Wall clock time and date at job start Tue Mar 31 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47279 * 2 1 4 4 O 1.42899 * 109.47464 * 239.99514 * 2 1 3 5 5 C 1.42905 * 113.99816 * 90.00077 * 4 2 1 6 6 C 1.52993 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.55438 * 307.88102 * 6 5 4 8 8 C 1.54998 * 110.61923 * 184.99730 * 6 5 4 9 9 C 1.54810 * 102.09631 * 204.31717 * 8 6 5 10 10 C 1.54109 * 104.18489 * 20.87983 * 9 8 6 11 11 O 1.43745 * 107.41885 * 1.95591 * 10 9 8 12 12 C 1.50705 * 109.47063 * 119.99678 * 2 1 3 13 13 O 1.21273 * 120.00120 * 101.34246 * 12 2 1 14 14 N 1.34777 * 119.99687 * 281.34267 * 12 2 1 15 15 C 1.47166 * 120.71307 * 4.95378 * 14 12 2 16 16 C 1.54312 * 107.80701 * 132.67719 * 15 14 12 17 17 H 1.08995 * 112.53232 * 182.37297 * 16 15 14 18 18 C 1.54547 * 107.98528 * 306.73741 * 16 15 14 19 19 C 1.54278 * 104.84555 * 89.01677 * 18 16 15 20 20 C 1.54543 * 104.85399 * 0.02562 * 19 18 16 21 21 H 1.08999 * 112.68353 * 146.68492 * 20 19 18 22 22 C 1.47166 * 120.70837 * 185.22168 * 14 12 2 23 23 N 1.48306 * 107.10251 * 58.61820 * 16 15 14 24 24 C 1.36937 * 128.07899 * 106.57615 * 23 16 15 25 25 H 1.08001 * 120.00202 * 164.79338 * 24 23 16 26 26 C 1.38814 * 119.99671 * 344.78555 * 24 23 16 27 27 N 1.31613 * 120.00413 * 351.36169 * 26 24 23 28 28 Si 1.86808 * 119.99796 * 171.36181 * 26 24 23 29 29 H 1.48502 * 109.46913 * 94.97598 * 28 26 24 30 30 H 1.48495 * 109.47205 * 214.97382 * 28 26 24 31 31 H 1.48496 * 109.47016 * 334.97407 * 28 26 24 32 32 H 1.08996 * 109.47112 * 178.73796 * 1 2 3 33 33 H 1.09003 * 109.47104 * 298.74232 * 1 2 3 34 34 H 1.09000 * 109.46865 * 58.73964 * 1 2 3 35 35 H 1.09001 * 109.47032 * 60.00339 * 5 4 2 36 36 H 1.09005 * 109.46707 * 300.00112 * 5 4 2 37 37 H 1.09000 * 110.90348 * 86.12223 * 8 6 5 38 38 H 1.08992 * 110.90839 * 322.51869 * 8 6 5 39 39 H 1.09006 * 110.48669 * 262.20725 * 9 8 6 40 40 H 1.08999 * 110.48882 * 139.55855 * 9 8 6 41 41 H 1.08998 * 109.87234 * 121.45594 * 10 9 8 42 42 H 1.08999 * 109.87458 * 242.45325 * 10 9 8 43 43 H 1.09005 * 109.74358 * 252.38377 * 15 14 12 44 44 H 1.09001 * 109.74678 * 13.10929 * 15 14 12 45 45 H 1.09004 * 110.36041 * 207.85813 * 18 16 15 46 46 H 1.08997 * 110.36433 * 330.06796 * 18 16 15 47 47 H 1.09000 * 110.36483 * 241.15503 * 19 18 16 48 48 H 1.08997 * 110.36524 * 118.84427 * 19 18 16 49 49 H 1.08996 * 109.75047 * 346.88293 * 22 14 12 50 50 H 1.08999 * 109.74778 * 107.61292 * 22 14 12 51 51 H 0.97003 * 120.00516 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2941 6 6 2.7081 -0.6410 -3.4790 7 1 3.5781 -1.2307 -3.1903 8 6 3.0467 0.2800 -4.6789 9 6 2.9093 -0.6877 -5.8794 10 6 2.0229 -1.8293 -5.3448 11 8 1.6634 -1.4980 -3.9931 12 6 2.0324 -0.7104 1.2305 13 8 2.4292 -1.8536 1.1512 14 7 2.0405 -0.0751 2.4192 15 6 1.4633 1.2718 2.5556 16 6 0.5581 1.2730 3.8053 17 1 0.0559 2.2284 3.9563 18 6 -0.4422 0.1026 3.6710 19 6 0.2736 -1.1047 4.3113 20 6 1.6413 -0.5542 4.7749 21 1 2.0008 -1.0340 5.6852 22 6 2.6321 -0.7111 3.6072 23 7 1.4093 0.8986 4.9607 24 6 1.8726 1.7058 5.9651 25 1 2.2732 1.2688 6.8678 26 6 1.8274 3.0859 5.8228 27 7 1.5007 3.6178 4.6641 28 14 2.2303 4.1883 7.2761 29 1 3.6605 4.5836 7.2159 30 1 1.3784 5.4036 7.2268 31 1 1.9725 3.4541 8.5408 32 1 -0.3633 -1.0274 -0.0226 33 1 -0.3633 0.4942 0.9011 34 1 -0.3633 0.5333 -0.8785 35 1 2.9321 0.9512 -2.0450 36 1 1.2538 0.6545 -2.5588 37 1 4.0648 0.6613 -4.6012 38 1 2.3310 1.0985 -4.7551 39 1 3.8864 -1.0698 -6.1752 40 1 2.4240 -0.1886 -6.7182 41 1 1.1249 -1.9185 -5.9561 42 1 2.5772 -2.7677 -5.3616 43 1 2.2618 2.0043 2.6745 44 1 0.8724 1.5105 1.6713 45 1 -1.3630 0.3270 4.2096 46 1 -0.6564 -0.0947 2.6207 47 1 0.4129 -1.8970 3.5758 48 1 -0.2951 -1.4741 5.1647 49 1 2.8054 -1.7691 3.4107 50 1 3.5744 -0.2228 3.8556 51 1 1.4695 4.5822 4.5646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481391317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:15 Heat of formation + Delta-G solvation = -84.781064 kcal Electronic energy + Delta-G solvation = -31339.687009 eV Core-core repulsion = 27240.359847 eV Total energy + Delta-G solvation = -4099.327163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.24370 -39.63063 -38.25971 -36.94121 -33.79611 -32.61777 -32.41032 -31.88524 -30.64539 -29.78148 -29.26741 -26.36138 -25.72855 -24.42328 -23.72637 -22.87488 -21.87988 -21.47709 -19.82531 -19.69143 -18.60177 -17.42597 -17.12901 -16.46379 -16.14390 -15.75982 -15.68512 -15.21634 -15.17625 -14.76049 -14.55847 -13.93910 -13.77827 -13.63462 -13.47419 -13.04443 -12.95958 -12.86951 -12.43701 -12.19962 -12.13278 -12.02152 -11.77574 -11.66487 -11.64196 -11.53386 -11.41128 -11.16731 -10.98338 -10.93364 -10.85292 -10.78040 -10.35872 -10.07002 -9.86124 -9.83166 -9.77274 -9.60053 -9.55509 -9.10130 -8.76056 -8.04521 -6.86758 -5.89212 -3.23236 3.02662 3.18646 3.32621 3.39719 3.40620 3.62043 3.94397 4.25351 4.38886 4.55232 4.63450 4.82847 4.91297 4.97250 5.04103 5.09479 5.18691 5.24621 5.26161 5.29909 5.32569 5.40800 5.48181 5.57842 5.63247 5.67490 5.70507 5.73955 5.78272 5.81246 5.84081 5.90982 5.96307 6.12782 6.19257 6.35419 6.42004 6.55894 6.61192 6.64643 6.70260 6.74001 6.88772 6.91950 7.15791 7.26422 7.44980 7.62685 8.06472 8.11490 8.72808 9.02052 9.63918 10.40941 11.24285 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.993827 B =10451.016545 C =11097.054655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.074 3.926 3 H 0.081 0.919 4 O -0.352 6.352 5 C 0.065 3.935 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.148 4.148 9 C -0.155 4.155 10 C 0.044 3.956 11 O -0.364 6.364 12 C 0.511 3.489 13 O -0.543 6.543 14 N -0.591 5.591 15 C 0.097 3.903 16 C 0.169 3.831 17 H 0.120 0.880 18 C -0.139 4.139 19 C -0.123 4.123 20 C 0.134 3.866 21 H 0.078 0.922 22 C 0.103 3.897 23 N -0.584 5.584 24 C -0.222 4.222 25 H 0.077 0.923 26 C -0.004 4.004 27 N -0.917 5.917 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.281 1.281 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -4.297 -17.010 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.099 0.901 4 O -0.270 6.270 5 C -0.012 4.012 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.033 4.033 11 O -0.283 6.283 12 C 0.297 3.703 13 O -0.421 6.421 14 N -0.324 5.324 15 C -0.026 4.026 16 C 0.061 3.939 17 H 0.138 0.862 18 C -0.178 4.178 19 C -0.163 4.163 20 C 0.026 3.974 21 H 0.096 0.904 22 C -0.021 4.021 23 N -0.305 5.305 24 C -0.350 4.350 25 H 0.094 0.906 26 C -0.201 4.201 27 N -0.563 5.563 28 Si 0.743 3.257 29 H -0.217 1.217 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.273 -4.899 -16.825 17.526 hybrid contribution 0.443 1.096 0.450 1.265 sum 0.170 -3.803 -16.375 16.812 Atomic orbital electron populations 1.22355 0.93667 1.03808 1.03260 1.21899 0.95307 0.96020 0.85476 0.90113 1.88075 1.86562 1.33684 1.18645 1.22596 1.00350 0.92479 0.85759 1.23157 0.91209 0.90941 0.92422 0.90214 1.23105 1.03064 0.98614 0.93827 1.22929 1.00914 0.96755 0.98670 1.23141 0.99061 0.97149 0.83989 1.89038 1.44650 1.68420 1.26197 1.20187 0.79121 0.86762 0.84181 1.90637 1.48423 1.17551 1.85505 1.48152 1.57867 1.18492 1.07893 1.22817 0.98676 0.81653 0.99480 1.21944 0.89178 0.97305 0.85476 0.86214 1.22718 0.98989 0.97232 0.98879 1.22460 0.97187 0.97380 0.99234 1.21996 0.93010 0.87691 0.94751 0.90379 1.22364 0.96854 0.97412 0.85465 1.45166 1.56303 1.02589 1.26467 1.19034 1.35085 0.87182 0.93715 0.90554 1.24807 1.01682 0.96635 0.96965 1.69805 1.54034 1.10506 1.21994 0.86105 0.77680 0.80220 0.81743 1.21667 1.21647 1.20639 0.91142 0.89951 0.91580 0.91725 0.92244 0.89749 0.90113 0.90561 0.90362 0.89959 0.92394 0.89936 0.91973 0.92712 0.92839 0.92539 0.92743 0.90656 0.91982 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.13 37.16 0.34 -2.06 16 2 C 0.07 1.17 2.28 -27.88 -0.06 1.11 16 3 H 0.08 1.15 6.91 -51.93 -0.36 0.79 16 4 O -0.35 -5.79 9.59 -55.37 -0.53 -6.33 16 5 C 0.07 0.79 5.50 37.15 0.20 1.00 16 6 C 0.08 0.90 3.62 -25.68 -0.09 0.81 16 7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.15 -1.15 6.59 -24.72 -0.16 -1.31 16 9 C -0.15 -1.06 7.01 -25.20 -0.18 -1.24 16 10 C 0.04 0.39 7.69 37.74 0.29 0.68 16 11 O -0.36 -4.75 11.25 -35.23 -0.40 -5.15 16 12 C 0.51 9.84 6.97 -10.98 -0.08 9.76 16 13 O -0.54 -12.24 16.06 -13.62 -0.22 -12.46 16 14 N -0.59 -11.33 2.24 -171.22 -0.38 -11.72 16 15 C 0.10 1.89 5.28 -2.99 -0.02 1.87 16 16 C 0.17 3.57 3.13 -65.44 -0.20 3.37 16 17 H 0.12 2.86 6.35 -51.93 -0.33 2.53 16 18 C -0.14 -2.55 6.18 -25.25 -0.16 -2.71 16 19 C -0.12 -2.25 6.18 -25.25 -0.16 -2.41 16 20 C 0.13 2.68 4.32 -65.64 -0.28 2.39 16 21 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 22 C 0.10 2.04 5.92 -3.18 -0.02 2.02 16 23 N -0.58 -13.54 2.81 -152.34 -0.43 -13.97 16 24 C -0.22 -5.69 10.37 -15.06 -0.16 -5.84 16 25 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 26 C 0.00 -0.11 5.42 -17.43 -0.09 -0.20 16 27 N -0.92 -23.97 10.41 55.49 0.58 -23.39 16 28 Si 0.91 20.77 29.56 -169.99 -5.03 15.75 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.13 4.20 -51.93 -0.22 0.91 16 34 H 0.07 0.77 7.90 -51.93 -0.41 0.36 16 35 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.84 7.85 -51.93 -0.41 1.44 16 44 H 0.06 1.04 4.46 -51.93 -0.23 0.80 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.05 0.90 5.75 -51.93 -0.30 0.60 16 47 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 1.46 7.08 -51.93 -0.37 1.09 16 50 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -30.75 386.96 -9.87 -40.62 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.48 Total: 3.57 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.82 Total: 7.24 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.23 Total: -49.07 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -1.15 Total: -23.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.75 -9.87 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481391317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.159 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds