 4.155
10 C 0.044 3.956
11 O -0.364 6.364
12 C 0.511 3.489
13 O -0.543 6.543
14 N -0.591 5.591
15 C 0.097 3.903
16 C 0.169 3.831
17 H 0.120 0.880
18 C -0.139 4.139
19 C -0.123 4.123
20 C 0.134 3.866
21 H 0.078 0.922
22 C 0.103 3.897
23 N -0.584 5.584
24 C -0.222 4.222
25 H 0.077 0.923
26 C -0.004 4.004
27 N -0.917 5.917
28 Si 0.912 3.088
29 H -0.289 1.289
30 H -0.290 1.290
31 H -0.281 1.281
32 H 0.070 0.930
33 H 0.082 0.918
34 H 0.065 0.935
35 H 0.065 0.935
36 H 0.059 0.941
37 H 0.084 0.916
38 H 0.080 0.920
39 H 0.076 0.924
40 H 0.078 0.922
41 H 0.082 0.918
42 H 0.058 0.942
43 H 0.082 0.918
44 H 0.062 0.938
45 H 0.054 0.946
46 H 0.053 0.947
47 H 0.056 0.944
48 H 0.054 0.946
49 H 0.075 0.925
50 H 0.062 0.938
51 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.377 -4.297 -17.010 17.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.013 3.987
3 H 0.099 0.901
4 O -0.270 6.270
5 C -0.012 4.012
6 C 0.023 3.977
7 H 0.098 0.902
8 C -0.186 4.186
9 C -0.193 4.193
10 C -0.033 4.033
11 O -0.283 6.283
12 C 0.297 3.703
13 O -0.421 6.421
14 N -0.324 5.324
15 C -0.026 4.026
16 C 0.061 3.939
17 H 0.138 0.862
18 C -0.178 4.178
19 C -0.163 4.163
20 C 0.026 3.974
21 H 0.096 0.904
22 C -0.021 4.021
23 N -0.305 5.305
24 C -0.350 4.350
25 H 0.094 0.906
26 C -0.201 4.201
27 N -0.563 5.563
28 Si 0.743 3.257
29 H -0.217 1.217
30 H -0.216 1.216
31 H -0.206 1.206
32 H 0.089 0.911
33 H 0.100 0.900
34 H 0.084 0.916
35 H 0.083 0.917
36 H 0.078 0.922
37 H 0.103 0.897
38 H 0.099 0.901
39 H 0.094 0.906
40 H 0.096 0.904
41 H 0.100 0.900
42 H 0.076 0.924
43 H 0.101 0.899
44 H 0.080 0.920
45 H 0.073 0.927
46 H 0.072 0.928
47 H 0.075 0.925
48 H 0.073 0.927
49 H 0.093 0.907
50 H 0.080 0.920
51 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -0.273 -4.899 -16.825 17.526
hybrid contribution 0.443 1.096 0.450 1.265
sum 0.170 -3.803 -16.375 16.812
Atomic orbital electron populations
1.22355 0.93667 1.03808 1.03260 1.21899 0.95307 0.96020 0.85476
0.90113 1.88075 1.86562 1.33684 1.18645 1.22596 1.00350 0.92479
0.85759 1.23157 0.91209 0.90941 0.92422 0.90214 1.23105 1.03064
0.98614 0.93827 1.22929 1.00914 0.96755 0.98670 1.23141 0.99061
0.97149 0.83989 1.89038 1.44650 1.68420 1.26197 1.20187 0.79121
0.86762 0.84181 1.90637 1.48423 1.17551 1.85505 1.48152 1.57867
1.18492 1.07893 1.22817 0.98676 0.81653 0.99480 1.21944 0.89178
0.97305 0.85476 0.86214 1.22718 0.98989 0.97232 0.98879 1.22460
0.97187 0.97380 0.99234 1.21996 0.93010 0.87691 0.94751 0.90379
1.22364 0.96854 0.97412 0.85465 1.45166 1.56303 1.02589 1.26467
1.19034 1.35085 0.87182 0.93715 0.90554 1.24807 1.01682 0.96635
0.96965 1.69805 1.54034 1.10506 1.21994 0.86105 0.77680 0.80220
0.81743 1.21667 1.21647 1.20639 0.91142 0.89951 0.91580 0.91725
0.92244 0.89749 0.90113 0.90561 0.90362 0.89959 0.92394 0.89936
0.91973 0.92712 0.92839 0.92539 0.92743 0.90656 0.91982 0.93581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.40 9.13 37.16 0.34 -2.06 16
2 C 0.07 1.17 2.28 -27.88 -0.06 1.11 16
3 H 0.08 1.15 6.91 -51.93 -0.36 0.79 16
4 O -0.35 -5.79 9.59 -55.37 -0.53 -6.33 16
5 C 0.07 0.79 5.50 37.15 0.20 1.00 16
6 C 0.08 0.90 3.62 -25.68 -0.09 0.81 16
7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
8 C -0.15 -1.15 6.59 -24.72 -0.16 -1.31 16
9 C -0.15 -1.06 7.01 -25.20 -0.18 -1.24 16
10 C 0.04 0.39 7.69 37.74 0.29 0.68 16
11 O -0.36 -4.75 11.25 -35.23 -0.40 -5.15 16
12 C 0.51 9.84 6.97 -10.98 -0.08 9.76 16
13 O -0.54 -12.24 16.06 -13.62 -0.22 -12.46 16
14 N -0.59 -11.33 2.24 -171.22 -0.38 -11.72 16
15 C 0.10 1.89 5.28 -2.99 -0.02 1.87 16
16 C 0.17 3.57 3.13 -65.44 -0.20 3.37 16
17 H 0.12 2.86 6.35 -51.93 -0.33 2.53 16
18 C -0.14 -2.55 6.18 -25.25 -0.16 -2.71 16
19 C -0.12 -2.25 6.18 -25.25 -0.16 -2.41 16
20 C 0.13 2.68 4.32 -65.64 -0.28 2.39 16
21 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16
22 C 0.10 2.04 5.92 -3.18 -0.02 2.02 16
23 N -0.58 -13.54 2.81 -152.34 -0.43 -13.97 16
24 C -0.22 -5.69 10.37 -15.06 -0.16 -5.84 16
25 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16
26 C 0.00 -0.11 5.42 -17.43 -0.09 -0.20 16
27 N -0.92 -23.97 10.41 55.49 0.58 -23.39 16
28 Si 0.91 20.77 29.56 -169.99 -5.03 15.75 16
29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
30 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
31 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16
32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.08 1.13 4.20 -51.93 -0.22 0.91 16
34 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16
35 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16
36 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16
37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16
39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
43 H 0.08 1.84 7.85 -51.93 -0.41 1.44 16
44 H 0.06 1.04 4.46 -51.93 -0.23 0.80 16
45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
46 H 0.05 0.90 5.75 -51.93 -0.30 0.60 16
47 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16
48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
49 H 0.08 1.46 7.08 -51.93 -0.37 1.09 16
50 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
51 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16
LS Contribution 386.96 15.07 5.83 5.83
Total: -1.00 -30.75 386.96 -9.87 -40.62
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: -8.48 Total: 3.57 kcal
Atomic # 6 Polarization: 8.06 SS G_CDS: -0.82 Total: 7.24 kcal
Atomic # 7 Polarization: -48.84 SS G_CDS: -0.23 Total: -49.07 kcal
Atomic # 8 Polarization: -22.79 SS G_CDS: -1.15 Total: -23.93 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -30.75 -9.87 -40.62 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481391317.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.159 kcal
(2) G-P(sol) polarization free energy of solvation -30.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds