Wall clock time and date at job start Tue Mar 31 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47279 * 2 1 4 4 O 1.42899 * 109.47464 * 239.99514 * 2 1 3 5 5 C 1.42905 * 113.99816 * 90.00077 * 4 2 1 6 6 C 1.52993 * 109.46893 * 180.02562 * 5 4 2 7 7 H 1.09005 * 110.55438 * 307.88102 * 6 5 4 8 8 C 1.54998 * 110.61923 * 184.99730 * 6 5 4 9 9 C 1.54810 * 102.09631 * 204.31717 * 8 6 5 10 10 C 1.54109 * 104.18489 * 20.87983 * 9 8 6 11 11 O 1.43745 * 107.41885 * 1.95591 * 10 9 8 12 12 C 1.50705 * 109.47063 * 119.99678 * 2 1 3 13 13 O 1.21273 * 120.00120 * 101.34246 * 12 2 1 14 14 N 1.34777 * 119.99687 * 281.34267 * 12 2 1 15 15 C 1.47166 * 120.71307 * 4.95378 * 14 12 2 16 16 C 1.54312 * 107.80701 * 132.67719 * 15 14 12 17 17 H 1.08995 * 112.53232 * 182.37297 * 16 15 14 18 18 C 1.54547 * 107.98528 * 306.73741 * 16 15 14 19 19 C 1.54278 * 104.84555 * 89.01677 * 18 16 15 20 20 C 1.54543 * 104.85399 * 0.02562 * 19 18 16 21 21 H 1.08999 * 112.68353 * 146.68492 * 20 19 18 22 22 C 1.47166 * 120.70837 * 185.22168 * 14 12 2 23 23 N 1.48306 * 107.10251 * 58.61820 * 16 15 14 24 24 C 1.36937 * 128.07899 * 106.57615 * 23 16 15 25 25 H 1.08001 * 120.00202 * 164.79338 * 24 23 16 26 26 C 1.38814 * 119.99671 * 344.78555 * 24 23 16 27 27 N 1.31613 * 120.00413 * 351.36169 * 26 24 23 28 28 Si 1.86808 * 119.99796 * 171.36181 * 26 24 23 29 29 H 1.48502 * 109.46913 * 94.97598 * 28 26 24 30 30 H 1.48495 * 109.47205 * 214.97382 * 28 26 24 31 31 H 1.48496 * 109.47016 * 334.97407 * 28 26 24 32 32 H 1.08996 * 109.47112 * 178.73796 * 1 2 3 33 33 H 1.09003 * 109.47104 * 298.74232 * 1 2 3 34 34 H 1.09000 * 109.46865 * 58.73964 * 1 2 3 35 35 H 1.09001 * 109.47032 * 60.00339 * 5 4 2 36 36 H 1.09005 * 109.46707 * 300.00112 * 5 4 2 37 37 H 1.09000 * 110.90348 * 86.12223 * 8 6 5 38 38 H 1.08992 * 110.90839 * 322.51869 * 8 6 5 39 39 H 1.09006 * 110.48669 * 262.20725 * 9 8 6 40 40 H 1.08999 * 110.48882 * 139.55855 * 9 8 6 41 41 H 1.08998 * 109.87234 * 121.45594 * 10 9 8 42 42 H 1.08999 * 109.87458 * 242.45325 * 10 9 8 43 43 H 1.09005 * 109.74358 * 252.38377 * 15 14 12 44 44 H 1.09001 * 109.74678 * 13.10929 * 15 14 12 45 45 H 1.09004 * 110.36041 * 207.85813 * 18 16 15 46 46 H 1.08997 * 110.36433 * 330.06796 * 18 16 15 47 47 H 1.09000 * 110.36483 * 241.15503 * 19 18 16 48 48 H 1.08997 * 110.36524 * 118.84427 * 19 18 16 49 49 H 1.08996 * 109.75047 * 346.88293 * 22 14 12 50 50 H 1.08999 * 109.74778 * 107.61292 * 22 14 12 51 51 H 0.97003 * 120.00516 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2941 6 6 2.7081 -0.6410 -3.4790 7 1 3.5781 -1.2307 -3.1903 8 6 3.0467 0.2800 -4.6789 9 6 2.9093 -0.6877 -5.8794 10 6 2.0229 -1.8293 -5.3448 11 8 1.6634 -1.4980 -3.9931 12 6 2.0324 -0.7104 1.2305 13 8 2.4292 -1.8536 1.1512 14 7 2.0405 -0.0751 2.4192 15 6 1.4633 1.2718 2.5556 16 6 0.5581 1.2730 3.8053 17 1 0.0559 2.2284 3.9563 18 6 -0.4422 0.1026 3.6710 19 6 0.2736 -1.1047 4.3113 20 6 1.6413 -0.5542 4.7749 21 1 2.0008 -1.0340 5.6852 22 6 2.6321 -0.7111 3.6072 23 7 1.4093 0.8986 4.9607 24 6 1.8726 1.7058 5.9651 25 1 2.2732 1.2688 6.8678 26 6 1.8274 3.0859 5.8228 27 7 1.5007 3.6178 4.6641 28 14 2.2303 4.1883 7.2761 29 1 3.6605 4.5836 7.2159 30 1 1.3784 5.4036 7.2268 31 1 1.9725 3.4541 8.5408 32 1 -0.3633 -1.0274 -0.0226 33 1 -0.3633 0.4942 0.9011 34 1 -0.3633 0.5333 -0.8785 35 1 2.9321 0.9512 -2.0450 36 1 1.2538 0.6545 -2.5588 37 1 4.0648 0.6613 -4.6012 38 1 2.3310 1.0985 -4.7551 39 1 3.8864 -1.0698 -6.1752 40 1 2.4240 -0.1886 -6.7182 41 1 1.1249 -1.9185 -5.9561 42 1 2.5772 -2.7677 -5.3616 43 1 2.2618 2.0043 2.6745 44 1 0.8724 1.5105 1.6713 45 1 -1.3630 0.3270 4.2096 46 1 -0.6564 -0.0947 2.6207 47 1 0.4129 -1.8970 3.5758 48 1 -0.2951 -1.4741 5.1647 49 1 2.8054 -1.7691 3.4107 50 1 3.5744 -0.2228 3.8556 51 1 1.4695 4.5822 4.5646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481391317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:14 Heat of formation + Delta-G solvation = -102.115127 kcal Electronic energy + Delta-G solvation = -31340.438671 eV Core-core repulsion = 27240.359847 eV Total energy + Delta-G solvation = -4100.078824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76375 -40.48362 -39.65954 -38.29134 -35.47116 -34.33074 -33.32447 -32.98465 -31.93546 -31.03519 -30.89488 -27.95062 -26.63471 -25.94343 -25.39444 -24.26950 -22.62626 -22.21145 -21.36890 -21.25832 -20.26884 -18.78819 -18.33801 -17.68740 -17.38586 -17.00472 -16.76917 -16.65211 -16.45842 -16.21764 -15.80443 -15.53289 -14.99941 -14.88134 -14.67654 -14.52086 -14.43288 -14.07484 -13.67988 -13.56610 -13.42331 -13.23900 -13.13329 -13.01574 -12.77082 -12.66755 -12.63664 -12.54964 -12.46301 -12.20886 -12.06083 -11.94832 -11.80249 -11.55090 -11.47329 -11.40194 -11.14819 -10.98216 -10.70097 -10.63983 -10.40744 -9.73007 -8.68529 -7.83578 -5.17793 1.50163 1.52861 1.56348 1.60167 1.81546 2.52199 2.73977 2.88852 3.35918 3.43380 3.53883 3.63376 3.83462 3.91524 3.99004 4.01538 4.10460 4.12595 4.13970 4.22343 4.26482 4.33324 4.38178 4.40713 4.48924 4.53452 4.53970 4.58498 4.71139 4.80255 4.80924 4.83086 4.90302 4.93237 4.97337 5.04667 5.05536 5.06438 5.09890 5.20798 5.27662 5.32739 5.37734 5.56447 5.62558 5.82898 5.94135 6.09909 6.25590 6.54631 7.10837 7.18843 7.73928 8.53635 9.28086 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020110 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.993827 B =10451.016545 C =11097.054655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.078 3.922 3 H 0.099 0.901 4 O -0.381 6.381 5 C 0.058 3.942 6 C 0.073 3.927 7 H 0.064 0.936 8 C -0.141 4.141 9 C -0.149 4.149 10 C 0.033 3.967 11 O -0.399 6.399 12 C 0.509 3.491 13 O -0.579 6.579 14 N -0.588 5.588 15 C 0.112 3.888 16 C 0.165 3.835 17 H 0.093 0.907 18 C -0.131 4.131 19 C -0.114 4.114 20 C 0.131 3.869 21 H 0.083 0.917 22 C 0.108 3.892 23 N -0.603 5.603 24 C -0.235 4.235 25 H 0.073 0.927 26 C -0.048 4.048 27 N -0.931 5.931 28 Si 0.968 3.032 29 H -0.293 1.293 30 H -0.294 1.294 31 H -0.277 1.277 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.045 0.955 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 -3.823 -18.540 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.117 0.883 4 O -0.300 6.300 5 C -0.018 4.018 6 C 0.015 3.985 7 H 0.082 0.918 8 C -0.178 4.178 9 C -0.186 4.186 10 C -0.043 4.043 11 O -0.319 6.319 12 C 0.297 3.703 13 O -0.460 6.460 14 N -0.321 5.321 15 C -0.012 4.012 16 C 0.058 3.942 17 H 0.111 0.889 18 C -0.169 4.169 19 C -0.153 4.153 20 C 0.023 3.977 21 H 0.101 0.899 22 C -0.017 4.017 23 N -0.324 5.324 24 C -0.363 4.363 25 H 0.091 0.909 26 C -0.243 4.243 27 N -0.578 5.578 28 Si 0.798 3.202 29 H -0.221 1.221 30 H -0.220 1.220 31 H -0.202 1.202 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.064 0.936 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.912 -4.434 -18.369 18.919 hybrid contribution 0.681 0.883 0.895 1.430 sum -0.231 -3.551 -17.474 17.833 Atomic orbital electron populations 1.22313 0.91931 1.03530 1.04586 1.21903 0.96467 0.95992 0.83964 0.88326 1.88048 1.86835 1.35526 1.19600 1.22887 1.01635 0.92613 0.84671 1.23266 0.90311 0.91415 0.93474 0.91785 1.23107 1.04186 0.98273 0.92254 1.22937 1.01225 0.95764 0.98706 1.23362 1.00164 0.98069 0.82706 1.88993 1.45583 1.69066 1.28221 1.20871 0.78113 0.86396 0.84915 1.90615 1.50020 1.19281 1.86047 1.48154 1.57662 1.18292 1.08004 1.22570 0.97593 0.80878 1.00134 1.21904 0.89749 0.97125 0.85472 0.88904 1.22645 0.98279 0.95827 1.00197 1.22370 0.96036 0.97208 0.99700 1.22133 0.94145 0.86314 0.95101 0.89888 1.22226 0.96216 0.97360 0.85920 1.45335 1.56789 1.03672 1.26632 1.19248 1.34880 0.87835 0.94373 0.90909 1.25413 1.02322 0.97631 0.98930 1.69942 1.54728 1.10196 1.22971 0.85231 0.76861 0.78477 0.79627 1.22073 1.22009 1.20203 0.92295 0.89750 0.88929 0.89966 0.90944 0.88206 0.89191 0.89437 0.88579 0.88863 0.92506 0.93096 0.88909 0.92179 0.90999 0.92262 0.91546 0.90387 0.93632 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 9.13 71.98 0.66 -3.54 16 2 C 0.08 2.33 2.28 29.85 0.07 2.40 16 3 H 0.10 2.58 6.91 -2.39 -0.02 2.56 16 4 O -0.38 -12.20 9.59 -129.72 -1.24 -13.44 16 5 C 0.06 1.31 5.50 71.98 0.40 1.71 16 6 C 0.07 1.56 3.62 31.28 0.11 1.67 16 7 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 8 C -0.14 -1.84 6.59 31.90 0.21 -1.63 16 9 C -0.15 -1.67 7.01 31.59 0.22 -1.45 16 10 C 0.03 0.56 7.69 72.36 0.56 1.12 16 11 O -0.40 -10.14 11.25 -148.98 -1.68 -11.81 16 12 C 0.51 19.25 6.97 87.66 0.61 19.86 16 13 O -0.58 -26.12 16.06 15.33 0.25 -25.88 16 14 N -0.59 -22.31 2.24 -814.02 -1.83 -24.13 16 15 C 0.11 4.27 5.28 86.70 0.46 4.73 16 16 C 0.16 6.91 3.13 45.61 0.14 7.05 16 17 H 0.09 4.45 6.35 -2.39 -0.02 4.44 16 18 C -0.13 -4.58 6.18 31.55 0.20 -4.38 16 19 C -0.11 -4.00 6.18 31.55 0.20 -3.80 16 20 C 0.13 5.18 4.32 45.49 0.20 5.37 16 21 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 22 C 0.11 4.25 5.92 86.57 0.51 4.77 16 23 N -0.60 -27.97 2.81 -635.87 -1.78 -29.76 16 24 C -0.23 -12.09 10.37 84.03 0.87 -11.22 16 25 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16 26 C -0.05 -2.50 5.42 84.86 0.46 -2.03 16 27 N -0.93 -49.11 10.41 21.65 0.23 -48.88 16 28 Si 0.97 42.95 29.56 68.60 2.03 44.98 16 29 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 30 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 31 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.07 4.20 -2.39 -0.01 2.06 16 34 H 0.09 1.86 7.90 -2.39 -0.02 1.84 16 35 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.07 1.43 7.90 -2.38 -0.02 1.41 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.02 8.06 -2.39 -0.02 1.00 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 2.29 7.85 -2.38 -0.02 2.27 16 44 H 0.09 2.93 4.46 -2.39 -0.01 2.92 16 45 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.07 2.25 5.75 -2.39 -0.01 2.23 16 47 H 0.06 2.05 7.84 -2.39 -0.02 2.04 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.08 3.04 7.08 -2.39 -0.02 3.03 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -66.94 386.96 2.75 -64.19 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.92 Total: 24.12 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.87 Total: 20.61 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.38 Total: -102.77 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -2.67 Total: -51.13 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.94 2.75 -64.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481391317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.927 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds