Wall clock time and date at job start Tue Mar 31 2020 21:45:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47279 * 2 1
4 4 O 1.42899 * 109.47464 * 239.99514 * 2 1 3
5 5 C 1.42905 * 113.99816 * 90.00077 * 4 2 1
6 6 C 1.52993 * 109.46893 * 180.02562 * 5 4 2
7 7 H 1.09005 * 110.55438 * 307.88102 * 6 5 4
8 8 C 1.54998 * 110.61923 * 184.99730 * 6 5 4
9 9 C 1.54810 * 102.09631 * 204.31717 * 8 6 5
10 10 C 1.54109 * 104.18489 * 20.87983 * 9 8 6
11 11 O 1.43745 * 107.41885 * 1.95591 * 10 9 8
12 12 C 1.50705 * 109.47063 * 119.99678 * 2 1 3
13 13 O 1.21273 * 120.00120 * 101.34246 * 12 2 1
14 14 N 1.34777 * 119.99687 * 281.34267 * 12 2 1
15 15 C 1.47166 * 120.71307 * 4.95378 * 14 12 2
16 16 C 1.54312 * 107.80701 * 132.67719 * 15 14 12
17 17 H 1.08995 * 112.53232 * 182.37297 * 16 15 14
18 18 C 1.54547 * 107.98528 * 306.73741 * 16 15 14
19 19 C 1.54278 * 104.84555 * 89.01677 * 18 16 15
20 20 C 1.54543 * 104.85399 * 0.02562 * 19 18 16
21 21 H 1.08999 * 112.68353 * 146.68492 * 20 19 18
22 22 C 1.47166 * 120.70837 * 185.22168 * 14 12 2
23 23 N 1.48306 * 107.10251 * 58.61820 * 16 15 14
24 24 C 1.36937 * 128.07899 * 106.57615 * 23 16 15
25 25 H 1.08001 * 120.00202 * 164.79338 * 24 23 16
26 26 C 1.38814 * 119.99671 * 344.78555 * 24 23 16
27 27 N 1.31613 * 120.00413 * 351.36169 * 26 24 23
28 28 Si 1.86808 * 119.99796 * 171.36181 * 26 24 23
29 29 H 1.48502 * 109.46913 * 94.97598 * 28 26 24
30 30 H 1.48495 * 109.47205 * 214.97382 * 28 26 24
31 31 H 1.48496 * 109.47016 * 334.97407 * 28 26 24
32 32 H 1.08996 * 109.47112 * 178.73796 * 1 2 3
33 33 H 1.09003 * 109.47104 * 298.74232 * 1 2 3
34 34 H 1.09000 * 109.46865 * 58.73964 * 1 2 3
35 35 H 1.09001 * 109.47032 * 60.00339 * 5 4 2
36 36 H 1.09005 * 109.46707 * 300.00112 * 5 4 2
37 37 H 1.09000 * 110.90348 * 86.12223 * 8 6 5
38 38 H 1.08992 * 110.90839 * 322.51869 * 8 6 5
39 39 H 1.09006 * 110.48669 * 262.20725 * 9 8 6
40 40 H 1.08999 * 110.48882 * 139.55855 * 9 8 6
41 41 H 1.08998 * 109.87234 * 121.45594 * 10 9 8
42 42 H 1.08999 * 109.87458 * 242.45325 * 10 9 8
43 43 H 1.09005 * 109.74358 * 252.38377 * 15 14 12
44 44 H 1.09001 * 109.74678 * 13.10929 * 15 14 12
45 45 H 1.09004 * 110.36041 * 207.85813 * 18 16 15
46 46 H 1.08997 * 110.36433 * 330.06796 * 18 16 15
47 47 H 1.09000 * 110.36483 * 241.15503 * 19 18 16
48 48 H 1.08997 * 110.36524 * 118.84427 * 19 18 16
49 49 H 1.08996 * 109.75047 * 346.88293 * 22 14 12
50 50 H 1.08999 * 109.74778 * 107.61292 * 22 14 12
51 51 H 0.97003 * 120.00516 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.2002 0.1828 -2.2941
6 6 2.7081 -0.6410 -3.4790
7 1 3.5781 -1.2307 -3.1903
8 6 3.0467 0.2800 -4.6789
9 6 2.9093 -0.6877 -5.8794
10 6 2.0229 -1.8293 -5.3448
11 8 1.6634 -1.4980 -3.9931
12 6 2.0324 -0.7104 1.2305
13 8 2.4292 -1.8536 1.1512
14 7 2.0405 -0.0751 2.4192
15 6 1.4633 1.2718 2.5556
16 6 0.5581 1.2730 3.8053
17 1 0.0559 2.2284 3.9563
18 6 -0.4422 0.1026 3.6710
19 6 0.2736 -1.1047 4.3113
20 6 1.6413 -0.5542 4.7749
21 1 2.0008 -1.0340 5.6852
22 6 2.6321 -0.7111 3.6072
23 7 1.4093 0.8986 4.9607
24 6 1.8726 1.7058 5.9651
25 1 2.2732 1.2688 6.8678
26 6 1.8274 3.0859 5.8228
27 7 1.5007 3.6178 4.6641
28 14 2.2303 4.1883 7.2761
29 1 3.6605 4.5836 7.2159
30 1 1.3784 5.4036 7.2268
31 1 1.9725 3.4541 8.5408
32 1 -0.3633 -1.0274 -0.0226
33 1 -0.3633 0.4942 0.9011
34 1 -0.3633 0.5333 -0.8785
35 1 2.9321 0.9512 -2.0450
36 1 1.2538 0.6545 -2.5588
37 1 4.0648 0.6613 -4.6012
38 1 2.3310 1.0985 -4.7551
39 1 3.8864 -1.0698 -6.1752
40 1 2.4240 -0.1886 -6.7182
41 1 1.1249 -1.9185 -5.9561
42 1 2.5772 -2.7677 -5.3616
43 1 2.2618 2.0043 2.6745
44 1 0.8724 1.5105 1.6713
45 1 -1.3630 0.3270 4.2096
46 1 -0.6564 -0.0947 2.6207
47 1 0.4129 -1.8970 3.5758
48 1 -0.2951 -1.4741 5.1647
49 1 2.8054 -1.7691 3.4107
50 1 3.5744 -0.2228 3.8556
51 1 1.4695 4.5822 4.5646
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001481391317.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:45:14
Heat of formation + Delta-G solvation = -102.115127 kcal
Electronic energy + Delta-G solvation = -31340.438671 eV
Core-core repulsion = 27240.359847 eV
Total energy + Delta-G solvation = -4100.078824 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.76375 -40.48362 -39.65954 -38.29134 -35.47116 -34.33074 -33.32447 -32.98465
-31.93546 -31.03519 -30.89488 -27.95062 -26.63471 -25.94343 -25.39444 -24.26950
-22.62626 -22.21145 -21.36890 -21.25832 -20.26884 -18.78819 -18.33801 -17.68740
-17.38586 -17.00472 -16.76917 -16.65211 -16.45842 -16.21764 -15.80443 -15.53289
-14.99941 -14.88134 -14.67654 -14.52086 -14.43288 -14.07484 -13.67988 -13.56610
-13.42331 -13.23900 -13.13329 -13.01574 -12.77082 -12.66755 -12.63664 -12.54964
-12.46301 -12.20886 -12.06083 -11.94832 -11.80249 -11.55090 -11.47329 -11.40194
-11.14819 -10.98216 -10.70097 -10.63983 -10.40744 -9.73007 -8.68529 -7.83578
-5.17793 1.50163 1.52861 1.56348 1.60167 1.81546 2.52199 2.73977
2.88852 3.35918 3.43380 3.53883 3.63376 3.83462 3.91524 3.99004
4.01538 4.10460 4.12595 4.13970 4.22343 4.26482 4.33324 4.38178
4.40713 4.48924 4.53452 4.53970 4.58498 4.71139 4.80255 4.80924
4.83086 4.90302 4.93237 4.97337 5.04667 5.05536 5.06438 5.09890
5.20798 5.27662 5.32739 5.37734 5.56447 5.62558 5.82898 5.94135
6.09909 6.25590 6.54631 7.10837 7.18843 7.73928 8.53635 9.28086
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.020110 B = 0.002679 C = 0.002523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1391.993827 B =10451.016545 C =11097.054655
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.078 3.922
3 H 0.099 0.901
4 O -0.381 6.381
5 C 0.058 3.942
6 C 0.073 3.927
7 H 0.064 0.936
8 C -0.141 4.141
9 C -0.149 4.149
10 C 0.033 3.967
11 O -0.399 6.399
12 C 0.509 3.491
13 O -0.579 6.579
14 N -0.588 5.588
15 C 0.112 3.888
16 C 0.165 3.835
17 H 0.093 0.907
18 C -0.131 4.131
19 C -0.114 4.114
20 C 0.131 3.869
21 H 0.083 0.917
22 C 0.108 3.892
23 N -0.603 5.603
24 C -0.235 4.235
25 H 0.073 0.927
26 C -0.048 4.048
27 N -0.931 5.931
28 Si 0.968 3.032
29 H -0.293 1.293
30 H -0.294 1.294
31 H -0.277 1.277
32 H 0.058 0.942
33 H 0.084 0.916
34 H 0.092 0.908
35 H 0.082 0.918
36 H 0.072 0.928
37 H 0.099 0.901
38 H 0.089 0.911
39 H 0.087 0.913
40 H 0.096 0.904
41 H 0.093 0.907
42 H 0.057 0.943
43 H 0.051 0.949
44 H 0.093 0.907
45 H 0.059 0.941
46 H 0.072 0.928
47 H 0.059 0.941
48 H 0.066 0.934
49 H 0.078 0.922
50 H 0.045 0.955
51 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.009 -3.823 -18.540 18.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.017 3.983
3 H 0.117 0.883
4 O -0.300 6.300
5 C -0.018 4.018
6 C 0.015 3.985
7 H 0.082 0.918
8 C -0.178 4.178
9 C -0.186 4.186
10 C -0.043 4.043
11 O -0.319 6.319
12 C 0.297 3.703
13 O -0.460 6.460
14 N -0.321 5.321
15 C -0.012 4.012
16 C 0.058 3.942
17 H 0.111 0.889
18 C -0.169 4.169
19 C -0.153 4.153
20 C 0.023 3.977
21 H 0.101 0.899
22 C -0.017 4.017
23 N -0.324 5.324
24 C -0.363 4.363
25 H 0.091 0.909
26 C -0.243 4.243
27 N -0.578 5.578
28 Si 0.798 3.202
29 H -0.221 1.221
30 H -0.220 1.220
31 H -0.202 1.202
32 H 0.077 0.923
33 H 0.102 0.898
34 H 0.111 0.889
35 H 0.100 0.900
36 H 0.091 0.909
37 H 0.118 0.882
38 H 0.108 0.892
39 H 0.106 0.894
40 H 0.114 0.886
41 H 0.111 0.889
42 H 0.075 0.925
43 H 0.069 0.931
44 H 0.111 0.889
45 H 0.078 0.922
46 H 0.090 0.910
47 H 0.077 0.923
48 H 0.085 0.915
49 H 0.096 0.904
50 H 0.064 0.936
51 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -0.912 -4.434 -18.369 18.919
hybrid contribution 0.681 0.883 0.895 1.430
sum -0.231 -3.551 -17.474 17.833
Atomic orbital electron populations
1.22313 0.91931 1.03530 1.04586 1.21903 0.96467 0.95992 0.83964
0.88326 1.88048 1.86835 1.35526 1.19600 1.22887 1.01635 0.92613
0.84671 1.23266 0.90311 0.91415 0.93474 0.91785 1.23107 1.04186
0.98273 0.92254 1.22937 1.01225 0.95764 0.98706 1.23362 1.00164
0.98069 0.82706 1.88993 1.45583 1.69066 1.28221 1.20871 0.78113
0.86396 0.84915 1.90615 1.50020 1.19281 1.86047 1.48154 1.57662
1.18292 1.08004 1.22570 0.97593 0.80878 1.00134 1.21904 0.89749
0.97125 0.85472 0.88904 1.22645 0.98279 0.95827 1.00197 1.22370
0.96036 0.97208 0.99700 1.22133 0.94145 0.86314 0.95101 0.89888
1.22226 0.96216 0.97360 0.85920 1.45335 1.56789 1.03672 1.26632
1.19248 1.34880 0.87835 0.94373 0.90909 1.25413 1.02322 0.97631
0.98930 1.69942 1.54728 1.10196 1.22971 0.85231 0.76861 0.78477
0.79627 1.22073 1.22009 1.20203 0.92295 0.89750 0.88929 0.89966
0.90944 0.88206 0.89191 0.89437 0.88579 0.88863 0.92506 0.93096
0.88909 0.92179 0.90999 0.92262 0.91546 0.90387 0.93632 0.94079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.20 9.13 71.98 0.66 -3.54 16
2 C 0.08 2.33 2.28 29.85 0.07 2.40 16
3 H 0.10 2.58 6.91 -2.39 -0.02 2.56 16
4 O -0.38 -12.20 9.59 -129.72 -1.24 -13.44 16
5 C 0.06 1.31 5.50 71.98 0.40 1.71 16
6 C 0.07 1.56 3.62 31.28 0.11 1.67 16
7 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
8 C -0.14 -1.84 6.59 31.90 0.21 -1.63 16
9 C -0.15 -1.67 7.01 31.59 0.22 -1.45 16
10 C 0.03 0.56 7.69 72.36 0.56 1.12 16
11 O -0.40 -10.14 11.25 -148.98 -1.68 -11.81 16
12 C 0.51 19.25 6.97 87.66 0.61 19.86 16
13 O -0.58 -26.12 16.06 15.33 0.25 -25.88 16
14 N -0.59 -22.31 2.24 -814.02 -1.83 -24.13 16
15 C 0.11 4.27 5.28 86.70 0.46 4.73 16
16 C 0.16 6.91 3.13 45.61 0.14 7.05 16
17 H 0.09 4.45 6.35 -2.39 -0.02 4.44 16
18 C -0.13 -4.58 6.18 31.55 0.20 -4.38 16
19 C -0.11 -4.00 6.18 31.55 0.20 -3.80 16
20 C 0.13 5.18 4.32 45.49 0.20 5.37 16
21 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16
22 C 0.11 4.25 5.92 86.57 0.51 4.77 16
23 N -0.60 -27.97 2.81 -635.87 -1.78 -29.76 16
24 C -0.23 -12.09 10.37 84.03 0.87 -11.22 16
25 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16
26 C -0.05 -2.50 5.42 84.86 0.46 -2.03 16
27 N -0.93 -49.11 10.41 21.65 0.23 -48.88 16
28 Si 0.97 42.95 29.56 68.60 2.03 44.98 16
29 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
30 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16
31 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
33 H 0.08 2.07 4.20 -2.39 -0.01 2.06 16
34 H 0.09 1.86 7.90 -2.39 -0.02 1.84 16
35 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16
36 H 0.07 1.43 7.90 -2.38 -0.02 1.41 16
37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
38 H 0.09 1.02 8.06 -2.39 -0.02 1.00 16
39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16
40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16
41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
43 H 0.05 2.29 7.85 -2.38 -0.02 2.27 16
44 H 0.09 2.93 4.46 -2.39 -0.01 2.92 16
45 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16
46 H 0.07 2.25 5.75 -2.39 -0.01 2.23 16
47 H 0.06 2.05 7.84 -2.39 -0.02 2.04 16
48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
49 H 0.08 3.04 7.08 -2.39 -0.02 3.03 16
50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
51 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16
Total: -1.00 -66.94 386.96 2.75 -64.19
By element:
Atomic # 1 Polarization: 23.20 SS G_CDS: 0.92 Total: 24.12 kcal
Atomic # 6 Polarization: 14.75 SS G_CDS: 5.87 Total: 20.61 kcal
Atomic # 7 Polarization: -99.39 SS G_CDS: -3.38 Total: -102.77 kcal
Atomic # 8 Polarization: -48.45 SS G_CDS: -2.67 Total: -51.13 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -66.94 2.75 -64.19 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481391317.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.927 kcal
(2) G-P(sol) polarization free energy of solvation -66.940 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds