Wall clock time and date at job start Tue Mar 31 2020 21:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47171 * 2 1 4 4 O 1.42897 * 109.47246 * 119.99653 * 2 1 3 5 5 C 1.42902 * 114.00520 * 270.00385 * 4 2 1 6 6 C 1.52999 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08995 * 110.32985 * 305.70122 * 6 5 4 8 8 C 1.54472 * 110.36971 * 183.45079 * 6 5 4 9 9 C 1.54512 * 104.06335 * 217.19166 * 8 6 5 10 10 C 1.54481 * 104.06147 * 359.97438 * 9 8 6 11 11 O 1.44425 * 110.37091 * 67.95078 * 6 5 4 12 12 C 1.50699 * 109.47319 * 240.00148 * 2 1 3 13 13 O 1.21285 * 119.99771 * 257.32155 * 12 2 1 14 14 N 1.34773 * 120.00291 * 77.31703 * 12 2 1 15 15 C 1.46662 * 125.33457 * 175.29251 * 14 12 2 16 16 C 1.53672 * 107.96922 * 179.29297 * 15 14 12 17 17 H 1.09000 * 113.31458 * 106.33557 * 16 15 14 18 18 C 1.53986 * 109.90628 * 232.81848 * 16 15 14 19 19 N 1.46757 * 106.67268 * 82.58114 * 18 16 15 20 20 C 1.36937 * 125.33016 * 198.42855 * 19 18 16 21 21 H 1.08004 * 119.99758 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00491 * 0.02643 * 20 19 18 23 23 N 1.31629 * 119.99547 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00490 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47404 * 89.99519 * 24 22 20 26 26 H 1.48501 * 109.47429 * 210.00118 * 24 22 20 27 27 H 1.48504 * 109.46928 * 329.99926 * 24 22 20 28 28 C 1.46657 * 109.33335 * 18.45253 * 19 18 16 29 29 C 1.53673 * 107.97078 * 359.28670 * 28 19 18 30 30 H 1.09005 * 112.77046 * 106.01900 * 29 28 19 31 31 C 1.47714 * 125.01521 * 354.54370 * 14 12 2 32 32 H 1.09007 * 109.46923 * 65.05297 * 1 2 3 33 33 H 1.09001 * 109.47219 * 185.05370 * 1 2 3 34 34 H 1.08996 * 109.47628 * 305.05684 * 1 2 3 35 35 H 1.09001 * 109.46476 * 299.99877 * 5 4 2 36 36 H 1.09000 * 109.46872 * 59.99266 * 5 4 2 37 37 H 1.09004 * 110.51758 * 335.83069 * 8 6 5 38 38 H 1.08993 * 110.51664 * 98.40772 * 8 6 5 39 39 H 1.08998 * 110.51360 * 118.64585 * 9 8 6 40 40 H 1.09008 * 110.51165 * 241.35678 * 9 8 6 41 41 H 1.09000 * 110.37193 * 142.81106 * 10 9 8 42 42 H 1.08994 * 110.37350 * 265.04011 * 10 9 8 43 43 H 1.09007 * 109.76384 * 59.66486 * 15 14 12 44 44 H 1.08996 * 109.78251 * 298.93391 * 15 14 12 45 45 H 1.08996 * 110.01243 * 323.27854 * 18 16 15 46 46 H 1.08994 * 110.01482 * 201.88802 * 18 16 15 47 47 H 0.96994 * 119.99474 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.76294 * 239.65905 * 28 19 18 49 49 H 1.08994 * 109.76839 * 118.92140 * 28 19 18 50 50 H 1.09002 * 109.75964 * 79.10669 * 31 14 12 51 51 H 1.09001 * 110.75215 * 317.41071 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7078 -0.6407 3.4792 7 1 2.0352 -1.4754 3.6762 8 6 2.8423 0.2495 4.7345 9 6 4.1133 -0.2798 5.4357 10 6 4.5960 -1.4277 4.5214 11 8 4.0446 -1.1225 3.2206 12 6 2.0323 -0.7104 -1.2305 13 8 2.4518 -1.8453 -1.1466 14 7 2.0154 -0.0846 -2.4240 15 6 2.5627 -0.6249 -3.6728 16 6 2.3145 0.4065 -4.7846 17 1 3.2162 0.9373 -5.0898 18 6 1.6027 -0.2652 -5.9735 19 7 0.1726 -0.2961 -5.6451 20 6 -0.7592 -1.1042 -6.2400 21 1 -1.7927 -1.0555 -5.9304 22 6 -0.3754 -1.9860 -7.2411 23 7 0.8841 -2.0449 -7.6188 24 14 -1.6466 -3.0877 -8.0532 25 1 -2.2248 -2.3920 -9.2308 26 1 -0.9994 -4.3500 -8.4925 27 1 -2.7263 -3.3972 -7.0817 28 6 -0.1022 0.6743 -4.5804 29 6 1.2254 1.3473 -4.1980 30 1 1.3019 2.3699 -4.5677 31 6 1.4266 1.2467 -2.6748 32 1 -0.3633 0.4335 -0.9318 33 1 -0.3634 -1.0237 0.0905 34 1 -0.3634 0.5902 0.8412 35 1 2.9319 0.9514 2.0450 36 1 1.2537 0.6547 2.5588 37 1 2.9700 1.2940 4.4502 38 1 1.9715 0.1340 5.3797 39 1 4.8692 0.5030 5.4980 40 1 3.8719 -0.6589 6.4288 41 1 5.6850 -1.4453 4.4774 42 1 4.2160 -2.3841 4.8804 43 1 2.0622 -1.5612 -3.9200 44 1 3.6333 -0.7974 -3.5622 45 1 1.9769 -1.2801 -6.1072 46 1 1.7646 0.3154 -6.8816 47 1 1.1523 -2.6613 -8.3181 48 1 -0.5190 0.1620 -3.7133 49 1 -0.8063 1.4252 -4.9388 50 1 2.1133 2.0229 -2.3370 51 1 0.4687 1.3477 -2.1644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501244814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:29 Heat of formation + Delta-G solvation = -89.699423 kcal Electronic energy + Delta-G solvation = -30500.805664 eV Core-core repulsion = 26401.265225 eV Total energy + Delta-G solvation = -4099.540439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.30887 -39.73732 -38.55888 -37.16950 -34.88811 -32.63638 -32.40727 -31.85581 -30.51059 -29.80747 -29.55264 -26.03917 -25.65650 -25.45249 -23.97745 -22.47668 -22.22219 -21.36743 -20.04415 -19.39628 -19.25249 -17.51429 -17.05321 -16.75528 -16.41907 -16.09885 -16.00244 -15.65250 -15.07786 -14.85405 -14.70242 -14.15627 -14.05202 -13.66890 -13.56289 -13.33872 -13.05451 -12.80292 -12.39588 -12.38210 -12.16534 -12.14171 -12.05396 -11.90318 -11.68698 -11.60519 -11.47119 -11.33581 -11.27163 -10.98859 -10.94106 -10.80543 -10.38108 -10.10513 -10.03598 -10.00612 -9.94939 -9.85025 -9.60436 -9.29107 -8.62601 -8.26645 -6.83193 -5.68040 -3.06566 2.80868 2.88138 3.41234 3.46469 3.48602 3.57065 3.71044 4.20024 4.41991 4.48802 4.51492 4.54163 4.74884 4.77420 4.78479 4.90620 4.96352 4.99869 5.08207 5.11748 5.16582 5.23061 5.31325 5.40876 5.41917 5.48193 5.49572 5.51655 5.57436 5.59241 5.63820 5.69908 5.75300 5.81290 5.94306 6.07903 6.15704 6.33842 6.42762 6.55195 6.59251 6.65606 6.75246 6.82258 6.98875 7.45352 7.62594 7.79216 7.83140 8.32943 8.45958 9.22692 9.83260 10.45979 11.38663 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002289 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.384167 B =12230.567233 C =12426.172007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 H 0.080 0.920 4 O -0.349 6.349 5 C 0.066 3.934 6 C 0.077 3.923 7 H 0.079 0.921 8 C -0.148 4.148 9 C -0.154 4.154 10 C 0.040 3.960 11 O -0.358 6.358 12 C 0.527 3.473 13 O -0.519 6.519 14 N -0.609 5.609 15 C 0.125 3.875 16 C -0.122 4.122 17 H 0.087 0.913 18 C 0.169 3.831 19 N -0.600 5.600 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.145 3.855 29 C -0.110 4.110 30 H 0.096 0.904 31 C 0.105 3.895 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.022 0.978 49 H 0.022 0.978 50 H 0.063 0.937 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 10.855 23.788 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 H 0.098 0.902 4 O -0.267 6.267 5 C -0.011 4.011 6 C 0.019 3.981 7 H 0.097 0.903 8 C -0.186 4.186 9 C -0.192 4.192 10 C -0.037 4.037 11 O -0.277 6.277 12 C 0.313 3.687 13 O -0.394 6.394 14 N -0.344 5.344 15 C 0.004 3.996 16 C -0.142 4.142 17 H 0.106 0.894 18 C 0.044 3.956 19 N -0.326 5.326 20 C -0.353 4.353 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.018 3.982 29 C -0.129 4.129 30 H 0.115 0.885 31 C -0.018 4.018 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.040 0.960 49 H 0.040 0.960 50 H 0.081 0.919 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.702 9.785 23.548 25.930 hybrid contribution -0.834 -0.108 -0.260 0.881 sum 3.867 9.677 23.288 25.513 Atomic orbital electron populations 1.22286 0.93461 1.04181 1.03137 1.21836 0.95162 0.95806 0.85506 0.90188 1.88112 1.86483 1.33478 1.18640 1.22656 0.99386 0.92849 0.86250 1.22979 0.86135 0.96124 0.92827 0.90344 1.22921 0.98765 1.00578 0.96359 1.22937 0.97591 0.99068 0.99633 1.23441 0.99704 0.97096 0.83418 1.89324 1.26874 1.85149 1.26335 1.19879 0.79279 0.86428 0.83107 1.90726 1.46080 1.17425 1.85175 1.48425 1.58552 1.19162 1.08294 1.21814 0.97834 0.98352 0.81640 1.23182 0.97948 0.95628 0.97442 0.89432 1.21476 0.83017 1.01000 0.90074 1.44196 1.04744 1.42758 1.40895 1.19032 0.89318 1.13160 1.13811 0.90512 1.24791 0.96595 0.99930 0.99178 1.69857 1.14355 1.40113 1.32675 0.86079 0.80169 0.80018 0.79262 1.21645 1.21616 1.20719 1.21136 0.93233 0.91678 0.92109 1.22833 0.97493 0.99827 0.92756 0.88542 1.22314 0.97923 0.84395 0.97198 0.90394 0.90744 0.91443 0.92360 0.91731 0.90372 0.90055 0.90539 0.90414 0.89037 0.92172 0.90183 0.92342 0.88501 0.96203 0.93661 0.96012 0.96033 0.91919 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.39 37.15 0.35 -1.62 16 2 C 0.08 1.06 2.50 -27.89 -0.07 0.99 16 3 H 0.08 0.85 7.49 -51.93 -0.39 0.46 16 4 O -0.35 -5.19 9.58 -57.01 -0.55 -5.73 16 5 C 0.07 0.67 5.35 37.16 0.20 0.87 16 6 C 0.08 0.77 3.57 -25.96 -0.09 0.68 16 7 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 8 C -0.15 -0.95 6.63 -25.17 -0.17 -1.12 16 9 C -0.15 -0.94 7.09 -25.16 -0.18 -1.12 16 10 C 0.04 0.34 7.63 37.93 0.29 0.63 16 11 O -0.36 -4.57 11.35 -35.63 -0.40 -4.97 16 12 C 0.53 9.51 7.11 -10.99 -0.08 9.44 16 13 O -0.52 -11.87 16.90 -13.73 -0.23 -12.10 16 14 N -0.61 -10.30 3.33 -171.56 -0.57 -10.87 16 15 C 0.13 2.38 6.29 -3.60 -0.02 2.35 16 16 C -0.12 -2.19 4.05 -88.48 -0.36 -2.55 16 17 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 18 C 0.17 3.99 4.87 -3.39 -0.02 3.97 16 19 N -0.60 -15.03 3.38 -171.89 -0.58 -15.61 16 20 C -0.22 -6.25 10.25 -15.06 -0.15 -6.40 16 21 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 22 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 23 N -0.92 -26.86 10.16 55.49 0.56 -26.30 16 24 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.14 2.87 6.64 -3.61 -0.02 2.85 16 29 C -0.11 -1.73 4.03 -88.48 -0.36 -2.08 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 31 C 0.10 1.39 5.55 -2.87 -0.02 1.37 16 32 H 0.08 0.87 5.79 -51.93 -0.30 0.57 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.57 7.99 -51.93 -0.41 0.15 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.06 0.48 7.99 -51.93 -0.41 0.06 16 37 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.84 7.52 -51.93 -0.39 1.45 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 2.60 5.86 -51.93 -0.30 2.30 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.02 0.45 7.47 -51.93 -0.39 0.06 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.88 5.28 -51.93 -0.27 0.61 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -35.53 395.37 -10.38 -45.91 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.75 Total: -1.49 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.79 Total: 7.90 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.59 Total: -52.78 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.18 Total: -22.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.53 -10.38 -45.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501244814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.789 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds